CuGenDBv2

Gene ID	IVF0008394
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	classical arabinogalactan protein 1-like
Genome location	chr11:25098625..25099176
RNA-Seq Expression	IVF0008394
Synteny	IVF0008394
Gene Ontology terms	GO:0016020 - membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6605547.1 hypothetical protein SDJN03_02864, partial [Cucurbita argyrosperma subsp. sororia]

1.72e-33

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Query:  SSPAESPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDSGNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCF----------RQDNIRRS
        SSPAESPL SPPAPPPSDL P+PSPA V SP+P P+ SL ADSD  N  + GGG ++E SKGGMNGGKKAGIAVGVIAA CF          RQDNIRRS
Subjt:  SSPAESPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDSGNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCF----------RQDNIRRS

Query:  QYGSAARSSF
        Q+G+AARSSF
Subjt:  QYGSAARSSF

XP_008463942.2 PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1 [Cucumis melo]

4.27e-58

74.55

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Query:  MAKTIHLSCLLFIFLSLS---SMSLSLWNYR---------------TNFLHLRLLSSPAESPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDS
        MAKTIHLSCLLFIFLSL    S SL L +                 T F ++   SSPAESPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDS
Subjt:  MAKTIHLSCLLFIFLSLS---SMSLSLWNYR---------------TNFLHLRLLSSPAESPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDS

Query:  GNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCF----------RQDNIRRSQYGSAARSSF
        GNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCF          RQDNIRRSQYGSAARSSF
Subjt:  GNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCF----------RQDNIRRSQYGSAARSSF

XP_011656995.1 proline-rich receptor-like protein kinase PERK9 [Cucumis sativus]

2.60e-47

66.06

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Query:  MAKTIHLSCLLFIFLSL-SSMSLSLWNYR-----------------TNFLHLRLLSSPAESPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDS
        M KTIHLSCLLFIF+SL +++S SL   +                 T   H    SSP ESPLHSPPAPPPSDLP TPSPAP+L P  +PS S AADSDS
Subjt:  MAKTIHLSCLLFIFLSL-SSMSLSLWNYR-----------------TNFLHLRLLSSPAESPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDS

Query:  GNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCF----------RQDNIRRSQYGSAARSSF
         NITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCF          RQDNIRRSQYG+AARSSF
Subjt:  GNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCF----------RQDNIRRSQYGSAARSSF

XP_022995398.1 lysine-rich arabinogalactan protein 18-like [Cucurbita maxima]

1.72e-33

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Query:  SSPAESPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDSGNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCF----------RQDNIRRS
        SSPAESPL SPPAPPPSDL P+PSPA V SP+P P+ SL ADSD  N  + GGG ++E SKGGMNGGKKAGIAVGVIAA CF          RQDNIRRS
Subjt:  SSPAESPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDSGNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCF----------RQDNIRRS

Query:  QYGSAARSSF
        Q+G+AARSSF
Subjt:  QYGSAARSSF

XP_023534499.1 alpha carbonic anhydrase 8-like [Cucurbita pepo subsp. pepo]

1.72e-33

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Query:  SSPAESPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDSGNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCF----------RQDNIRRS
        SSPAESPL SPPAPPPSDL P+PSPA V SP+P P+ SL ADSD  N  + GGG ++E SKGGMNGGKKAGIAVGVIAA CF          RQDNIRRS
Subjt:  SSPAESPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDSGNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCF----------RQDNIRRS

Query:  QYGSAARSSF
        Q+G+AARSSF
Subjt:  QYGSAARSSF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KGE9 Uncharacterized protein

1.8e-36

66.06

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Query:  MAKTIHLSCLLFIFLSL-SSMSLSLWNYR-----------------TNFLHLRLLSSPAESPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDS
        M KTIHLSCLLFIF+SL +++S SL   +                 T   H    SSP ESPLHSPPAPPPSDLP TPSPAP+L P  +PS S AADSDS
Subjt:  MAKTIHLSCLLFIFLSL-SSMSLSLWNYR-----------------TNFLHLRLLSSPAESPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDS

Query:  GNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCF----------RQDNIRRSQYGSAARSSF
         NITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCF          RQDNIRRSQYG+AARSSF
Subjt:  GNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCF----------RQDNIRRSQYGSAARSSF

A0A1S3CKF5 pollen-specific leucine-rich repeat extensin-like protein 1

1.1e-44

74.55

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Query:  MAKTIHLSCLLFIFLSL---SSMSLSLWNY---------------RTNFLHLRLLSSPAESPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDS
        MAKTIHLSCLLFIFLSL    S SL L +                 T F ++   SSPAESPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDS
Subjt:  MAKTIHLSCLLFIFLSL---SSMSLSLWNY---------------RTNFLHLRLLSSPAESPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDS

Query:  GNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCF----------RQDNIRRSQYGSAARSSF
        GNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCF          RQDNIRRSQYGSAARSSF
Subjt:  GNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCF----------RQDNIRRSQYGSAARSSF

A0A5D3CV84 Pollen-specific leucine-rich repeat extensin-like protein 1

1.1e-44

74.55

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Query:  MAKTIHLSCLLFIFLSL---SSMSLSLWNY---------------RTNFLHLRLLSSPAESPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDS
        MAKTIHLSCLLFIFLSL    S SL L +                 T F ++   SSPAESPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDS
Subjt:  MAKTIHLSCLLFIFLSL---SSMSLSLWNY---------------RTNFLHLRLLSSPAESPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDS

Query:  GNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCF----------RQDNIRRSQYGSAARSSF
        GNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCF          RQDNIRRSQYGSAARSSF
Subjt:  GNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCF----------RQDNIRRSQYGSAARSSF

A0A6J1JA87 proline-rich receptor-like protein kinase PERK12

7.2e-25

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Query:  SSPAESPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDSGNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCF----------RQDNIRRS
        SSP ESPLHSPPAPPPSDL P+PSPA V SP+P  + + AADSD  N  S  GG +SE SKGGMNGGKKAGIAVGVIAA CF          RQDNIRRS
Subjt:  SSPAESPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDSGNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCF----------RQDNIRRS

Query:  QYGSAARSSF
        QYG+AARSSF
Subjt:  QYGSAARSSF

A0A6J1K7T9 lysine-rich arabinogalactan protein 18-like

5.0e-26

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Query:  SSPAESPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDSGNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCF----------RQDNIRRS
        SSPAESPL SPPAPPPSDL P+PSPA V SP+P P+ SL ADSD  N  + GGG ++E SKGGMNGGKKAGIAVGVIAA CF          RQDNIRRS
Subjt:  SSPAESPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDSGNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCF----------RQDNIRRS

Query:  QYGSAARSSF
        Q+G+AARSSF
Subjt:  QYGSAARSSF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G45230.1 hydroxyproline-rich glycoprotein family protein

3.5e-08

43.2

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Query:  SSPAESPL-----------HSP---PAPPPSDLPPTP----SPAPVLSPAPTPSHSLAADSDSGNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCF
        +SPAESP+           HSP   PA  PS  PP P    SP+   SP+P+P    A+D +  +IT   G +    S GGM+GGKK G+A G IAA+C 
Subjt:  SSPAESPL-----------HSP---PAPPPSDLPPTP----SPAPVLSPAPTPSHSLAADSDSGNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCF

Query:  ----------RQDNIRRSQYGSAAR
                  RQ+NIRRS+YG AAR
Subjt:  ----------RQDNIRRSQYGSAAR

Sequences

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CDS sequence

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ATGGCGAAAACCATTCATCTCTCTTGTCTTCTTTTCATCTTCCTTTCCCTGTCATCAATGTCTCTTTCTCTTTGGAACTATCGCACCAACTTCCTCCATCTACGTCTCCT
CAGTTCTCCGGCCGAATCTCCTCTCCATTCTCCTCCTGCGCCTCCTCCTTCAGATCTCCCTCCCACTCCATCTCCAGCGCCTGTTCTTTCTCCTGCACCCACTCCTTCTC
ATTCTCTAGCGGCCGATAGTGATTCCGGTAATATTACTTCCGGTGGCGGTGGAGAAGACTCCGAAGTCTCTAAAGGCGGGATGAATGGAGGAAAGAAGGCTGGAATTGCA
GTTGGAGTGATTGCGGCACTGTGTTTTCGTCAGGATAACATTCGTCGATCTCAGTACGGGAGTGCTGCTAGGTCTTCGTTTTGTGAGTTATTTGGAATTGAATGGCCATG
GTACGGAAATCTCTGCTTAATTAGAAACGGATAG

mRNA sequence

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Protein sequence

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MAKTIHLSCLLFIFLSLSSMSLSLWNYRTNFLHLRLLSSPAESPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDSGNITSGGGGEDSEVSKGGMNGGKKAGIA
VGVIAALCFRQDNIRRSQYGSAARSSFCELFGIEWPWYGNLCLIRNG

IVF0008394 (gene) of Melon (IVF77) v1 genome