CuGenDBv2

Gene ID	IVF0008296
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Mediator of RNA polymerase II transcription subunit 28
Genome location	chr07:24206187..24210207
RNA-Seq Expression	IVF0008296
Synteny	IVF0008296
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0016592 - mediator complex (cellular component)
InterPro domains	IPR034456 - Mediator of RNA polymerase II transcription subunit 28

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004152267.1 mediator of RNA polymerase II transcription subunit 28 [Cucumis sativus]

3.92e-86

95.74

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Query:  MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQ +DQQHSLDPQ QSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKVKNDIIKKQERLIEGWKKDLKEQLDKHNNELEKV
        AIEEELKVKN+IIKKQE+LIEGWKKDLK+QLDKHNNELEKV
Subjt:  AIEEELKVKNDIIKKQERLIEGWKKDLKEQLDKHNNELEKV

XP_008454378.1 PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo]

1.22e-89

100

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Query:  MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKVKNDIIKKQERLIEGWKKDLKEQLDKHNNELEKV
        AIEEELKVKNDIIKKQERLIEGWKKDLKEQLDKHNNELEKV
Subjt:  AIEEELKVKNDIIKKQERLIEGWKKDLKEQLDKHNNELEKV

XP_022149222.1 mediator of RNA polymerase II transcription subunit 28 [Momordica charantia]

7.30e-82

91.49

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Query:  MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MA+RQ +DQQH LDPQ QS QSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEIS
Subjt:  MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKVKNDIIKKQERLIEGWKKDLKEQLDKHNNELEKV
        AIEEELK+KNDIIKK ERLIEGWKKDLK+QL KHNNELEKV
Subjt:  AIEEELKVKNDIIKKQERLIEGWKKDLKEQLDKHNNELEKV

XP_022922953.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita moschata]

1.53e-83

92.2

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Query:  MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQ LDQQ+ +DPQ QSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKVKNDIIKKQERLIEGWKKDLKEQLDKHNNELEKV
        AIEEELK+K+DIIKKQERLIEGWKKDLK+QLDKHNNELEKV
Subjt:  AIEEELKVKNDIIKKQERLIEGWKKDLKEQLDKHNNELEKV

XP_038904970.1 mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida]

6.51e-85

95.04

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Query:  MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQ LDQQH LDPQ QSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEIS
Subjt:  MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKVKNDIIKKQERLIEGWKKDLKEQLDKHNNELEKV
        AIEEELK+KN+IIKKQERLIEGWKKDLK+QLDKHNNELEKV
Subjt:  AIEEELKVKNDIIKKQERLIEGWKKDLKEQLDKHNNELEKV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KT19 Uncharacterized protein

1.7e-65

95.74

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Query:  MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQ +DQQHSLDPQ QSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKVKNDIIKKQERLIEGWKKDLKEQLDKHNNELEKV
        AIEEELKVKN+IIKKQE+LIEGWKKDLK+QLDKHNNELEKV
Subjt:  AIEEELKVKNDIIKKQERLIEGWKKDLKEQLDKHNNELEKV

A0A1S3BZ89 mediator of RNA polymerase II transcription subunit 28

3.6e-68

100

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Query:  MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKVKNDIIKKQERLIEGWKKDLKEQLDKHNNELEKV
        AIEEELKVKNDIIKKQERLIEGWKKDLKEQLDKHNNELEKV
Subjt:  AIEEELKVKNDIIKKQERLIEGWKKDLKEQLDKHNNELEKV

A0A5A7TRZ8 Mediator of RNA polymerase II transcription subunit 28

3.6e-68

100

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Query:  MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKVKNDIIKKQERLIEGWKKDLKEQLDKHNNELEKV
        AIEEELKVKNDIIKKQERLIEGWKKDLKEQLDKHNNELEKV
Subjt:  AIEEELKVKNDIIKKQERLIEGWKKDLKEQLDKHNNELEKV

A0A6J1E897 mediator of RNA polymerase II transcription subunit 28

1.6e-63

92.2

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Query:  MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQ LDQQ+ +DPQ QSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKVKNDIIKKQERLIEGWKKDLKEQLDKHNNELEKV
        AIEEELK+K+DIIKKQERLIEGWKKDLK+QLDKHNNELEKV
Subjt:  AIEEELKVKNDIIKKQERLIEGWKKDLKEQLDKHNNELEKV

A0A6J1JAT8 mediator of RNA polymerase II transcription subunit 28

1.6e-63

92.2

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Query:  MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQ LDQQ+ +DPQ QSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKVKNDIIKKQERLIEGWKKDLKEQLDKHNNELEKV
        AIEEELK+K+DIIKKQERLIEGWKKDLK+QLDKHNNELEKV
Subjt:  AIEEELKVKNDIIKKQERLIEGWKKDLKEQLDKHNNELEKV

SwissProt top hits

e value

%identity

Alignment

Q9LFA5 Mediator of RNA polymerase II transcription subunit 28

1.3e-38

64.89

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Query:  SLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELKVKN
        S +  S +  +  ED++A V ALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYF+GL+RED+ P++ E+L+K+I+ +EEELK K+
Subjt:  SLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELKVKN

Query:  DIIKKQERLIEGWKKDLKEQLDKHNNELEKV
        ++IKK  RL +  +K +KEQ++KH +ELEKV
Subjt:  DIIKKQERLIEGWKKDLKEQLDKHNNELEKV

Arabidopsis top hits

e value

%identity

Alignment

AT3G52860.1 unknown protein

9.1e-40

64.89

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Query:  SLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELKVKN
        S +  S +  +  ED++A V ALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYF+GL+RED+ P++ E+L+K+I+ +EEELK K+
Subjt:  SLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELKVKN

Query:  DIIKKQERLIEGWKKDLKEQLDKHNNELEKV
        ++IKK  RL +  +K +KEQ++KH +ELEKV
Subjt:  DIIKKQERLIEGWKKDLKEQLDKHNNELEKV

Sequences

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CDS sequence

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ATGGCTGAACGACAATCACTTGACCAGCAACATTCACTTGATCCACAATCACAATCATCACAATCTCCAAGAGAAGATATGATTGCATATGTGATGGCCTTGGAA
GCTGCTCTGCTTCCGTGCTTGCCTGCTAGAGAACTACAGGCAATAGACCGTTCTCCTCACCCTTCTCATCAAGTTGACGTGGAGAGACATGCTAGGGATTTCATG
GAGGCAGCTAAAAAGCTTCAATTGTATTTCATTGGTTTACAGCGTGAGGATCAACCAACCAAAGTGGAAACACTAAGAAAGGAGATATCTGCCATTGAGGAGGAA
TTAAAGGTAAAAAATGACATAATCAAGAAACAGGAGAGGCTCATTGAAGGATGGAAGAAGGATTTGAAAGAGCAGTTAGACAAACATAACAATGAGTTAGAGAAA
GTTTAA

mRNA sequence

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GAGGAAAGAACATAACAATAATATATAAATTGGAGAAAAAAAGAGCGAAGAAGTGAAGGAAGGCGTAGGTAGTAGATTCCTCCATCTCCTCCTCCTTTCCTTTGC
GTCCGCCGTCCGACCAACAGTCCCTCGCGCATCAAACCTACGAGCTCTTGCTCACTCAGTTCGAACAAGTTGCGTAGCGTCGTTTATTCTCCATTTGGCACTCCA
AGTTGTGCATCACGTTTTTCACGACTGGGTGTGTCTTGCAGCAACGTTTTTGGCTTGTGGGATATGGCTGAACGACAATCACTTGACCAGCAACATTCACTTGAT
CCACAATCACAATCATCACAATCTCCAAGAGAAGATATGATTGCATATGTGATGGCCTTGGAAGCTGCTCTGCTTCCGTGCTTGCCTGCTAGAGAACTACAGGCA
ATAGACCGTTCTCCTCACCCTTCTCATCAAGTTGACGTGGAGAGACATGCTAGGGATTTCATGGAGGCAGCTAAAAAGCTTCAATTGTATTTCATTGGTTTACAG
CGTGAGGATCAACCAACCAAAGTGGAAACACTAAGAAAGGAGATATCTGCCATTGAGGAGGAATTAAAGGTAAAAAATGACATAATCAAGAAACAGGAGAGGCTC
ATTGAAGGATGGAAGAAGGATTTGAAAGAGCAGTTAGACAAACATAACAATGAGTTAGAGAAAGTTTAATAGAATAGGTTTGTGATCCCATGCTCTATTGTTTAG
TTGTTTGTAGATCTTGTTAATTACATACTTTAACTGTGAATGTAGGTGGGGGCTTATTGACAAGTCTTGGTTAATACATTCATTGTGCGG

Protein sequence

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MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEE
LKVKNDIIKKQERLIEGWKKDLKEQLDKHNNELEKV

IVF0008296 (gene) of Melon (IVF77) v1 genome