CuGenDBv2

Gene ID	IVF0008328
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr09:9827128..9827358
RNA-Seq Expression	IVF0008328
Synteny	IVF0008328
Gene Ontology terms	GO:0006413 - translational initiation (biological process) GO:0003743 - translation initiation factor activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0049584.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.61e-24

77.42

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Query:  MKNVAYGVIVLNLRDNVLREVIGEETAYGMWKKLEELYQSKDLPNRACVRERFFTFKMDCNK
        M+N  YG IVLNL D+VLRE IGEE AY MWKKLEELY+SKDL NRA  RERFFTFKMD NK
Subjt:  MKNVAYGVIVLNLRDNVLREVIGEETAYGMWKKLEELYQSKDLPNRACVRERFFTFKMDCNK

KAA0059755.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.07e-30

77.46

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Query:  MTQEEEETMKNVAYGVIVLNLRDNVLREVIGEETAYGMWKKLEELYQSKDLPNRACVRERFFTFKMDCNKS
        MTQE++ETM+  AYG IVLNL DNV+REVI EE AYGMWKKL+ELYQSKDL N A VRERFFTFKMD N S
Subjt:  MTQEEEETMKNVAYGVIVLNLRDNVLREVIGEETAYGMWKKLEELYQSKDLPNRACVRERFFTFKMDCNKS

KAA0063883.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

7.89e-34

83.1

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Query:  MTQEEEETMKNVAYGVIVLNLRDNVLREVIGEETAYGMWKKLEELYQSKDLPNRACVRERFFTFKMDCNKS
        MT EE+ETM+N  YG IVLNL DNVLREVI E+T YGMWKKLEELYQSKDLPNRA VRERFFTFKMD NKS
Subjt:  MTQEEEETMKNVAYGVIVLNLRDNVLREVIGEETAYGMWKKLEELYQSKDLPNRACVRERFFTFKMDCNKS

TYJ96960.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.37e-35

84.51

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Query:  MTQEEEETMKNVAYGVIVLNLRDNVLREVIGEETAYGMWKKLEELYQSKDLPNRACVRERFFTFKMDCNKS
        MTQEE+ETM+NVAYG IVLNL DNVL+EVIGEET YGMWKKLEELYQSKDLPNRA +RERF T+KMD NKS
Subjt:  MTQEEEETMKNVAYGVIVLNLRDNVLREVIGEETAYGMWKKLEELYQSKDLPNRACVRERFFTFKMDCNKS

TYK28110.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

8.50e-30

85.48

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Query:  MKNVAYGVIVLNLRDNVLREVIGEETAYGMWKKLEELYQSKDLPNRACVRERFFTFKMDCNK
        M+N  YG IVLNL DNVLREVIGEET YGMWKKLEELYQ KDLPNRA VRERFFTFKMD NK
Subjt:  MKNVAYGVIVLNLRDNVLREVIGEETAYGMWKKLEELYQSKDLPNRACVRERFFTFKMDCNK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7V1L8 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.0e-21

77.46

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Query:  MTQEEEETMKNVAYGVIVLNLRDNVLREVIGEETAYGMWKKLEELYQSKDLPNRACVRERFFTFKMDCNKS
        MTQE++ETM+  AYG IVLNL DNV+REVI EE AYGMWKKL+ELYQSKDL N A VRERFFTFKMD N S
Subjt:  MTQEEEETMKNVAYGVIVLNLRDNVLREVIGEETAYGMWKKLEELYQSKDLPNRACVRERFFTFKMDCNKS

A0A5A7V6Z9 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.3e-24

83.1

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Query:  MTQEEEETMKNVAYGVIVLNLRDNVLREVIGEETAYGMWKKLEELYQSKDLPNRACVRERFFTFKMDCNKS
        MT EE+ETM+N  YG IVLNL DNVLREVI E+T YGMWKKLEELYQSKDLPNRA VRERFFTFKMD NKS
Subjt:  MTQEEEETMKNVAYGVIVLNLRDNVLREVIGEETAYGMWKKLEELYQSKDLPNRACVRERFFTFKMDCNKS

A0A5D3BAU2 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.6e-25

84.51

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Query:  MTQEEEETMKNVAYGVIVLNLRDNVLREVIGEETAYGMWKKLEELYQSKDLPNRACVRERFFTFKMDCNKS
        MTQEE+ETM+NVAYG IVLNL DNVL+EVIGEET YGMWKKLEELYQSKDLPNRA +RERF T+KMD NKS
Subjt:  MTQEEEETMKNVAYGVIVLNLRDNVLREVIGEETAYGMWKKLEELYQSKDLPNRACVRERFFTFKMDCNKS

A0A5D3CYB2 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.5e-17

77.42

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Query:  MKNVAYGVIVLNLRDNVLREVIGEETAYGMWKKLEELYQSKDLPNRACVRERFFTFKMDCNK
        M+N  YG IVLNL D+VLRE IGEE AY MWKKLEELY+SKDL NRA  RERFFTFKMD NK
Subjt:  MKNVAYGVIVLNLRDNVLREVIGEETAYGMWKKLEELYQSKDLPNRACVRERFFTFKMDCNK

A0A5D3DXZ1 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.0e-21

85.48

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Query:  MKNVAYGVIVLNLRDNVLREVIGEETAYGMWKKLEELYQSKDLPNRACVRERFFTFKMDCNK
        M+N  YG IVLNL DNVLREVIGEET YGMWKKLEELYQ KDLPNRA VRERFFTFKMD NK
Subjt:  MKNVAYGVIVLNLRDNVLREVIGEETAYGMWKKLEELYQSKDLPNRACVRERFFTFKMDCNK

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.9e-05

33.33

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Query:  MTQEEEETMKNVAYGVIVLNLRDNVLREVIGEETAYGMWKKLEELYQSKDLPNRACVRERFFTFKMDCNKSF
        M  E+   +   A   I L+L D+V+  +I E+TA G+W +LE LY SK L N+  ++++ +   M    +F
Subjt:  MTQEEEETMKNVAYGVIVLNLRDNVLREVIGEETAYGMWKKLEELYQSKDLPNRACVRERFFTFKMDCNKSF

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGACTCAAGAAGAAGAAGAAACTATGAAAAATGTAGCCTATGGTGTCATAGTTTTAAACCTAAGAGACAATGTTCTTAGGGAGGTCATTGGTGAAGAAACAGCTTATGG
AATGTGGAAGAAATTAGAAGAACTTTATCAGTCCAAAGACTTACCAAACCGTGCATGCGTGAGAGAGAGATTCTTTACCTTCAAGATGGATTGCAACAAATCTTTTGACA
AAAAATCTTGA

mRNA sequence

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Protein sequence

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MTQEEEETMKNVAYGVIVLNLRDNVLREVIGEETAYGMWKKLEELYQSKDLPNRACVRERFFTFKMDCNKSFDKKS

IVF0008328 (gene) of Melon (IVF77) v1 genome