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IVF0008330 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0008330
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr06:6853693..6854056
RNA-Seq ExpressionIVF0008330
SyntenyIVF0008330
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037133.1 retrotransposon protein [Cucumis melo var. makuwa]5.16e-1581.63Show/hide
Query:  AMLWVSSPWVS-VKKKGRGDEKNGVKVGVFIMRRSSFVRGGILQKEKRV
        A +WVSSPWVS  +KKGRGDEKNGVKVGVFIMRRS FVRGGIL+KE+ V
Subjt:  AMLWVSSPWVS-VKKKGRGDEKNGVKVGVFIMRRSSFVRGGILQKEKRV

KAA0044825.1 transcription factor bHLH36-like [Cucumis melo var. makuwa]4.24e-2763.92Show/hide
Query:  MDKGVVELGRERERQRRQEIRKEINGGRRNEKVKIKNSQAMLWVSSPWVSV-KKKGRGDEKNGVKVGVFIMRRSSFVRGGILQKEKRVWVKKEREGF
        MDKGVVELGRERERQRRQEI                + + +L +    VSV KKKGRGDEKNGVKVGVF+M RSSFVRGG+L+K++ VWVKKEREGF
Subjt:  MDKGVVELGRERERQRRQEIRKEINGGRRNEKVKIKNSQAMLWVSSPWVSV-KKKGRGDEKNGVKVGVFIMRRSSFVRGGILQKEKRVWVKKEREGF

KAA0048509.1 CMP-sialic acid transporter 4 isoform X2 [Cucumis melo var. makuwa]2.60e-2665.22Show/hide
Query:  MDKGVVELGRERERQRRQEIRKEINGGRRNEKVKIKNSQAMLWVSSPWVSV-KKKGRGDEKNGVKVGVFIMRRSSF--VRGGILQKEKRVWV
        MDK VVELGRER+RQR+QEI + INGGRRNEK KIKNS   +WVSSPWVSV +KKGRGDEKNGVKV VF++  SS   +   +LQ   + W+
Subjt:  MDKGVVELGRERERQRRQEIRKEINGGRRNEKVKIKNSQAMLWVSSPWVSV-KKKGRGDEKNGVKVGVFIMRRSSF--VRGGILQKEKRVWV

KAA0054034.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.75e-1682Show/hide
Query:  MLWVSSPWVSV-KKKGRGDEKNGVKVGVFIMRRSSFVRGGILQKEKRVWV
        MLWVSSPWVSV KKKGRGDEKNG KVGVF+MRRSSFVR GIL+KE  V +
Subjt:  MLWVSSPWVSV-KKKGRGDEKNGVKVGVFIMRRSSFVRGGILQKEKRVWV

TYJ96889.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.06e-1981.48Show/hide
Query:  MLWVSSPWVSV-KKKGRGDEKNGVKVGVFIMRRSSFVRGGILQKEKRVWVKKER
        MLWVSSPWVSV KKKGRGDEKNG KVGVF+MRRSSFVR GIL+KE  VW  KE+
Subjt:  MLWVSSPWVSV-KKKGRGDEKNGVKVGVFIMRRSSFVRGGILQKEKRVWVKKER

TrEMBL top hitse value%identityAlignment
A0A5A7T2E4 Retrotransposon protein3.3e-1281.63Show/hide
Query:  AMLWVSSPWV-SVKKKGRGDEKNGVKVGVFIMRRSSFVRGGILQKEKRV
        A +WVSSPWV S +KKGRGDEKNGVKVGVFIMRRS FVRGGIL+KE+ V
Subjt:  AMLWVSSPWV-SVKKKGRGDEKNGVKVGVFIMRRSSFVRGGILQKEKRV

A0A5A7TTV0 Transcription factor bHLH36-like7.2e-2063.92Show/hide
Query:  MDKGVVELGRERERQRRQEIRKEINGGRRNEKVKIKNSQAMLWVSSPWVSV-KKKGRGDEKNGVKVGVFIMRRSSFVRGGILQKEKRVWVKKEREGF
        MDKGVVELGRERERQRRQEI                + + +L +    VSV KKKGRGDEKNGVKVGVF+M RSSFVRGG+L+K++ VWVKKEREGF
Subjt:  MDKGVVELGRERERQRRQEIRKEINGGRRNEKVKIKNSQAMLWVSSPWVSV-KKKGRGDEKNGVKVGVFIMRRSSFVRGGILQKEKRVWVKKEREGF

A0A5A7U4Z1 CMP-sialic acid transporter 4 isoform X21.2e-1965.22Show/hide
Query:  MDKGVVELGRERERQRRQEIRKEINGGRRNEKVKIKNSQAMLWVSSPWVSV-KKKGRGDEKNGVKVGVFIMRRS--SFVRGGILQKEKRVWV
        MDK VVELGRER+RQR+QEI + INGGRRNEK KIKNS   +WVSSPWVSV +KKGRGDEKNGVKV VF++  S  S +   +LQ   + W+
Subjt:  MDKGVVELGRERERQRRQEIRKEINGGRRNEKVKIKNSQAMLWVSSPWVSV-KKKGRGDEKNGVKVGVFIMRRS--SFVRGGILQKEKRVWV

A0A5A7UFR0 Ty3-gypsy retrotransposon protein1.1e-1280.39Show/hide
Query:  MLWVSSPWVSV-KKKGRGDEKNGVKVGVFIMRRSSFVRGGILQKEKRVWVK
        MLWVSSPWVSV KKKGRGDEKNG KVGVF+MRRSSFVR GIL+KE  V ++
Subjt:  MLWVSSPWVSV-KKKGRGDEKNGVKVGVFIMRRSSFVRGGILQKEKRVWVK

A0A5D3BCV7 Ty3-gypsy retrotransposon protein1.6e-1481.48Show/hide
Query:  MLWVSSPWVSV-KKKGRGDEKNGVKVGVFIMRRSSFVRGGILQKEKRVWVKKER
        MLWVSSPWVSV KKKGRGDEKNG KVGVF+MRRSSFVR GIL+KE  VW  KE+
Subjt:  MLWVSSPWVSV-KKKGRGDEKNGVKVGVFIMRRSSFVRGGILQKEKRVWVKKER

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAAAGGCGTTGTTGAGTTAGGGAGAGAAAGGGAGAGACAAAGAAGACAAGAAATCAGGAAAGAGATAAATGGAGGAAGAAGAAACGAAAAAGTAAAGATCAAGAA
CTCACAAGCGATGCTATGGGTCTCCTCGCCGTGGGTCTCTGTCAAGAAGAAAGGACGTGGAGATGAGAAGAATGGGGTTAAGGTTGGGGTTTTCATCATGCGTCGTTCGT
CGTTCGTGAGGGGAGGGATTTTGCAGAAGGAAAAGAGAGTGTGGGTGAAGAAGGAAAGGGAGGGATTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACAAAGGCGTTGTTGAGTTAGGGAGAGAAAGGGAGAGACAAAGAAGACAAGAAATCAGGAAAGAGATAAATGGAGGAAGAAGAAACGAAAAAGTAAAGATCAAGAA
CTCACAAGCGATGCTATGGGTCTCCTCGCCGTGGGTCTCTGTCAAGAAGAAAGGACGTGGAGATGAGAAGAATGGGGTTAAGGTTGGGGTTTTCATCATGCGTCGTTCGT
CGTTCGTGAGGGGAGGGATTTTGCAGAAGGAAAAGAGAGTGTGGGTGAAGAAGGAAAGGGAGGGATTTTGA
Protein sequenceShow/hide protein sequence
MDKGVVELGRERERQRRQEIRKEINGGRRNEKVKIKNSQAMLWVSSPWVSVKKKGRGDEKNGVKVGVFIMRRSSFVRGGILQKEKRVWVKKEREGF