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IVF0008292 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0008292
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr10:13022525..13022785
RNA-Seq ExpressionIVF0008292
SyntenyIVF0008292
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046569.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.31e-1056.9Show/hide
Query:  MREKSGAIQRETGKPRLYRLKVDNAVRVTREEGITLGAKSNAFDMILREEVYTPKKLR
        M+++SG  +RE  +PR Y +KV N +RV  E+GI L AKS AF  IL EEVYTPK+LR
Subjt:  MREKSGAIQRETGKPRLYRLKVDNAVRVTREEGITLGAKSNAFDMILREEVYTPKKLR
TrEMBL top hitse value%identityAlignment
A0A5A7TZA6 Ty3-gypsy retrotransposon protein2.2e-0743.16Show/hide
Query:  MREKSGAIQRETGKPRLYRLKVDNAVRVTREEGITLGAKSNAFDMILREEVYTPKKLRR---ESKCLVKRHDNSH-------GEGNNSDFSGREN
        M+++SG  +RE  +PR Y +KV N +RV  E+GI L AKS AF  IL EEVYTPK+LR    + K   KR   S+       G  +   F G+ N
Subjt:  MREKSGAIQRETGKPRLYRLKVDNAVRVTREEGITLGAKSNAFDMILREEVYTPKKLRR---ESKCLVKRHDNSH-------GEGNNSDFSGREN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAGAAAAGAGTGGGGCGATACAAAGAGAAACGGGTAAGCCAAGATTATATCGCTTGAAGGTAGACAACGCGGTAAGAGTAACTCGGGAAGAAGGTATTACCTTAGG
CGCCAAGAGCAACGCATTTGACATGATATTGCGAGAAGAAGTATACACTCCCAAGAAATTGAGGCGAGAAAGTAAATGTCTTGTAAAGCGACATGACAACTCACATGGAG
AAGGAAACAACAGTGACTTTTCGGGAAGAGAAAACGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGCGAGAAAAGAGTGGGGCGATACAAAGAGAAACGGGTAAGCCAAGATTATATCGCTTGAAGGTAGACAACGCGGTAAGAGTAACTCGGGAAGAAGGTATTACCTTAGG
CGCCAAGAGCAACGCATTTGACATGATATTGCGAGAAGAAGTATACACTCCCAAGAAATTGAGGCGAGAAAGTAAATGTCTTGTAAAGCGACATGACAACTCACATGGAG
AAGGAAACAACAGTGACTTTTCGGGAAGAGAAAACGGATAG
Protein sequenceShow/hide protein sequence
MREKSGAIQRETGKPRLYRLKVDNAVRVTREEGITLGAKSNAFDMILREEVYTPKKLRRESKCLVKRHDNSHGEGNNSDFSGRENG