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IVF0008417 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0008417
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr06:8489316..8489504
RNA-Seq ExpressionIVF0008417
SyntenyIVF0008417
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041105.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.75e-2788.71Show/hide
Query:  MADITAEAVMAEMERKINFLMKAVEERDHEITALREQMRTRETAESSQTPVVKGTDKGKNVV
        MADITA+A M EMERKINFLMK VEERDHEITALREQ+RTRETAESSQTP+VK TDKGKNVV
Subjt:  MADITAEAVMAEMERKINFLMKAVEERDHEITALREQMRTRETAESSQTPVVKGTDKGKNVV

KAA0048603.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.48e-2895.16Show/hide
Query:  MADITAEAVMAEMERKINFLMKAVEERDHEITALREQMRTRETAESSQTPVVKGTDKGKNVV
        MADITAEA MAEMERKINFLMK VEERDHEITALREQMRTRETAESSQTPVVK TDKGKNVV
Subjt:  MADITAEAVMAEMERKINFLMKAVEERDHEITALREQMRTRETAESSQTPVVKGTDKGKNVV

KAA0054593.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.92e-2793.55Show/hide
Query:  MADITAEAVMAEMERKINFLMKAVEERDHEITALREQMRTRETAESSQTPVVKGTDKGKNVV
        MADIT EA MAEME+KINFLMKAVEERDHEITALREQMRTRETAESSQTPVVK TDKGKNVV
Subjt:  MADITAEAVMAEMERKINFLMKAVEERDHEITALREQMRTRETAESSQTPVVKGTDKGKNVV

TYK21903.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.39e-2788.71Show/hide
Query:  MADITAEAVMAEMERKINFLMKAVEERDHEITALREQMRTRETAESSQTPVVKGTDKGKNVV
        MADITA+A M EMERKINFLMK VEERDHEITALREQ+RTRETAESSQTP+VK TDKGKNVV
Subjt:  MADITAEAVMAEMERKINFLMKAVEERDHEITALREQMRTRETAESSQTPVVKGTDKGKNVV

TYK22865.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.13e-2790.32Show/hide
Query:  MADITAEAVMAEMERKINFLMKAVEERDHEITALREQMRTRETAESSQTPVVKGTDKGKNVV
        MADIT EA MAEM+RKINFLMK VEERDHEITALREQMRTRETAESSQTP+VK TDKGKNVV
Subjt:  MADITAEAVMAEMERKINFLMKAVEERDHEITALREQMRTRETAESSQTPVVKGTDKGKNVV

TrEMBL top hitse value%identityAlignment
A0A5A7T9K9 Ty3-gypsy retrotransposon protein9.4e-2193.55Show/hide
Query:  MADITAEAVMAEMERKINFLMKAVEERDHEITALREQMRTRETAESSQTPVVKGTDKGKNVV
        MADITAEA MAEMERKINFLMKA EERDHEITALREQMRTRET ESSQTPVVK TDKGKNVV
Subjt:  MADITAEAVMAEMERKINFLMKAVEERDHEITALREQMRTRETAESSQTPVVKGTDKGKNVV

A0A5A7TYE9 Ty3-gypsy retrotransposon protein3.2e-2195.16Show/hide
Query:  MADITAEAVMAEMERKINFLMKAVEERDHEITALREQMRTRETAESSQTPVVKGTDKGKNVV
        MADITAEA MAEMERKINFLMK VEERDHEITALREQMRTRETAESSQTPVVK TDKGKNVV
Subjt:  MADITAEAVMAEMERKINFLMKAVEERDHEITALREQMRTRETAESSQTPVVKGTDKGKNVV

A0A5A7UF60 Ty3-gypsy retrotransposon protein7.2e-2193.55Show/hide
Query:  MADITAEAVMAEMERKINFLMKAVEERDHEITALREQMRTRETAESSQTPVVKGTDKGKNVV
        MADIT EA MAEME+KINFLMKAVEERDHEITALREQMRTRETAESSQTPVVK TDKGKNVV
Subjt:  MADITAEAVMAEMERKINFLMKAVEERDHEITALREQMRTRETAESSQTPVVKGTDKGKNVV

A0A5A7UG56 Ty3-gypsy retrotransposon protein1.2e-2093.55Show/hide
Query:  MADITAEAVMAEMERKINFLMKAVEERDHEITALREQMRTRETAESSQTPVVKGTDKGKNVV
        MADITAEA M EMERKINFLMKAVEERDHEITALREQMRTRET ESSQTPVVK TDKGKNVV
Subjt:  MADITAEAVMAEMERKINFLMKAVEERDHEITALREQMRTRETAESSQTPVVKGTDKGKNVV

A0A5A7VDN4 Ty3-gypsy retrotransposon protein1.1e-2196.77Show/hide
Query:  MADITAEAVMAEMERKINFLMKAVEERDHEITALREQMRTRETAESSQTPVVKGTDKGKNVV
        MADITAEA MAEMERKINFLMKAVEERDHEITALREQMRTRETAESSQTPVVK TDKGKNVV
Subjt:  MADITAEAVMAEMERKINFLMKAVEERDHEITALREQMRTRETAESSQTPVVKGTDKGKNVV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGATATAACGGCCGAAGCTGTCATGGCAGAGATGGAGAGGAAAATTAACTTCCTGATGAAAGCTGTGGAGGAACGAGACCATGAAATCACAGCTTTGAGGGAGCA
AATGCGGACTCGTGAAACTGCTGAGTCAAGTCAAACTCCTGTTGTCAAAGGTACTGATAAAGGGAAGAATGTGGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGATATAACGGCCGAAGCTGTCATGGCAGAGATGGAGAGGAAAATTAACTTCCTGATGAAAGCTGTGGAGGAACGAGACCATGAAATCACAGCTTTGAGGGAGCA
AATGCGGACTCGTGAAACTGCTGAGTCAAGTCAAACTCCTGTTGTCAAAGGTACTGATAAAGGGAAGAATGTGGTGTAG
Protein sequenceShow/hide protein sequence
MADITAEAVMAEMERKINFLMKAVEERDHEITALREQMRTRETAESSQTPVVKGTDKGKNVV