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IVF0008273 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0008273
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag-pol polyprotein
Genome locationchr10:12100986..12101417
RNA-Seq ExpressionIVF0008273
SyntenyIVF0008273
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025734.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.37e-8084.4Show/hide
Query:  MEIIREGPSTSRPLILDGKNYSYWKSRMIFFIKTLDGRAWRALVAGYEPPMIIVDGVSVPKPEVDWTDAEEQASIGNARAINAIFNDVDLNVFKLINSCS
        MEIIREGPS SRP +LDGKNYSYWK RMIF IKTLDG+AWRALVAGYEPPM+ +D VSV KPEVDWTD EEQAS+GNARAINAIFN VDLNVFKLINSC+
Subjt:  MEIIREGPSTSRPLILDGKNYSYWKSRMIFFIKTLDGRAWRALVAGYEPPMIIVDGVSVPKPEVDWTDAEEQASIGNARAINAIFNDVDLNVFKLINSCS

Query:  TAKEAWRLLEVTYEGTSKVKISRLQLITSKFEALKMYEDES
        T KEAW++LEV YEGTSKVKIS LQLITSKFE LKM EDES
Subjt:  TAKEAWRLLEVTYEGTSKVKISRLQLITSKFEALKMYEDES

KAA0033522.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.80e-8087.14Show/hide
Query:  MEIIREGPSTSRPLILDGKNYSYWKSRMIFFIKTLDGRAWRALVAGYEPPMIIVDGVSVPKPEVDWTDAEEQASIGNARAINAIFNDVDLNVFKLINSCS
        MEIIREGPSTSRP +LDGKNYSYWK RMIFFI+TLDGRAWRALVAGY+PPMI ++GVSVPKPEVDWTDAEEQ+ +GNARA+NAIFN VDLNVFKLINSCS
Subjt:  MEIIREGPSTSRPLILDGKNYSYWKSRMIFFIKTLDGRAWRALVAGYEPPMIIVDGVSVPKPEVDWTDAEEQASIGNARAINAIFNDVDLNVFKLINSCS

Query:  TAKEAWRLLEVTYEGTSKVKISRLQLITSKFEALKMYEDE
        TAKEAW+ LEV YEGTSKVKISRLQLITSKFEAL+M EDE
Subjt:  TAKEAWRLLEVTYEGTSKVKISRLQLITSKFEALKMYEDE

KAA0033829.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.53e-8387.86Show/hide
Query:  MEIIREGPSTSRPLILDGKNYSYWKSRMIFFIKTLDGRAWRALVAGYEPPMIIVDGVSVPKPEVDWTDAEEQASIGNARAINAIFNDVDLNVFKLINSCS
        MEII+EGPS SRP +LDGKNYSYWK RMIFFIKTLDG+AWRALVAGY+PPMIIV+GVSVPKPEVDWTDAEEQASIGNARA N  FN VDLNVFKLINSCS
Subjt:  MEIIREGPSTSRPLILDGKNYSYWKSRMIFFIKTLDGRAWRALVAGYEPPMIIVDGVSVPKPEVDWTDAEEQASIGNARAINAIFNDVDLNVFKLINSCS

Query:  TAKEAWRLLEVTYEGTSKVKISRLQLITSKFEALKMYEDE
        TAKEAW+ LEV YEGTSKVKISRLQLITSKFEAL+M EDE
Subjt:  TAKEAWRLLEVTYEGTSKVKISRLQLITSKFEALKMYEDE

KAA0035513.1 gag-pol polyprotein [Cucumis melo var. makuwa]8.14e-8186.52Show/hide
Query:  MEIIREGPSTSRPLILDGKNYSYWKSRMIFFIKTLDGRAWRALVAGYEPPMIIVDGVSVPKPEVDWTDAEEQASIGNARAINAIFNDVDLNVFKLINSCS
        MEIIREGPS SRP +LDGKNYSYWK RMIFFIKTL G+AWRALVAGYEPPM+ VDGVSVPKPEVDWT A+EQAS+GNARAINAIFN VDLNVFKLINSC+
Subjt:  MEIIREGPSTSRPLILDGKNYSYWKSRMIFFIKTLDGRAWRALVAGYEPPMIIVDGVSVPKPEVDWTDAEEQASIGNARAINAIFNDVDLNVFKLINSCS

Query:  TAKEAWRLLEVTYEGTSKVKISRLQLITSKFEALKMYEDES
        TAKEA ++LEV YEGTSKVKIS+LQLITSKFEALKM EDES
Subjt:  TAKEAWRLLEVTYEGTSKVKISRLQLITSKFEALKMYEDES

KAA0060333.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.45e-8084.4Show/hide
Query:  MEIIREGPSTSRPLILDGKNYSYWKSRMIFFIKTLDGRAWRALVAGYEPPMIIVDGVSVPKPEVDWTDAEEQASIGNARAINAIFNDVDLNVFKLINSCS
        MEIIREGPS SRPLILDGKNY YWK RMIFFIKTLDG+AWRALVAGY PPMI V+GVSVPKPEVDWTDAEEQAS+GNA+A+N+IFN VDLN+FKLINS S
Subjt:  MEIIREGPSTSRPLILDGKNYSYWKSRMIFFIKTLDGRAWRALVAGYEPPMIIVDGVSVPKPEVDWTDAEEQASIGNARAINAIFNDVDLNVFKLINSCS

Query:  TAKEAWRLLEVTYEGTSKVKISRLQLITSKFEALKMYEDES
        T KEAW+ LEV YEGTSKVKIS LQLITSKFEAL+M +DES
Subjt:  TAKEAWRLLEVTYEGTSKVKISRLQLITSKFEALKMYEDES

TrEMBL top hitse value%identityAlignment
A0A5A7TCV9 Gag-pol polyprotein4.6e-6385.92Show/hide
Query:  MEIIREGPSTSRPLILDGKNYSYWKSRMIFFIKTLDGRAWRALVAGYEPPMIIVDGVSVPKPEVDWTDAEEQASIGNARAINAIFNDVDLNVFKLINSCS
        MEIIREGPS SR  ILDGKNYSYWK RMIFFIK LDG+AWRALVAGY+PPMI V+GV VPKPEVDWTDAEEQAS+GNARA+NAIFN VDLNVFKLINSCS
Subjt:  MEIIREGPSTSRPLILDGKNYSYWKSRMIFFIKTLDGRAWRALVAGYEPPMIIVDGVSVPKPEVDWTDAEEQASIGNARAINAIFNDVDLNVFKLINSCS

Query:  TAKEAWRLLEVTYEGTSKVKISRLQLITSKFEALKMYEDESL
        T+KEAW+ LEV YEGTSKVKISRLQLITSKFEAL+M EDES+
Subjt:  TAKEAWRLLEVTYEGTSKVKISRLQLITSKFEALKMYEDESL

A0A5D3B9V9 Gag-pol polyprotein2.4e-6487.14Show/hide
Query:  MEIIREGPSTSRPLILDGKNYSYWKSRMIFFIKTLDGRAWRALVAGYEPPMIIVDGVSVPKPEVDWTDAEEQASIGNARAINAIFNDVDLNVFKLINSCS
        MEIIREGPSTSRP +LDGKNYSYWK RMIFFI+TLDGRAWRALVAGY+PPMI ++GVSVPKPEVDWTDAEEQ+ +GNARA+NAIFN VDLNVFKLINSCS
Subjt:  MEIIREGPSTSRPLILDGKNYSYWKSRMIFFIKTLDGRAWRALVAGYEPPMIIVDGVSVPKPEVDWTDAEEQASIGNARAINAIFNDVDLNVFKLINSCS

Query:  TAKEAWRLLEVTYEGTSKVKISRLQLITSKFEALKMYEDE
        TAKEAW+ LEV YEGTSKVKISRLQLITSKFEAL+M EDE
Subjt:  TAKEAWRLLEVTYEGTSKVKISRLQLITSKFEALKMYEDE

A0A5D3D1H0 Gag-proteinase polyprotein9.3e-6485.92Show/hide
Query:  MEIIREGPSTSRPLILDGKNYSYWKSRMIFFIKTLDGRAWRALVAGYEPPMIIVDGVSVPKPEVDWTDAEEQASIGNARAINAIFNDVDLNVFKLINSCS
        MEIIREGPS SR  +LDGKNYSYWK RMIFFIKTLDG+AWRALV GYEPPM+ V+GVSVPKPEVDWTDAEEQAS+GNARAINAIFN VDLN FKLINSC+
Subjt:  MEIIREGPSTSRPLILDGKNYSYWKSRMIFFIKTLDGRAWRALVAGYEPPMIIVDGVSVPKPEVDWTDAEEQASIGNARAINAIFNDVDLNVFKLINSCS

Query:  TAKEAWRLLEVTYEGTSKVKISRLQLITSKFEALKMYEDESL
        TAKEAW++LEV YEGTSKVKISRLQLITSKFEA KM EDES+
Subjt:  TAKEAWRLLEVTYEGTSKVKISRLQLITSKFEALKMYEDESL

A0A5D3DEP7 Gag-pol polyprotein5.5e-6487.86Show/hide
Query:  MEIIREGPSTSRPLILDGKNYSYWKSRMIFFIKTLDGRAWRALVAGYEPPMIIVDGVSVPKPEVDWTDAEEQASIGNARAINAIFNDVDLNVFKLINSCS
        MEII+EGPS SRP +LDGKNYSYWK RMIFFIKTLDG+AWRALVAGY+PPMIIV+GVSVPKPEVDWTDAEEQASIGNARA N  FN VDLNVFKLINSCS
Subjt:  MEIIREGPSTSRPLILDGKNYSYWKSRMIFFIKTLDGRAWRALVAGYEPPMIIVDGVSVPKPEVDWTDAEEQASIGNARAINAIFNDVDLNVFKLINSCS

Query:  TAKEAWRLLEVTYEGTSKVKISRLQLITSKFEALKMYEDE
        TAKEAW+ LEV YEGTSKVKISRLQLITSKFEAL+M EDE
Subjt:  TAKEAWRLLEVTYEGTSKVKISRLQLITSKFEALKMYEDE

A0A5D3DIW3 Gag-pol polyprotein1.4e-6484.51Show/hide
Query:  MEIIREGPSTSRPLILDGKNYSYWKSRMIFFIKTLDGRAWRALVAGYEPPMIIVDGVSVPKPEVDWTDAEEQASIGNARAINAIFNDVDLNVFKLINSCS
        MEIIREGP+ SRPL+LDGKNYSYWK RMIFFIKTLDG+AWRALV+GY+PPM+ VDG SVPKPEVDWT+AEEQAS+GNARAINAIFN VDLNVFKLINSC+
Subjt:  MEIIREGPSTSRPLILDGKNYSYWKSRMIFFIKTLDGRAWRALVAGYEPPMIIVDGVSVPKPEVDWTDAEEQASIGNARAINAIFNDVDLNVFKLINSCS

Query:  TAKEAWRLLEVTYEGTSKVKISRLQLITSKFEALKMYEDESL
        T KEAW++L+V YEGTSKVKISRLQLITSKFEAL+M EDES+
Subjt:  TAKEAWRLLEVTYEGTSKVKISRLQLITSKFEALKMYEDESL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATAATCAGAGAGGGACCTTCAACTTCTCGTCCTCTTATACTGGATGGTAAAAATTACTCATATTGGAAGTCTCGTATGATATTCTTTATTAAAACATTAGATGG
GAGAGCTTGGAGAGCTCTTGTGGCTGGTTATGAACCTCCAATGATTATTGTGGATGGTGTATCAGTTCCAAAACCTGAGGTTGACTGGACTGATGCTGAAGAACAAGCAT
CAATTGGGAATGCTAGAGCTATAAATGCAATATTCAATGATGTGGATCTAAATGTGTTCAAACTTATAAACTCCTGTAGTACAGCCAAAGAAGCATGGAGATTATTAGAA
GTTACTTATGAAGGGACTTCTAAAGTCAAGATATCCAGACTACAATTGATAACATCGAAATTTGAAGCTTTAAAAATGTATGAAGATGAATCACTTTTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGATAATCAGAGAGGGACCTTCAACTTCTCGTCCTCTTATACTGGATGGTAAAAATTACTCATATTGGAAGTCTCGTATGATATTCTTTATTAAAACATTAGATGG
GAGAGCTTGGAGAGCTCTTGTGGCTGGTTATGAACCTCCAATGATTATTGTGGATGGTGTATCAGTTCCAAAACCTGAGGTTGACTGGACTGATGCTGAAGAACAAGCAT
CAATTGGGAATGCTAGAGCTATAAATGCAATATTCAATGATGTGGATCTAAATGTGTTCAAACTTATAAACTCCTGTAGTACAGCCAAAGAAGCATGGAGATTATTAGAA
GTTACTTATGAAGGGACTTCTAAAGTCAAGATATCCAGACTACAATTGATAACATCGAAATTTGAAGCTTTAAAAATGTATGAAGATGAATCACTTTTATAG
Protein sequenceShow/hide protein sequence
MEIIREGPSTSRPLILDGKNYSYWKSRMIFFIKTLDGRAWRALVAGYEPPMIIVDGVSVPKPEVDWTDAEEQASIGNARAINAIFNDVDLNVFKLINSCSTAKEAWRLLE
VTYEGTSKVKISRLQLITSKFEALKMYEDESLL