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IVF0008240 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0008240
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionVPS13_C domain-containing protein
Genome locationchr02:9343379..9343678
RNA-Seq ExpressionIVF0008240
SyntenyIVF0008240
Gene Ontology termsNA
InterPro domainsIPR026847 - Vacuolar protein sorting-associated protein 13


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038221.1 uncharacterized protein E6C27_scaffold270G00600 [Cucumis melo var. makuwa]7.64e-53100Show/hide
Query:  RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVGNGHGNLGTNLILLSDDDTGYVPYRIDNFSKE
        RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVGNGHGNLGTNLILLSDDDTGYVPYRIDNFSKE
Subjt:  RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVGNGHGNLGTNLILLSDDDTGYVPYRIDNFSKE

KAG6590102.1 hypothetical protein SDJN03_15525, partial [Cucurbita argyrosperma subsp. sororia]6.54e-5496.74Show/hide
Query:  RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVGNGHGNLGTNLILLSDDDTGYVPYRIDNFSKEV
        RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSS VLRIEVQNVDVS DNKIVGNGHGN GTNLILLSDDDTGYVPYRIDNFSKEV
Subjt:  RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVGNGHGNLGTNLILLSDDDTGYVPYRIDNFSKEV

TYK30611.1 uncharacterized protein E5676_scaffold84664G00230 [Cucumis melo var. makuwa]1.78e-56100Show/hide
Query:  MIRELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVGNGHGNLGTNLILLSDDDTGYVPYRIDNFSKEV
        MIRELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVGNGHGNLGTNLILLSDDDTGYVPYRIDNFSKEV
Subjt:  MIRELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVGNGHGNLGTNLILLSDDDTGYVPYRIDNFSKEV

XP_008443665.1 PREDICTED: uncharacterized protein LOC103487213 isoform X1 [Cucumis melo]7.60e-53100Show/hide
Query:  RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVGNGHGNLGTNLILLSDDDTGYVPYRIDNFSKE
        RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVGNGHGNLGTNLILLSDDDTGYVPYRIDNFSKE
Subjt:  RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVGNGHGNLGTNLILLSDDDTGYVPYRIDNFSKE

XP_008443666.1 PREDICTED: uncharacterized protein LOC103487213 isoform X2 [Cucumis melo]7.59e-53100Show/hide
Query:  RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVGNGHGNLGTNLILLSDDDTGYVPYRIDNFSKE
        RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVGNGHGNLGTNLILLSDDDTGYVPYRIDNFSKE
Subjt:  RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVGNGHGNLGTNLILLSDDDTGYVPYRIDNFSKE

TrEMBL top hitse value%identityAlignment
A0A1S3B8M2 uncharacterized protein LOC103487213 isoform X17.9e-46100Show/hide
Query:  RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVGNGHGNLGTNLILLSDDDTGYVPYRIDNFSKE
        RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVGNGHGNLGTNLILLSDDDTGYVPYRIDNFSKE
Subjt:  RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVGNGHGNLGTNLILLSDDDTGYVPYRIDNFSKE

A0A1S3B9B2 uncharacterized protein LOC103487213 isoform X27.9e-46100Show/hide
Query:  RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVGNGHGNLGTNLILLSDDDTGYVPYRIDNFSKE
        RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVGNGHGNLGTNLILLSDDDTGYVPYRIDNFSKE
Subjt:  RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVGNGHGNLGTNLILLSDDDTGYVPYRIDNFSKE

A0A5A7T9A7 Uncharacterized protein7.9e-46100Show/hide
Query:  RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVGNGHGNLGTNLILLSDDDTGYVPYRIDNFSKE
        RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVGNGHGNLGTNLILLSDDDTGYVPYRIDNFSKE
Subjt:  RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVGNGHGNLGTNLILLSDDDTGYVPYRIDNFSKE

A0A5D3E4W1 VPS13_C domain-containing protein2.5e-47100Show/hide
Query:  MIRELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVGNGHGNLGTNLILLSDDDTGYVPYRIDNFSKEV
        MIRELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVGNGHGNLGTNLILLSDDDTGYVPYRIDNFSKEV
Subjt:  MIRELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVGNGHGNLGTNLILLSDDDTGYVPYRIDNFSKEV

A0A6J1H814 uncharacterized protein LOC111461381 isoform X19.7e-4496.7Show/hide
Query:  RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVGNGHGNLGTNLILLSDDDTGYVPYRIDNFSKE
        RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSS VLRIEVQNVDVS DNKIVGNGHGN GTNLILLSDDDTGYVPYRIDNFSKE
Subjt:  RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVGNGHGNLGTNLILLSDDDTGYVPYRIDNFSKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G24740.1 Protein of unknown function (DUF1162)2.2e-3266.3Show/hide
Query:  RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSI-DNKIVGNGHGNLGTNLILLSDDDTGYVPYRIDNFSKE
        RELLVS+R NEPGWQWSGSF+PD LGDT +K+ NY+  +  ++R+EVQN ++S  D KIVG+ HG++GTN ILLSDDD GY+PYRIDNFS E
Subjt:  RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSI-DNKIVGNGHGNLGTNLILLSDDDTGYVPYRIDNFSKE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCAGGGAACTACTGGTTTCTGTTCGTTATAACGAACCTGGGTGGCAATGGTCTGGCAGTTTCATACCTGATCAACTTGGCGATACTCTTGTGAAAATGCGA
AATTATATCACTGGTTCTTCAAAAGTTCTTAGAATTGAAGTTCAGAATGTTGATGTATCAATTGACAATAAGATTGTTGGAAATGGTCATGGAAATTTAGGGACA
AATTTGATTCTCCTGTCGGATGATGACACCGGATATGTACCTTACAGAATAGATAACTTTTCAAAGGAGGTAGGTGACATTGTTCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATCAGGGAACTACTGGTTTCTGTTCGTTATAACGAACCTGGGTGGCAATGGTCTGGCAGTTTCATACCTGATCAACTTGGCGATACTCTTGTGAAAATGCGA
AATTATATCACTGGTTCTTCAAAAGTTCTTAGAATTGAAGTTCAGAATGTTGATGTATCAATTGACAATAAGATTGTTGGAAATGGTCATGGAAATTTAGGGACA
AATTTGATTCTCCTGTCGGATGATGACACCGGATATGTACCTTACAGAATAGATAACTTTTCAAAGGAGGTAGGTGACATTGTTCCTTAA
Protein sequenceShow/hide protein sequence
MIRELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVGNGHGNLGTNLILLSDDDTGYVPYRIDNFSKEVGDIVP