; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0008353 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0008353
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationchr06:13941519..13942364
RNA-Seq ExpressionIVF0008353
SyntenyIVF0008353
Gene Ontology termsGO:0098869 - cellular oxidant detoxification (biological process)
GO:0004601 - peroxidase activity (molecular function)
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037057.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]3.61e-11062.77Show/hide
Query:  MERLVDEMISSSIIRPSKSPYSSPVLLIRRKDRSWRLCVDYRALNNVTIPEKFPIPVLEELFDELKGSNMFSKIDLKAEYHQIQMCPEDIEKTAFRTHE-
        MERLVDEM+SS IIR SKSPYSSPVLL+R+KD SWR CVDYRALNNVTIP+KFPIPV+EELFDELKG+++FSKIDLKA YHQI+MC EDIEKTAFRTHE 
Subjt:  MERLVDEMISSSIIRPSKSPYSSPVLLIRRKDRSWRLCVDYRALNNVTIPEKFPIPVLEELFDELKGSNMFSKIDLKAEYHQIQMCPEDIEKTAFRTHE-

Query:  ------------------------------------------IYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRIGYLGHFISEEGIEVDPEKI
                                                  +YSQG+ EH+ HLEVVLGLLKE ELYVNLEKCSFAK RI YLGHFISE+GIE DPEKI
Subjt:  ------------------------------------------IYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRIGYLGHFISEEGIEVDPEKI

Query:  RVIKEWPVPTNVREMH---------------YGTMAASLTLLLKTGGYKWNEEAEVAFEKPKMDMMTLPVLAMPDFHLPFEI
        R + EWP  TNVRE+                YG +AA LT LLK G YKW+ E E AF+K K  MMTLPVLAMPDF+LPFEI
Subjt:  RVIKEWPVPTNVREMH---------------YGTMAASLTLLLKTGGYKWNEEAEVAFEKPKMDMMTLPVLAMPDFHLPFEI

KAA0039715.1 Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa]5.27e-11159.57Show/hide
Query:  MERLVDEMISSSIIRPSKSPYSSPVLLIRRKDRSWRLCVDYRALNNVTIPEKFPIPVLEELFDELKGSNMFSKIDLKAEYHQIQMCPEDIEKTAFRTHE-
        MERLVDEM++S IIRPS SPYS PVLL+++KD SWR CVDYRALNNVTIP+KFPIPV+EELFDEL G+++FSKIDLKAEYHQI+MCPEDIEKTAFRTHE 
Subjt:  MERLVDEMISSSIIRPSKSPYSSPVLLIRRKDRSWRLCVDYRALNNVTIPEKFPIPVLEELFDELKGSNMFSKIDLKAEYHQIQMCPEDIEKTAFRTHE-

Query:  ------------------------------------------IYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRIGYLGHFISEEGIEVDPEKI
                                                  +YS+G+ EH  HLEVV G+L+E+ELY N +KC FA+PRI YLGH+IS +GIEVDPEKI
Subjt:  ------------------------------------------IYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRIGYLGHFISEEGIEVDPEKI

Query:  RVIKEWPVPTNVREM---------------HYGTMAASLTLLLKTGGYKWNEEAEVAFEKPKMDMMTLPVLAMPDFHLPFEI
        R ++EWP P+NVREM               +YG++AA LT LLK G YKW EE E AFEK K  MMTLPVLAMPDF+LPFE+
Subjt:  RVIKEWPVPTNVREM---------------HYGTMAASLTLLLKTGGYKWNEEAEVAFEKPKMDMMTLPVLAMPDFHLPFEI

KAA0042902.1 peroxidase 64 [Cucumis melo var. makuwa]1.56e-14879Show/hide
Query:  MERLVDEMISSSIIRPSKSPYSSPVLLIRRKDRSWRLCVDYRALNNVTIPEKFPIPVLEELFDELKGSNMFSKIDLKAEYHQIQMCPEDIEKTAFRTHE-
        MERLVDEMISSSIIRPSKSPYSSPVLLIRRKDRSWRLCVDYRALNNVTIPEKFPIPVLEELFDELKGSNMFSKIDLKAEYHQIQMCPEDIEKTAFRTHE 
Subjt:  MERLVDEMISSSIIRPSKSPYSSPVLLIRRKDRSWRLCVDYRALNNVTIPEKFPIPVLEELFDELKGSNMFSKIDLKAEYHQIQMCPEDIEKTAFRTHE-

Query:  -----------------------------------------IYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRIGYLGHFISEEGIEVDPEKIR
                                                 +YSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRIGYLGHFISEEGIEVDPEKIR
Subjt:  -----------------------------------------IYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRIGYLGHFISEEGIEVDPEKIR

Query:  VIKEWPVPTNVREMH---------------YGTMAASLTLLLKTGGYKWNEEAEVAFEKPKMDMMTLPVLAMPDFHLPFEI
        VIKEWPVPTNVREM                YGTMAASLTLLLKTGGYKWNEEAEVAFEKPKMDMMTLPVLAMPDFHLPFEI
Subjt:  VIKEWPVPTNVREMH---------------YGTMAASLTLLLKTGGYKWNEEAEVAFEKPKMDMMTLPVLAMPDFHLPFEI

KAA0053639.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.29e-10962.41Show/hide
Query:  MERLVDEMISSSIIRPSKSPYSSPVLLIRRKDRSWRLCVDYRALNNVTIPEKFPIPVLEELFDELKGSNMFSKIDLKAEYHQIQMCPEDIEKTAFRTHE-
        MERLVDEM+SS IIRPSKSPY+SPVLL+R+KD  WR CVDYRALNNVTIP KFPIPV+EELFDELKG+++FSKIDLK  YHQI+MCPEDIEKTAFRTHE 
Subjt:  MERLVDEMISSSIIRPSKSPYSSPVLLIRRKDRSWRLCVDYRALNNVTIPEKFPIPVLEELFDELKGSNMFSKIDLKAEYHQIQMCPEDIEKTAFRTHE-

Query:  ------------------------------------------IYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRIGYLGHFISEEGIEVDPEKI
                                                  +YSQG+ EH+ HLEVVLGLLKE ELY NLEKCSFAKPRI YLGHFISE+GIE  PEKI
Subjt:  ------------------------------------------IYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRIGYLGHFISEEGIEVDPEKI

Query:  RVIKEWPVPTNVREMH---------------YGTMAASLTLLLKTGGYKWNEEAEVAFEKPKMDMMTLPVLAMPDFHLPFEI
        R + EWP PTNVRE+                YG +AA LT LLK G YKW+ E E AF+K K  MMTLPVLAMPDF+LPFEI
Subjt:  RVIKEWPVPTNVREMH---------------YGTMAASLTLLLKTGGYKWNEEAEVAFEKPKMDMMTLPVLAMPDFHLPFEI

KAA0067256.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.67e-11063.12Show/hide
Query:  MERLVDEMISSSIIRPSKSPYSSPVLLIRRKDRSWRLCVDYRALNNVTIPEKFPIPVLEELFDELKGSNMFSKIDLKAEYHQIQMCPEDIEKTAFRTHE-
        MERLVDEM+SS IIRPSKSPYS PVLL+R+KD SWR CVDYRALNNVTIP+KFPIPV+EELFD+LKG+++FSKIDLK  YHQI+MCP+DIEKTAFRTHE 
Subjt:  MERLVDEMISSSIIRPSKSPYSSPVLLIRRKDRSWRLCVDYRALNNVTIPEKFPIPVLEELFDELKGSNMFSKIDLKAEYHQIQMCPEDIEKTAFRTHE-

Query:  ------------------------------------------IYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRIGYLGHFISEEGIEVDPEKI
                                                  +YSQG+ EHV HLEVVLGLLKE ELY NLEKCSFAKPRI YLGHFISE+GIE DPEKI
Subjt:  ------------------------------------------IYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRIGYLGHFISEEGIEVDPEKI

Query:  RVIKEWPVPTNVREMH---------------YGTMAASLTLLLKTGGYKWNEEAEVAFEKPKMDMMTLPVLAMPDFHLPFEI
        R + EWP PTNVRE+                YG +AA LT LLK G YKW+ EAE AF K K  MMTLPVLAMPDF+LPFEI
Subjt:  RVIKEWPVPTNVREMH---------------YGTMAASLTLLLKTGGYKWNEEAEVAFEKPKMDMMTLPVLAMPDFHLPFEI

TrEMBL top hitse value%identityAlignment
A0A5A7SS61 Ty3/gypsy retrotransposon protein5.7e-9263.12Show/hide
Query:  MERLVDEMISSSIIRPSKSPYSSPVLLIRRKDRSWRLCVDYRALNNVTIPEKFPIPVLEELFDELKGSNMFSKIDLKAEYHQIQMCPEDIEKTAFRTHE-
        MERLVDEM+SS IIRPSKSPYSSPVLL+R+KD SWR CVDYRALNNVTIP+KFPIPV+EELFDELKG+++FSK+DLKA YHQI+MCPEDIEKTAFRTHE 
Subjt:  MERLVDEMISSSIIRPSKSPYSSPVLLIRRKDRSWRLCVDYRALNNVTIPEKFPIPVLEELFDELKGSNMFSKIDLKAEYHQIQMCPEDIEKTAFRTHE-

Query:  ------------------------------------------IYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRIGYLGHFISEEGIEVDPEKI
                                                  IYSQG+ EHV HLEVVLGLL++ EL+VN+EKCSFAKPRI YLGHFISE+G+E DPEKI
Subjt:  ------------------------------------------IYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRIGYLGHFISEEGIEVDPEKI

Query:  RVIKEWPVPTNVREM---------------HYGTMAASLTLLLKTGGYKWNEEAEVAFEKPKMDMMTLPVLAMPDFHLPFEI
        R + EWP PTNVRE+               +YGT+AA LT LLK G YKW+ EAE AF K K  MMTLPVL MPDF+LPFEI
Subjt:  RVIKEWPVPTNVREM---------------HYGTMAASLTLLLKTGGYKWNEEAEVAFEKPKMDMMTLPVLAMPDFHLPFEI

A0A5A7T725 Ty3/gypsy retrotransposon protein5.7e-9263.12Show/hide
Query:  MERLVDEMISSSIIRPSKSPYSSPVLLIRRKDRSWRLCVDYRALNNVTIPEKFPIPVLEELFDELKGSNMFSKIDLKAEYHQIQMCPEDIEKTAFRTHE-
        MERLVDEM+SS IIRPSKSPYSSPVLL+R+KD SWR CVDYRALNNVTIP+KFPIPV+EELFDELKG+++FSK+DLKA YHQI+MCPEDIEKTAFRTHE 
Subjt:  MERLVDEMISSSIIRPSKSPYSSPVLLIRRKDRSWRLCVDYRALNNVTIPEKFPIPVLEELFDELKGSNMFSKIDLKAEYHQIQMCPEDIEKTAFRTHE-

Query:  ------------------------------------------IYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRIGYLGHFISEEGIEVDPEKI
                                                  IYSQG+ EHV HLEVVLGLL++ EL+VN+EKCSFAKPRI YLGHFISE+G+E DPEKI
Subjt:  ------------------------------------------IYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRIGYLGHFISEEGIEVDPEKI

Query:  RVIKEWPVPTNVREM---------------HYGTMAASLTLLLKTGGYKWNEEAEVAFEKPKMDMMTLPVLAMPDFHLPFEI
        R + EWP PTNVRE+               +YGT+AA LT LLK G YKW+ EAE AF K K  MMTLPVL MPDF+LPFEI
Subjt:  RVIKEWPVPTNVREM---------------HYGTMAASLTLLLKTGGYKWNEEAEVAFEKPKMDMMTLPVLAMPDFHLPFEI

A0A5D3C1Z4 Peroxidase 647.4e-11679Show/hide
Query:  MERLVDEMISSSIIRPSKSPYSSPVLLIRRKDRSWRLCVDYRALNNVTIPEKFPIPVLEELFDELKGSNMFSKIDLKAEYHQIQMCPEDIEKTAFRTHE-
        MERLVDEMISSSIIRPSKSPYSSPVLLIRRKDRSWRLCVDYRALNNVTIPEKFPIPVLEELFDELKGSNMFSKIDLKAEYHQIQMCPEDIEKTAFRTHE 
Subjt:  MERLVDEMISSSIIRPSKSPYSSPVLLIRRKDRSWRLCVDYRALNNVTIPEKFPIPVLEELFDELKGSNMFSKIDLKAEYHQIQMCPEDIEKTAFRTHE-

Query:  -----------------------------------------IYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRIGYLGHFISEEGIEVDPEKIR
                                                 +YSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRIGYLGHFISEEGIEVDPEKIR
Subjt:  -----------------------------------------IYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRIGYLGHFISEEGIEVDPEKIR

Query:  VIKEWPVPTNVREMH---------------YGTMAASLTLLLKTGGYKWNEEAEVAFEKPKMDMMTLPVLAMPDFHLPFEI
        VIKEWPVPTNVREM                YGTMAASLTLLLKTGGYKWNEEAEVAFEKPKMDMMTLPVLAMPDFHLPFEI
Subjt:  VIKEWPVPTNVREMH---------------YGTMAASLTLLLKTGGYKWNEEAEVAFEKPKMDMMTLPVLAMPDFHLPFEI

A0A5D3C9P5 Ty3/gypsy retrotransposon protein5.7e-9263.12Show/hide
Query:  MERLVDEMISSSIIRPSKSPYSSPVLLIRRKDRSWRLCVDYRALNNVTIPEKFPIPVLEELFDELKGSNMFSKIDLKAEYHQIQMCPEDIEKTAFRTHE-
        MERLVDEM+SS IIRPSKSPYSSPVLL+R+KD SWR CVDYRALNNVTIP+KFPIPV+EELFDELKG+++FSK+DLKA YHQI+MCPEDIEKTAFRTHE 
Subjt:  MERLVDEMISSSIIRPSKSPYSSPVLLIRRKDRSWRLCVDYRALNNVTIPEKFPIPVLEELFDELKGSNMFSKIDLKAEYHQIQMCPEDIEKTAFRTHE-

Query:  ------------------------------------------IYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRIGYLGHFISEEGIEVDPEKI
                                                  IYSQG+ EHV HLEVVLGLL++ EL+VN+EKCSFAKPRI YLGHFISE+G+E DPEKI
Subjt:  ------------------------------------------IYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRIGYLGHFISEEGIEVDPEKI

Query:  RVIKEWPVPTNVREM---------------HYGTMAASLTLLLKTGGYKWNEEAEVAFEKPKMDMMTLPVLAMPDFHLPFEI
        R + EWP PTNVRE+               +YGT+AA LT LLK G YKW+ EAE AF K K  MMTLPVL MPDF+LPFEI
Subjt:  RVIKEWPVPTNVREM---------------HYGTMAASLTLLLKTGGYKWNEEAEVAFEKPKMDMMTLPVLAMPDFHLPFEI

A0A5D3DMY9 Ty3/gypsy retrotransposon protein5.7e-9263.12Show/hide
Query:  MERLVDEMISSSIIRPSKSPYSSPVLLIRRKDRSWRLCVDYRALNNVTIPEKFPIPVLEELFDELKGSNMFSKIDLKAEYHQIQMCPEDIEKTAFRTHE-
        MERLVDEM+SS IIRPSKSPYSSPVLL+R+KD SWR CVDYRALNNVTIP+KFPIPV+EELFDELKG+++FSK+DLKA YHQI+MCPEDIEKTAFRTHE 
Subjt:  MERLVDEMISSSIIRPSKSPYSSPVLLIRRKDRSWRLCVDYRALNNVTIPEKFPIPVLEELFDELKGSNMFSKIDLKAEYHQIQMCPEDIEKTAFRTHE-

Query:  ------------------------------------------IYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRIGYLGHFISEEGIEVDPEKI
                                                  IYSQG+ EHV HLEVVLGLL++ EL+VN+EKCSFAKPRI YLGHFISE+G+E DPEKI
Subjt:  ------------------------------------------IYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRIGYLGHFISEEGIEVDPEKI

Query:  RVIKEWPVPTNVREM---------------HYGTMAASLTLLLKTGGYKWNEEAEVAFEKPKMDMMTLPVLAMPDFHLPFEI
        R + EWP PTNVRE+               +YGT+AA LT LLK G YKW+ EAE AF K K  MMTLPVL MPDF+LPFEI
Subjt:  RVIKEWPVPTNVREM---------------HYGTMAASLTLLLKTGGYKWNEEAEVAFEKPKMDMMTLPVLAMPDFHLPFEI

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.61.2e-3028.72Show/hide
Query:  MERLVDEMISSSIIRPSKSPYSSPVLLIRRKD-----RSWRLCVDYRALNNVTIPEKFPIPVLEELFDELKGSNMFSKIDLKAEYHQIQMCPEDIEKTAF
        +E  + +M++  IIR S SPY+SP+ ++ +K      + +R+ +DYR LN +T+ ++ PIP ++E+  +L   N F+ IDL   +HQI+M PE + KTAF
Subjt:  MERLVDEMISSSIIRPSKSPYSSPVLLIRRKD-----RSWRLCVDYRALNNVTIPEKFPIPVLEELFDELKGSNMFSKIDLKAEYHQIQMCPEDIEKTAF

Query:  RTHE-------------------------------------------IYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRIGYLGHFISEEGIEV
         T                                             ++S  L EH+  L +V   L +  L + L+KC F K    +LGH ++ +GI+ 
Subjt:  RTHE-------------------------------------------IYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRIGYLGHFISEEGIEV

Query:  DPEKIRVIKEWPVPTNVREM---------------HYGTMAASLTLLLKTGGY--KWNEEAEVAFEKPKMDMMTLPVLAMPDFHLPFEI
        +PEKI  I+++P+PT  +E+               ++  +A  +T  LK        N E + AF+K K  +   P+L +PDF   F +
Subjt:  DPEKIRVIKEWPVPTNVREM---------------HYGTMAASLTLLLKTGGY--KWNEEAEVAFEKPKMDMMTLPVLAMPDFHLPFEI

P20825 Retrovirus-related Pol polyprotein from transposon 2975.4e-3129.27Show/hide
Query:  MERLVDEMISSSIIRPSKSPYSSPVLLIRRKD-----RSWRLCVDYRALNNVTIPEKFPIPVLEELFDELKGSNMFSKIDLKAEYHQIQMCPEDIEKTAF
        +E  V EM++  +IR S SPY+SP  ++ +K        +R+ +DYR LN +TIP+++PIP ++E+  +L     F+ IDL   +HQI+M  E I KTAF
Subjt:  MERLVDEMISSSIIRPSKSPYSSPVLLIRRKD-----RSWRLCVDYRALNNVTIPEKFPIPVLEELFDELKGSNMFSKIDLKAEYHQIQMCPEDIEKTAF

Query:  RTHE-------------------------------------------IYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRIGYLGHFISEEGIEV
         T                                             I+S  L EH++ +++V   L +  L + L+KC F K    +LGH ++ +GI+ 
Subjt:  RTHE-------------------------------------------IYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRIGYLGHFISEEGIEV

Query:  DPEKIRVIKEWPVPTNVREM---------------HYGTMAASLTLLLKTGGYKWNEEAEV--AFEKPKMDMMTLPVLAMPDFHLPF
        +P K++ I  +P+PT  +E+               +Y  +A  +T  LK       ++ E   AFEK K  ++  P+L +PDF   F
Subjt:  DPEKIRVIKEWPVPTNVREM---------------HYGTMAASLTLLLKTGGYKWNEEAEV--AFEKPKMDMMTLPVLAMPDFHLPF

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.2e-2729.74Show/hide
Query:  MERLVDEMISSSIIRPSKSPYSSPVLLIRRKDRSWRLCVDYRALNNVTIPEKFPIPVLEELFDELKGSNMFSKIDLKAEYHQIQMCPEDIEKTAFRTHE-
        + ++V +++ +  I PSKSP SSPV+L+ +KD ++RLCVDYR LN  TI + FP+P ++ L   +  + +F+ +DL + YHQI M P+D  KTAF T   
Subjt:  MERLVDEMISSSIIRPSKSPYSSPVLLIRRKDRSWRLCVDYRALNNVTIPEKFPIPVLEELFDELKGSNMFSKIDLKAEYHQIQMCPEDIEKTAFRTHE-

Query:  ----------------------------------------IYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRIGYLGHFISEEGIEVDPEKIRV
                                                I+S+   EH  HL+ VL  LK   L V  +KC FA     +LG+ I  + I     K   
Subjt:  ----------------------------------------IYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRIGYLGHFISEEGIEVDPEKIRV

Query:  IKEWPVPTNVREM---------------HYGTMAASLTLLLKTGGYKWNEEAEVAFEKPKMDMMTLPVL
        I+++P P  V++                +   +A  + L +     +W E+ + A EK K  +   PVL
Subjt:  IKEWPVPTNVREM---------------HYGTMAASLTLLLKTGGYKWNEEAEVAFEKPKMDMMTLPVL

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus8.6e-2931.82Show/hide
Query:  MERLVDEMISSSIIRPSKSPYSSPVLLIRRK-----DRSWRLCVDYRALNNVTIPEKFPIPVLEELFDELKGSNMFSKIDLKAEYHQIQMCPEDIEKTAF
        +ER +DE++   IIRPS SPY+SP+ ++ +K     ++ +R+ VD++ LN VTIP+ +PIP +      L  +  F+ +DL + +HQI M   DI KTAF
Subjt:  MERLVDEMISSSIIRPSKSPYSSPVLLIRRK-----DRSWRLCVDYRALNNVTIPEKFPIPVLEELFDELKGSNMFSKIDLKAEYHQIQMCPEDIEKTAF

Query:  RTHE-------------------------------------------IYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRIGYLGHFISEEGIEV
         T                                             ++S+    H  +L +VL  L +  L VNLEK  F   ++ +LG+ ++ +GI+ 
Subjt:  RTHE-------------------------------------------IYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRIGYLGHFISEEGIEV

Query:  DPEKIRVIKEWPVPTNVREM
        DP+K+R I E P PT+V+E+
Subjt:  DPEKIRVIKEWPVPTNVREM

Q99315 Transposon Ty3-G Gag-Pol polyprotein4.7e-2729.37Show/hide
Query:  MERLVDEMISSSIIRPSKSPYSSPVLLIRRKDRSWRLCVDYRALNNVTIPEKFPIPVLEELFDELKGSNMFSKIDLKAEYHQIQMCPEDIEKTAFRTHE-
        + ++V +++ +  I PSKSP SSPV+L+ +KD ++RLCVDYR LN  TI + FP+P ++ L   +  + +F+ +DL + YHQI M P+D  KTAF T   
Subjt:  MERLVDEMISSSIIRPSKSPYSSPVLLIRRKDRSWRLCVDYRALNNVTIPEKFPIPVLEELFDELKGSNMFSKIDLKAEYHQIQMCPEDIEKTAFRTHE-

Query:  ----------------------------------------IYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRIGYLGHFISEEGIEVDPEKIRV
                                                I+S+   EH  HL+ VL  LK   L V  +KC FA     +LG+ I  + I     K   
Subjt:  ----------------------------------------IYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRIGYLGHFISEEGIEVDPEKIRV

Query:  IKEWPVPTNVREM---------------HYGTMAASLTLLLKTGGYKWNEEAEVAFEKPKMDMMTLPVL
        I+++P P  V++                +   +A  + L +     +W E+ + A +K K  +   PVL
Subjt:  IKEWPVPTNVREM---------------HYGTMAASLTLLLKTGGYKWNEEAEVAFEKPKMDMMTLPVL

Arabidopsis top hitse value%identityAlignment
ATMG00850.1 DNA/RNA polymerases superfamily protein2.6e-0451.43Show/hide
Query:  MERLVDEMISSSIIRPSKSPYSSPVLLIRRKDRSW
        ++  + EM+ + II+PS SPYSSPVLL+++KD  W
Subjt:  MERLVDEMISSSIIRPSKSPYSSPVLLIRRKDRSW

ATMG00860.1 DNA/RNA polymerases superfamily protein1.4e-2139.69Show/hide
Query:  VHHLEVVLGLLKENELYVNLEKCSFAKPRIGYLG--HFISEEGIEVDPEKIRVIKEWPVPTNVREM---------------HYGTMAASLTLLLKTGGYK
        ++HL +VL + ++++ Y N +KC+F +P+I YLG  H IS EG+  DP K+  +  WP P N  E+               +YG +   LT LLK    K
Subjt:  VHHLEVVLGLLKENELYVNLEKCSFAKPRIGYLG--HFISEEGIEVDPEKIRVIKEWPVPTNVREM---------------HYGTMAASLTLLLKTGGYK

Query:  WNEEAEVAFEKPKMDMMTLPVLAMPDFHLPF
        W E A +AF+  K  + TLPVLA+PD  LPF
Subjt:  WNEEAEVAFEKPKMDMMTLPVLAMPDFHLPF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAGACTGGTAGATGAGATGATATCCTCTAGCATTATACGACCGAGCAAGAGCCCGTACTCAAGTCCAGTGTTGCTGATAAGAAGAAAAGATAGGAGTTGGAGGTT
GTGCGTAGATTATCGAGCCTTGAATAATGTAACCATCCCGGAAAAATTCCCTATCCCAGTTCTAGAAGAACTATTTGATGAGTTGAAGGGGTCCAACATGTTCTCTAAGA
TAGATCTCAAGGCTGAATACCACCAAATACAAATGTGTCCTGAGGATATTGAAAAGACGGCTTTCAGAACCCACGAAATCTATAGTCAAGGGTTGATTGAACATGTGCAT
CACTTGGAGGTGGTCTTAGGATTGCTGAAGGAGAATGAGTTATACGTGAACCTGGAGAAGTGCAGCTTTGCCAAGCCACGAATCGGGTACTTAGGCCACTTTATATCGGA
GGAAGGCATAGAGGTGGACCCAGAAAAGATCAGGGTTATCAAGGAATGGCCGGTTCCCACCAACGTGCGGGAAATGCACTACGGTACTATGGCCGCCTCCCTGACCCTGC
TGCTAAAGACGGGAGGTTACAAATGGAATGAGGAGGCAGAGGTCGCCTTTGAAAAACCAAAAATGGACATGATGACACTCCCCGTGCTGGCCATGCCTGACTTTCACCTG
CCTTTTGAGATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAAGACTGGTAGATGAGATGATATCCTCTAGCATTATACGACCGAGCAAGAGCCCGTACTCAAGTCCAGTGTTGCTGATAAGAAGAAAAGATAGGAGTTGGAGGTT
GTGCGTAGATTATCGAGCCTTGAATAATGTAACCATCCCGGAAAAATTCCCTATCCCAGTTCTAGAAGAACTATTTGATGAGTTGAAGGGGTCCAACATGTTCTCTAAGA
TAGATCTCAAGGCTGAATACCACCAAATACAAATGTGTCCTGAGGATATTGAAAAGACGGCTTTCAGAACCCACGAAATCTATAGTCAAGGGTTGATTGAACATGTGCAT
CACTTGGAGGTGGTCTTAGGATTGCTGAAGGAGAATGAGTTATACGTGAACCTGGAGAAGTGCAGCTTTGCCAAGCCACGAATCGGGTACTTAGGCCACTTTATATCGGA
GGAAGGCATAGAGGTGGACCCAGAAAAGATCAGGGTTATCAAGGAATGGCCGGTTCCCACCAACGTGCGGGAAATGCACTACGGTACTATGGCCGCCTCCCTGACCCTGC
TGCTAAAGACGGGAGGTTACAAATGGAATGAGGAGGCAGAGGTCGCCTTTGAAAAACCAAAAATGGACATGATGACACTCCCCGTGCTGGCCATGCCTGACTTTCACCTG
CCTTTTGAGATTTAG
Protein sequenceShow/hide protein sequence
MERLVDEMISSSIIRPSKSPYSSPVLLIRRKDRSWRLCVDYRALNNVTIPEKFPIPVLEELFDELKGSNMFSKIDLKAEYHQIQMCPEDIEKTAFRTHEIYSQGLIEHVH
HLEVVLGLLKENELYVNLEKCSFAKPRIGYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMHYGTMAASLTLLLKTGGYKWNEEAEVAFEKPKMDMMTLPVLAMPDFHL
PFEI