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IVF0008260 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0008260
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag protease polyprotein
Genome locationchr09:13670830..13671084
RNA-Seq ExpressionIVF0008260
SyntenyIVF0008260
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033254.1 gag protease polyprotein [Cucumis melo var. makuwa]4.72e-1548.91Show/hide
Query:  MSPSISAHRGG-KGDRGARHNQPEDHSILQTVDPTAPITNADLVTMEQMYRDMLTEALTQFQPVHKTQPALVQ-------ALMVPKNVSDEL
        M P   A RGG +G RGA   QPE+   +Q  +PTAP+T ADL  MEQ Y+DML  AL  F    KTQ A  Q       AL+VP+ VSD+L
Subjt:  MSPSISAHRGG-KGDRGARHNQPEDHSILQTVDPTAPITNADLVTMEQMYRDMLTEALTQFQPVHKTQPALVQ-------ALMVPKNVSDEL

KAA0042183.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]9.67e-1647.62Show/hide
Query:  MSPSISAHRGGKGDRGARHNQPEDHSILQTVDPTAPITNADLVTMEQMYRDMLTEALTQFQPVHKTQPALVQALMVPKNVSDEL
        MSP     RGG GDRG  H QPE H ++QT +P AP+T ADL  MEQ Y+DML +AL  F    +T      AL+  +  SD+L
Subjt:  MSPSISAHRGGKGDRGARHNQPEDHSILQTVDPTAPITNADLVTMEQMYRDMLTEALTQFQPVHKTQPALVQALMVPKNVSDEL

KAA0062273.1 uncharacterized protein E6C27_scaffold154G00130 [Cucumis melo var. makuwa]8.83e-54100Show/hide
Query:  MSPSISAHRGGKGDRGARHNQPEDHSILQTVDPTAPITNADLVTMEQMYRDMLTEALTQFQPVHKTQPALVQALMVPKNVSDEL
        MSPSISAHRGGKGDRGARHNQPEDHSILQTVDPTAPITNADLVTMEQMYRDMLTEALTQFQPVHKTQPALVQALMVPKNVSDEL
Subjt:  MSPSISAHRGGKGDRGARHNQPEDHSILQTVDPTAPITNADLVTMEQMYRDMLTEALTQFQPVHKTQPALVQALMVPKNVSDEL

TYJ99707.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.22e-1647.25Show/hide
Query:  MSPSISAHRGGKGDRGARHNQPEDHSILQTVDPTAPITNADLVTMEQMYRDMLTEALTQFQPVHK-------TQPALVQALMVPKNVSDEL
        M P   A RGG+G RGA H QPE    +Q  +PTAP+T ADL+ +EQ Y+DM+  ALT F    +       TQ AL QAL+VP+ + D+L
Subjt:  MSPSISAHRGGKGDRGARHNQPEDHSILQTVDPTAPITNADLVTMEQMYRDMLTEALTQFQPVHK-------TQPALVQALMVPKNVSDEL

TYK26963.1 uncharacterized protein E5676_scaffold322G00250 [Cucumis melo var. makuwa]7.15e-1551.35Show/hide
Query:  MSPSISAHRGG-KGDRGARHNQPEDHSILQTVDPTAPITNADLVTMEQMYRDMLTEALTQFQPVHKTQPALVQA
        M P   A RGG +GDRGA   QPE+   + T DP AP+T ADL  MEQ Y+DML  AL  F    + Q A VQA
Subjt:  MSPSISAHRGG-KGDRGARHNQPEDHSILQTVDPTAPITNADLVTMEQMYRDMLTEALTQFQPVHKTQPALVQA

TrEMBL top hitse value%identityAlignment
A0A5A7V2G3 Uncharacterized protein1.0e-38100Show/hide
Query:  MSPSISAHRGGKGDRGARHNQPEDHSILQTVDPTAPITNADLVTMEQMYRDMLTEALTQFQPVHKTQPALVQALMVPKNVSDEL
        MSPSISAHRGGKGDRGARHNQPEDHSILQTVDPTAPITNADLVTMEQMYRDMLTEALTQFQPVHKTQPALVQALMVPKNVSDEL
Subjt:  MSPSISAHRGGKGDRGARHNQPEDHSILQTVDPTAPITNADLVTMEQMYRDMLTEALTQFQPVHKTQPALVQALMVPKNVSDEL

A0A5D3BKQ3 Ty3-gypsy retrotransposon protein8.3e-1248.35Show/hide
Query:  MSPSISAHRGGKGDRGARHNQPEDHSILQTVDPTAPITNADLVTMEQMYRDMLTEALTQF---QPVH----KTQPALVQALMVPKNVSDEL
        M P   A RGG+G RGA H QPE    +Q  +PTAP+T ADL+ +EQ Y+DM+  ALT F   Q +     +TQ AL QAL+VP+ + D+L
Subjt:  MSPSISAHRGGKGDRGARHNQPEDHSILQTVDPTAPITNADLVTMEQMYRDMLTEALTQF---QPVH----KTQPALVQALMVPKNVSDEL

A0A5D3D824 Gag protease polyprotein3.5e-1048.91Show/hide
Query:  MSPSISAHRGG-KGDRGARHNQPEDHSILQTVDPTAPITNADLVTMEQMYRDMLTEALTQFQPVHKTQP-------ALVQALMVPKNVSDEL
        M P   A RGG +G RGA   QPE+   +Q  +PTAP+T ADL  MEQ Y+DML  AL  F    KTQ        A  QAL+VP+ VSD+L
Subjt:  MSPSISAHRGG-KGDRGARHNQPEDHSILQTVDPTAPITNADLVTMEQMYRDMLTEALTQFQPVHKTQP-------ALVQALMVPKNVSDEL

A0A5D3DSL2 Retrotransposon protein, putative, Ty3-gypsy subclass1.4e-1147.62Show/hide
Query:  MSPSISAHRGGKGDRGARHNQPEDHSILQTVDPTAPITNADLVTMEQMYRDMLTEALTQFQPVHKTQPALVQALMVPKNVSDEL
        MSP     RGG GDRG  H QPE H ++QT +P AP+T ADL  MEQ Y+DML +AL  F    +T      AL+  +  SD+L
Subjt:  MSPSISAHRGGKGDRGARHNQPEDHSILQTVDPTAPITNADLVTMEQMYRDMLTEALTQFQPVHKTQPALVQALMVPKNVSDEL

A0A5D3DYS8 Reverse transcriptase2.3e-0948.81Show/hide
Query:  MSPSISAHRGGKGDRGARHNQPEDHSILQTVDPTAPITNADLVTMEQMYRDMLTEALTQFQPVHKTQPALVQALMVPKNVSDEL
        M P   AHRG  G RG    QPE+   +QT +PTA IT ADL  ME+ Y++ML +AL  F  V KTQ A  Q  +VP+ V D+L
Subjt:  MSPSISAHRGGKGDRGARHNQPEDHSILQTVDPTAPITNADLVTMEQMYRDMLTEALTQFQPVHKTQPALVQALMVPKNVSDEL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGCCAAGCATAAGTGCTCATAGAGGTGGTAAGGGAGATAGAGGAGCTAGGCATAACCAACCTGAAGACCATTCTATCTTACAAACTGTCGACCCCACTGCACCTAT
CACAAATGCAGACCTTGTTACAATGGAGCAAATGTACCGAGATATGTTAACAGAGGCATTGACACAATTTCAACCTGTCCATAAAACCCAGCCAGCCCTTGTTCAGGCCC
TAATGGTACCCAAGAATGTATCGGATGAGCTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGCCAAGCATAAGTGCTCATAGAGGTGGTAAGGGAGATAGAGGAGCTAGGCATAACCAACCTGAAGACCATTCTATCTTACAAACTGTCGACCCCACTGCACCTAT
CACAAATGCAGACCTTGTTACAATGGAGCAAATGTACCGAGATATGTTAACAGAGGCATTGACACAATTTCAACCTGTCCATAAAACCCAGCCAGCCCTTGTTCAGGCCC
TAATGGTACCCAAGAATGTATCGGATGAGCTGTAA
Protein sequenceShow/hide protein sequence
MSPSISAHRGGKGDRGARHNQPEDHSILQTVDPTAPITNADLVTMEQMYRDMLTEALTQFQPVHKTQPALVQALMVPKNVSDEL