CuGenDBv2

Gene ID	IVF0008496
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	KH domain-containing protein
Genome location	chr08:30242693..30242962
RNA-Seq Expression	IVF0008496
Synteny	IVF0008496
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR004088 - K Homology domain, type 1 IPR036612 - K Homology domain, type 1 superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0062429.1 KH domain-containing protein [Cucumis melo var. makuwa]

1.65e-48

98.84

Show/hide

Query:  MSHQYSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV
        MSHQYSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQ+
Subjt:  MSHQYSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV

KAG6578572.1 RNA-binding KH domain-containing protein RCF3, partial [Cucurbita argyrosperma subsp. sororia]

1.61e-34

85.37

Show/hide

Query:  YSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV
        YSPTLEA+L LQPRCSEKV+RD GIISF TRLLV T +I CLIGK GAIIT+LRRLTKANIRILSKENLPKVALEDDEMVQ+
Subjt:  YSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV

KAG7016130.1 KH domain-containing protein [Cucurbita argyrosperma subsp. argyrosperma]

1.93e-34

85.37

Show/hide

Query:  YSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV
        YSPTLEA+L LQPRCSEKV+RD GIISF TRLLV T +I CLIGK GAIIT+LRRLTKANIRILSKENLPKVALEDDEMVQ+
Subjt:  YSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV

KAG7033175.1 RNA-binding KH domain-containing protein RCF3, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.19e-34

85.37

Show/hide

Query:  YSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV
        YSPTLEA+L LQPRCSEKV+RD GIISF TRLLV T +I CLIGK GAIIT+LRRLTKANIRILSKENLPKVALEDDEMVQ+
Subjt:  YSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV

XP_022993579.1 KH domain-containing protein HEN4-like [Cucurbita maxima]

2.45e-34

85.37

Show/hide

Query:  YSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV
        YSPTLEA+L LQPRCSEKV+RD GIISF TRLLV T +I CLIGK GAIIT+LRRLTKANIRILSKENLPKVALEDDEMVQ+
Subjt:  YSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TBQ7 KH domain-containing protein

1.3e-28

85.37

Show/hide

Query:  YSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV
        YSPTLEA+L LQPRCSEKV+RD GIISF TRLLV T +I CLIGK GAIIT+LRRLTKANIRILSKENLPKVALEDDEMVQ+
Subjt:  YSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV

A0A5A7V9Q7 KH domain-containing protein

2.1e-37

98.84

Show/hide

Query:  MSHQYSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV
        MSHQYSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQ+
Subjt:  MSHQYSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV

A0A6J1FJS6 KH domain-containing protein HEN4-like

1.3e-28

85.37

Show/hide

Query:  YSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV
        YSPTLEA+L LQPRCSEKV+RD GIISF TRLLV T +I CLIGK GAIIT+LRRLTKANIRILSKENLPKVALEDDEMVQ+
Subjt:  YSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV

A0A6J1JP17 KH domain-containing protein HEN4-like

1.3e-28

85.37

Show/hide

Query:  YSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV
        YSPTLEA+L LQPRCSEKV+RD GIISF TRLLV T +I CLIGK GAIIT+LRRLTKANIRILSKENLPKVALEDDEMVQ+
Subjt:  YSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV

A0A6J1JYX2 KH domain-containing protein HEN4-like

1.3e-28

85.37

Show/hide

Query:  YSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV
        YSPTLEA+L LQPRCSEKV+RD GIISF TRLLV T +I CLIGK GAIIT+LRRLTKANIRILSKENLPKVALEDDEMVQ+
Subjt:  YSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV

SwissProt top hits

e value

%identity

Alignment

F4KDN0 KH domain-containing protein HEN4

6.3e-07

41.38

Show/hide

Query:  QYSPTLEASLLLQPRCSEKVQR---DFGIISFIT-RLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV
        Q SP  +A +L+  R  E       D G  S IT RL+V T QI C++GK G I++++R+ T A I+IL  E  PK   E+D++VQ+
Subjt:  QYSPTLEASLLLQPRCSEKVQR---DFGIISFIT-RLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV

Q8W4B1 RNA-binding KH domain-containing protein RCF3

6.9e-06

46.43

Show/hide

Query:  ITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKE-NLPKVALEDDEMVQVI
        +TRL+VS + + CL+GK G II ++R  TK +IRIL +E NLP+     +E+VQ++
Subjt:  ITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKE-NLPKVALEDDEMVQVI

Q9SR13 Flowering locus K homology domain

6.5e-04

40.74

Show/hide

Query:  TRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQVI
        TRLLV   Q   LIGK G  +  ++  +   +R+L  E+LP  AL+DD +V+V+
Subjt:  TRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQVI

Arabidopsis top hits

e value

%identity

Alignment

AT1G14170.1 RNA-binding KH domain-containing protein

7.8e-21

58.02

Show/hide

Query:  SPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV
        SP + A++ LQ RCSEKV +D   ++  TRLLVS+ QI CLIGK GA+I+++R +T+ANIRIL KE++PK+A ED+EMVQ+
Subjt:  SPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV

AT1G14170.2 RNA-binding KH domain-containing protein

7.8e-21

58.02

Show/hide

Query:  SPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV
        SP + A++ LQ RCSEKV +D   ++  TRLLVS+ QI CLIGK GA+I+++R +T+ANIRIL KE++PK+A ED+EMVQ+
Subjt:  SPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV

AT1G14170.3 RNA-binding KH domain-containing protein

7.8e-21

58.02

Show/hide

Query:  SPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV
        SP + A++ LQ RCSEKV +D   ++  TRLLVS+ QI CLIGK GA+I+++R +T+ANIRIL KE++PK+A ED+EMVQ+
Subjt:  SPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV

AT5G15270.1 RNA-binding KH domain-containing protein

1.5e-27

68.29

Show/hide

Query:  YSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV
        YSPT+EA + LQP+CS+KV+RD G++SF TRLLV + +I C++GK GAIIT++RR+TKANIRIL KENLPKVA +DDEMVQ+
Subjt:  YSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV

AT5G15270.2 RNA-binding KH domain-containing protein

1.5e-27

68.29

Show/hide

Query:  YSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV
        YSPT+EA + LQP+CS+KV+RD G++SF TRLLV + +I C++GK GAIIT++RR+TKANIRIL KENLPKVA +DDEMVQ+
Subjt:  YSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCGCACCAATATTCTCCTACACTTGAAGCTTCATTACTCTTGCAACCAAGATGCAGTGAGAAAGTACAAAGAGATTTTGGGATTATTTCATTCATAACCCGTCTGCT
TGTGTCTACCTTACAAATTAGTTGCTTAATTGGTAAAAATGGAGCTATCATTACCAAGTTGAGAAGGCTCACCAAGGCTAATATTCGAATATTGTCAAAGGAAAATCTCC
CTAAGGTTGCCTTGGAAGATGATGAAATGGTACAGGTGATTGTTAATTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MSHQYSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQVIVN

IVF0008496 (gene) of Melon (IVF77) v1 genome