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IVF0008442 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0008442
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionCollagen triple helix repeat protein
Genome locationchr04:28449240..28449449
RNA-Seq ExpressionIVF0008442
SyntenyIVF0008442
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051389.1 Collagen triple helix repeat protein [Cucumis melo var. makuwa]2.13e-0872.97Show/hide
Query:  MDLGKRKSQTKTIDPTKRNNQSKTMDPTKRNSPAKRN
        MD  KRK QTKT+DPTKRNN++KTM+PTKR++P KRN
Subjt:  MDLGKRKSQTKTIDPTKRNNQSKTMDPTKRNSPAKRN
KAA0060038.1 hypothetical protein E6C27_scaffold340G00860 [Cucumis melo var. makuwa]9.45e-1083.78Show/hide
Query:  MDLGKRKSQTKTIDPTKRNNQSKTMDPTKRNSPAKRN
        MD  KRKSQTKT+DPTKRNNQ+KTMDPTKRNS  KRN
Subjt:  MDLGKRKSQTKTIDPTKRNNQSKTMDPTKRNSPAKRN
TYK22248.1 Collagen triple helix repeat protein [Cucumis melo var. makuwa]3.68e-0975.68Show/hide
Query:  MDLGKRKSQTKTIDPTKRNNQSKTMDPTKRNSPAKRN
        MD  KRK QTKT+DPTKRNN++KTM+PTKRN+P KRN
Subjt:  MDLGKRKSQTKTIDPTKRNNQSKTMDPTKRNSPAKRN
TrEMBL top hitse value%identityAlignment
A0A5A7UD84 Collagen triple helix repeat protein1.5e-0472.97Show/hide
Query:  MDLGKRKSQTKTIDPTKRNNQSKTMDPTKRNSPAKRN
        MD  KRK QTKT+DPTKRNN++KTM+PTKR++P KRN
Subjt:  MDLGKRKSQTKTIDPTKRNNQSKTMDPTKRNSPAKRN
A0A5A7UXT0 Uncharacterized protein1.4e-0583.78Show/hide
Query:  MDLGKRKSQTKTIDPTKRNNQSKTMDPTKRNSPAKRN
        MD  KRKSQTKT+DPTKRNNQ+KTMDPTKRNS  KRN
Subjt:  MDLGKRKSQTKTIDPTKRNNQSKTMDPTKRNSPAKRN
A0A5D3DFL7 Collagen triple helix repeat protein4.0e-0575.68Show/hide
Query:  MDLGKRKSQTKTIDPTKRNNQSKTMDPTKRNSPAKRN
        MD  KRK QTKT+DPTKRNN++KTM+PTKRN+P KRN
Subjt:  MDLGKRKSQTKTIDPTKRNNQSKTMDPTKRNSPAKRN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCTGGGGAAGAGGAAGAGTCAAACGAAAACTATAGATCCGACGAAGAGGAATAATCAGTCAAAAACTATGGATCCGACGAAGAGGAACAGTCCAGCGAAGAGGAA
TAAGGAAGAGGATGATTATTTGAGGAAGATGATGGAGATCGGAGGAAAAGGAAACCAACAAAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATCTGGGGAAGAGGAAGAGTCAAACGAAAACTATAGATCCGACGAAGAGGAATAATCAGTCAAAAACTATGGATCCGACGAAGAGGAACAGTCCAGCGAAGAGGAA
TAAGGAAGAGGATGATTATTTGAGGAAGATGATGGAGATCGGAGGAAAAGGAAACCAACAAAAGTAA
Protein sequenceShow/hide protein sequence
MDLGKRKSQTKTIDPTKRNNQSKTMDPTKRNSPAKRNKEEDDYLRKMMEIGGKGNQQK