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IVF0008359 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0008359
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr12:10892668..10900707
RNA-Seq ExpressionIVF0008359
SyntenyIVF0008359
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054943.1 hypothetical protein E6C27_scaffold43052G00820 [Cucumis melo var. makuwa]3.88e-4072.55Show/hide
Query:  LTYVEIFSSKSLFKSTSGISLDCVIRRDRQSGIDIDMIQVIRRDRSQPDCLSVSFGYTTDQFVLGVPLGSPKTSYVPLGSHFARVREHASSWIPLFRTLI
        L +V  +S+    K    IS+DCV+R++ QSGIDIDMIQVIRRDRSQ DCLSVSFGYT DQF+LGVPLGS KTSYVP  SH ARVRE ASSWIPLF+TLI
Subjt:  LTYVEIFSSKSLFKSTSGISLDCVIRRDRQSGIDIDMIQVIRRDRSQPDCLSVSFGYTTDQFVLGVPLGSPKTSYVPLGSHFARVREHASSWIPLFRTLI

Query:  GS
        GS
Subjt:  GS

KAA0062513.1 hypothetical protein E6C27_scaffold7126G00040 [Cucumis melo var. makuwa]1.06e-3681.48Show/hide
Query:  DCVIRRDRQSGIDIDMIQVIRRDRSQPDCLSVSFGYTTDQFVLGVPLGSPKTSYVPLGSHFARVREHASSWIPLFRTLIGS
        DCV+RR+RQSGIDIDMI++IRRD SQPD LSVSFGYTT+QF+LGV LGSPKTSYVP GS  ARVRE ASSWIPLF TL+GS
Subjt:  DCVIRRDRQSGIDIDMIQVIRRDRSQPDCLSVSFGYTTDQFVLGVPLGSPKTSYVPLGSHFARVREHASSWIPLFRTLIGS

TYK06480.1 hypothetical protein E5676_scaffold70G00040 [Cucumis melo var. makuwa]2.27e-3680.25Show/hide
Query:  DCVIRRDRQSGIDIDMIQVIRRDRSQPDCLSVSFGYTTDQFVLGVPLGSPKTSYVPLGSHFARVREHASSWIPLFRTLIGS
        DCV+RRD QS IDIDMI+VIRRD SQPDCLSVSFGYT DQ VLGVPLGSPKT YVP GS  A VRE ASSW+PLFRTL+ S
Subjt:  DCVIRRDRQSGIDIDMIQVIRRDRSQPDCLSVSFGYTTDQFVLGVPLGSPKTSYVPLGSHFARVREHASSWIPLFRTLIGS

TYK22467.1 hypothetical protein E5676_scaffold21746G00090 [Cucumis melo var. makuwa]2.99e-3681.48Show/hide
Query:  DCVIRRDRQSGIDIDMIQVIRRDRSQPDCLSVSFGYTTDQFVLGVPLGSPKTSYVPLGSHFARVREHASSWIPLFRTLIGS
        DCV+RR+RQSGIDIDMI++IRRDRSQPD LSVSFGYTT+QF+LGV LGSPKTSYVP  S  ARVRE ASSWIPLF TL+GS
Subjt:  DCVIRRDRQSGIDIDMIQVIRRDRSQPDCLSVSFGYTTDQFVLGVPLGSPKTSYVPLGSHFARVREHASSWIPLFRTLIGS

TYK27687.1 hypothetical protein E5676_scaffold225G00160 [Cucumis melo var. makuwa]2.68e-4388.89Show/hide
Query:  DCVIRRDRQSGIDIDMIQVIRRDRSQPDCLSVSFGYTTDQFVLGVPLGSPKTSYVPLGSHFARVREHASSWIPLFRTLIGS
        DCV+RRDRQSGIDID+I+VIRRDRSQPDCLSVS GYTTDQFVLGVPLGSPKTSYVP GSH ARVRE ASSW+PLFRTL+GS
Subjt:  DCVIRRDRQSGIDIDMIQVIRRDRSQPDCLSVSFGYTTDQFVLGVPLGSPKTSYVPLGSHFARVREHASSWIPLFRTLIGS

TrEMBL top hitse value%identityAlignment
A0A5A7UG65 Uncharacterized protein1.5e-3172.55Show/hide
Query:  LTYVEIFSSKSLFKSTSGISLDCVIRRDRQSGIDIDMIQVIRRDRSQPDCLSVSFGYTTDQFVLGVPLGSPKTSYVPLGSHFARVREHASSWIPLFRTLI
        L +V  +S+    K    IS+DCV+R++ QSGIDIDMIQVIRRDRSQ DCLSVSFGYT DQF+LGVPLGS KTSYVP  SH ARVRE ASSWIPLF+TLI
Subjt:  LTYVEIFSSKSLFKSTSGISLDCVIRRDRQSGIDIDMIQVIRRDRSQPDCLSVSFGYTTDQFVLGVPLGSPKTSYVPLGSHFARVREHASSWIPLFRTLI

Query:  GS
        GS
Subjt:  GS

A0A5A7V376 Uncharacterized protein8.8e-2981.48Show/hide
Query:  DCVIRRDRQSGIDIDMIQVIRRDRSQPDCLSVSFGYTTDQFVLGVPLGSPKTSYVPLGSHFARVREHASSWIPLFRTLIGS
        DCV+RR+RQSGIDIDMI++IRRD SQPD LSVSFGYTT+QF+LGV LGSPKTSYVP GS  ARVRE ASSWIPLF TL+GS
Subjt:  DCVIRRDRQSGIDIDMIQVIRRDRSQPDCLSVSFGYTTDQFVLGVPLGSPKTSYVPLGSHFARVREHASSWIPLFRTLIGS

A0A5D3C571 Uncharacterized protein1.1e-2880.25Show/hide
Query:  DCVIRRDRQSGIDIDMIQVIRRDRSQPDCLSVSFGYTTDQFVLGVPLGSPKTSYVPLGSHFARVREHASSWIPLFRTLIGS
        DCV+RRD QS IDIDMI+VIRRD SQPDCLSVSFGYT DQ VLGVPLGSPKT YVP GS  A VRE ASSW+PLFRTL+ S
Subjt:  DCVIRRDRQSGIDIDMIQVIRRDRSQPDCLSVSFGYTTDQFVLGVPLGSPKTSYVPLGSHFARVREHASSWIPLFRTLIGS

A0A5D3DFJ7 Uncharacterized protein2.0e-2881.48Show/hide
Query:  DCVIRRDRQSGIDIDMIQVIRRDRSQPDCLSVSFGYTTDQFVLGVPLGSPKTSYVPLGSHFARVREHASSWIPLFRTLIGS
        DCV+RR+RQSGIDIDMI++IRRDRSQPD LSVSFGYTT+QF+LGV LGSPKTSYVP  S  ARVRE ASSWIPLF TL+GS
Subjt:  DCVIRRDRQSGIDIDMIQVIRRDRSQPDCLSVSFGYTTDQFVLGVPLGSPKTSYVPLGSHFARVREHASSWIPLFRTLIGS

A0A5D3DV76 Uncharacterized protein1.2e-3388.89Show/hide
Query:  DCVIRRDRQSGIDIDMIQVIRRDRSQPDCLSVSFGYTTDQFVLGVPLGSPKTSYVPLGSHFARVREHASSWIPLFRTLIGS
        DCV+RRDRQSGIDID+I+VIRRDRSQPDCLSVS GYTTDQFVLGVPLGSPKTSYVP GSH ARVRE ASSW+PLFRTL+GS
Subjt:  DCVIRRDRQSGIDIDMIQVIRRDRSQPDCLSVSFGYTTDQFVLGVPLGSPKTSYVPLGSHFARVREHASSWIPLFRTLIGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCGGCGATTCGCGGACGACGCACGAGGAACGCAGCTGGCTATTTCGTGGAGCGGCGACGAGCGGCGGCAGATCTGCTGTTGTGTGAGGCCGAGAAGGAATCGGA
AATGGATGGGGAGCCGCGGCAGACGACGGTGGCTGGTGGCTTCAACTACCGTGGATGGACGAGGCGGCAACGACGTGAGGCTCCAACGTGCGACGGTTGCAGGCCAGCGT
TGAACGGAAACGACGAAGAAGAATACTCGTCGGGTGAAGGTCGGGTGAAGGAAAAACGGAAGAAAAAGAAGAAGAAGAAGAAAATCGGGGGGGGGTGGGCGGCGCGCGAG
GGTATCCATGTGCCTTCACAATCTGATCTTACGTACGTTGAGATATTTTCATCCAAGTCATTATTTAAATCCACATCTGGCATATCATTGGACTGCGTAATCCGACGGGA
CCGCCAGTCTGGCATTGATATAGACATGATTCAAGTGATTCGACGGGATCGCTCGCAGCCCGATTGTCTTAGTGTTTCCTTTGGGTACACTACAGACCAGTTTGTCCTAG
GTGTTCCTTTGGGATCACCGAAGACCAGTTATGTTCCTCTGGGATCACATTTTGCACGTGTTCGGGAACATGCCAGTTCTTGGATACCACTTTTCAGGACCCTAATAGGA
AGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGCGGCGATTCGCGGACGACGCACGAGGAACGCAGCTGGCTATTTCGTGGAGCGGCGACGAGCGGCGGCAGATCTGCTGTTGTGTGAGGCCGAGAAGGAATCGGA
AATGGATGGGGAGCCGCGGCAGACGACGGTGGCTGGTGGCTTCAACTACCGTGGATGGACGAGGCGGCAACGACGTGAGGCTCCAACGTGCGACGGTTGCAGGCCAGCGT
TGAACGGAAACGACGAAGAAGAATACTCGTCGGGTGAAGGTCGGGTGAAGGAAAAACGGAAGAAAAAGAAGAAGAAGAAGAAAATCGGGGGGGGGTGGGCGGCGCGCGAG
GGTATCCATGTGCCTTCACAATCTGATCTTACGTACGTTGAGATATTTTCATCCAAGTCATTATTTAAATCCACATCTGGCATATCATTGGACTGCGTAATCCGACGGGA
CCGCCAGTCTGGCATTGATATAGACATGATTCAAGTGATTCGACGGGATCGCTCGCAGCCCGATTGTCTTAGTGTTTCCTTTGGGTACACTACAGACCAGTTTGTCCTAG
GTGTTCCTTTGGGATCACCGAAGACCAGTTATGTTCCTCTGGGATCACATTTTGCACGTGTTCGGGAACATGCCAGTTCTTGGATACCACTTTTCAGGACCCTAATAGGA
AGTTAA
Protein sequenceShow/hide protein sequence
MAAAIRGRRTRNAAGYFVERRRAAADLLLCEAEKESEMDGEPRQTTVAGGFNYRGWTRRQRREAPTCDGCRPALNGNDEEEYSSGEGRVKEKRKKKKKKKKIGGGWAARE
GIHVPSQSDLTYVEIFSSKSLFKSTSGISLDCVIRRDRQSGIDIDMIQVIRRDRSQPDCLSVSFGYTTDQFVLGVPLGSPKTSYVPLGSHFARVREHASSWIPLFRTLIG
S