; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0008527 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0008527
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRibonuclease H
Genome locationchr07:3295430..3296644
RNA-Seq ExpressionIVF0008527
SyntenyIVF0008527
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036934.1 uncharacterized protein E6C27_scaffold86G00070 [Cucumis melo var. makuwa]3.43e-25790.25Show/hide
Query:  MLVIHQVKEEWKTIDAKLVPYSQYVTKLSQNFEKISFNHVLREDNRMADALATLI------------------RVVPAYCMNVGNDNKPWYFDIKQYIKC
        MLVIHQVKEEW+  DAKLVPYSQYVTKLSQNFEKISF+HV REDNRMADALATL                   R VPAYCMNVGNDNKPWYFDIKQYIKC
Subjt:  MLVIHQVKEEWKTIDAKLVPYSQYVTKLSQNFEKISFNHVLREDNRMADALATLI------------------RVVPAYCMNVGNDNKPWYFDIKQYIKC

Query:  REYPYEASENDKCTIRRLAMNFCLSGEILYKRNHDMVLLQCVDEEEAKQIMTDIHEGICGTHANGHMIARQILRSGYYWTTMESDCIKYAREWKKCQIYM
        REYPYEASENDK TIRRLAMNF LSGE+LYKRNHDMVLL+CVDEEEAKQIMTDI+EGICGTHANGHM+ARQILRSGYYWTTMESDCIKYARE KKCQIYM
Subjt:  REYPYEASENDKCTIRRLAMNFCLSGEILYKRNHDMVLLQCVDEEEAKQIMTDIHEGICGTHANGHMIARQILRSGYYWTTMESDCIKYAREWKKCQIYM

Query:  DKIHVAVSPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEVASYCNVTRGVVLKFIKKELICRYGLPESIITDNAKNLNNKMMDELC
        DKIHVA SPLH+LSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIE ASYCNVTRGVVLKFIKKELICRYGLPE IITDNAKNLNNKMMDELC
Subjt:  DKIHVAVSPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEVASYCNVTRGVVLKFIKKELICRYGLPESIITDNAKNLNNKMMDELC

Query:  EQFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTITYKDWHEMLLFALHRYRTSVRTSTWATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIR
        EQFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTITYKDWHEML FALH YRTSVRTST ATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIR
Subjt:  EQFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTITYKDWHEMLLFALHRYRTSVRTSTWATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIR

KAA0036943.1 uncharacterized protein E6C27_scaffold86G00190 [Cucumis melo var. makuwa]2.05e-26289.75Show/hide
Query:  MLVIHQVKEEWKTIDAKLVPYSQYVTKLSQNFEKISFNHVLREDNRMADALATLI------------------RVVPAYCMNVGNDNKPWYFDIKQYIKC
        MLVIHQVKEEW+T DAKLVPYSQYVTKLSQ FEKISF+HV REDNRMADALATL                   R VPAYCMNVGNDNKPWYFDIKQYIKC
Subjt:  MLVIHQVKEEWKTIDAKLVPYSQYVTKLSQNFEKISFNHVLREDNRMADALATLI------------------RVVPAYCMNVGNDNKPWYFDIKQYIKC

Query:  REYPYEASENDKCTIRRLAMNFCLSGEILYKRNHDMVLLQCVDEEEAKQIMTDIHEGICGTHANGHMIARQILRSGYYWTTMESDCIKYAREWKKCQIYM
        REYPYEASENDK TIRRLAMNF LSGE+LYKRNHDMVLL+CVDEEEAKQIMTDI+EGICGTHANGHM+ARQILRSGYYWTTMESDCIKYARE KKCQIYM
Subjt:  REYPYEASENDKCTIRRLAMNFCLSGEILYKRNHDMVLLQCVDEEEAKQIMTDIHEGICGTHANGHMIARQILRSGYYWTTMESDCIKYAREWKKCQIYM

Query:  DKIHVAVSPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEVASYCNVTRGVVLKFIKKELICRYGLPESIITDNAKNLNNKMMDELC
        DKIHVA S LH+LSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIE ASYCNVTRGVVLKFIKKELICRYGLPE IITDNAKNLNNKMMDELC
Subjt:  DKIHVAVSPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEVASYCNVTRGVVLKFIKKELICRYGLPESIITDNAKNLNNKMMDELC

Query:  EQFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTITYKDWHEMLLFALHRYRTSVRTSTWATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIR
        EQFKINHRNSTPYRPKMNGAVEAANKNIKRI+EKMTITYKDWHEML FALH YRTSVRTST ATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIR
Subjt:  EQFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTITYKDWHEMLLFALHRYRTSVRTSTWATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIR

KAA0055609.1 uncharacterized protein E6C27_scaffold222G00930 [Cucumis melo var. makuwa]2.07e-25086.9Show/hide
Query:  MLVIHQVKEEWKTIDAKLVPYSQYVTKLSQNFEKISFNHVLREDNRMADALATLI------------------RVVPAYCMNVGNDNKPWYFDIKQYIKC
        MLVIHQVKEEW+T DAKLVPYSQYVTKLSQNFEKI F+HV RE+N+MADALATL                   R VPAYCMNVGNDNKPWYFDIKQYIKC
Subjt:  MLVIHQVKEEWKTIDAKLVPYSQYVTKLSQNFEKISFNHVLREDNRMADALATLI------------------RVVPAYCMNVGNDNKPWYFDIKQYIKC

Query:  REYPYEASENDKCTIRRLAMNFCLSGEILYKRNHDMVLLQCVDEEEAKQIMTDIHEGICGTHANGHMIARQILRSGYYWTTMESDCIKYAREWKKCQIYM
        REYPYEASENDK  IRRL MNF LSGE+LYKRNHDMVLL+CVDEEEAKQIMTDIHEGICGTHANGHM+ARQILRSGYYWTTMESDCIKYAR+ KKCQIYM
Subjt:  REYPYEASENDKCTIRRLAMNFCLSGEILYKRNHDMVLLQCVDEEEAKQIMTDIHEGICGTHANGHMIARQILRSGYYWTTMESDCIKYAREWKKCQIYM

Query:  DKIHVAVSPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEVASYCNVTRGVVLKFIKKELICRYGLPESIITDNAKNLNNKMMDELC
        DKIHVA SPLH+ SA WPFSLWGMDVIG IDPKASNGH FILVAIDYFTKWIEVASYCNVTRGVVLKFIKKELICRYGLPE IIT+NAKNLNN+MMDEL 
Subjt:  DKIHVAVSPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEVASYCNVTRGVVLKFIKKELICRYGLPESIITDNAKNLNNKMMDELC

Query:  EQFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTITYKDWHEMLLFALHRYRTSVRTSTWATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAE
        EQFKINHRN TPYRPKMN AVEAANKNIKRIIEKMTITYKDWHEML FALH YRTSVRTSTWATPFS VYGMEVVLPLEVEIPSLRVLMEAKLDE E
Subjt:  EQFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTITYKDWHEMLLFALHRYRTSVRTSTWATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAE

KAA0066745.1 RNA-directed DNA polymerase [Cucumis melo var. makuwa]3.88e-245100Show/hide
Query:  MNVGNDNKPWYFDIKQYIKCREYPYEASENDKCTIRRLAMNFCLSGEILYKRNHDMVLLQCVDEEEAKQIMTDIHEGICGTHANGHMIARQILRSGYYWT
        MNVGNDNKPWYFDIKQYIKCREYPYEASENDKCTIRRLAMNFCLSGEILYKRNHDMVLLQCVDEEEAKQIMTDIHEGICGTHANGHMIARQILRSGYYWT
Subjt:  MNVGNDNKPWYFDIKQYIKCREYPYEASENDKCTIRRLAMNFCLSGEILYKRNHDMVLLQCVDEEEAKQIMTDIHEGICGTHANGHMIARQILRSGYYWT

Query:  TMESDCIKYAREWKKCQIYMDKIHVAVSPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEVASYCNVTRGVVLKFIKKELICRYGLP
        TMESDCIKYAREWKKCQIYMDKIHVAVSPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEVASYCNVTRGVVLKFIKKELICRYGLP
Subjt:  TMESDCIKYAREWKKCQIYMDKIHVAVSPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEVASYCNVTRGVVLKFIKKELICRYGLP

Query:  ESIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTITYKDWHEMLLFALHRYRTSVRTSTWATPFSLVYGMEVVLPLEV
        ESIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTITYKDWHEMLLFALHRYRTSVRTSTWATPFSLVYGMEVVLPLEV
Subjt:  ESIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTITYKDWHEMLLFALHRYRTSVRTSTWATPFSLVYGMEVVLPLEV

Query:  EIPSLRVLMEAKLDEAEWIRVMSS
        EIPSLRVLMEAKLDEAEWIRVMSS
Subjt:  EIPSLRVLMEAKLDEAEWIRVMSS

TYK24459.1 uncharacterized protein E5676_scaffold717G00160 [Cucumis melo var. makuwa]4.81e-24787.66Show/hide
Query:  MLVIHQVKEEWKTIDAKLVPYSQYVTKLSQNFEKISFNHVLREDNRMADALATLI------------------RVVPAYCMNVGNDNKPWYFDIKQYIKC
        MLVIHQVKEEW+T DAKLVPYSQYVTKLSQNFEKISF+HV REDNRMADALATL                   R VPAYCMNVGNDNKPWYFDIKQYIKC
Subjt:  MLVIHQVKEEWKTIDAKLVPYSQYVTKLSQNFEKISFNHVLREDNRMADALATLI------------------RVVPAYCMNVGNDNKPWYFDIKQYIKC

Query:  REYPYEASENDKCTIRRLAMNFCLSGEILYKRNHDMVLLQCVDEEEAKQIMTDIHEGICGTHANGHMIARQILRSGYYWTTMESDCIKYAREWKKCQIYM
        REYPYEASENDK  IRRL MNF LSGE+LYKRNHDMVLL+CVDEEEAKQIMTDIHEGICGTHANGHM+ARQILRSGYYWTTMESDCIKYAR+ KKCQIYM
Subjt:  REYPYEASENDKCTIRRLAMNFCLSGEILYKRNHDMVLLQCVDEEEAKQIMTDIHEGICGTHANGHMIARQILRSGYYWTTMESDCIKYAREWKKCQIYM

Query:  DKIHVAVSPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEVASYCNVTRGVVLKFIKKELICRYGLPESIITDNAKNLNNKMMDELC
        DKIHVA SPLH+ SA WPFSLWGMDVIG IDPKASNGH FILVAIDYFTKWIEVASYCNVTRGVVLKFIKKELICRYGLPE IIT+NAKNLNN+MMDEL 
Subjt:  DKIHVAVSPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEVASYCNVTRGVVLKFIKKELICRYGLPESIITDNAKNLNNKMMDELC

Query:  EQFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTITYKDWHEMLLFALHRYRTSVRTSTWATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAE
        EQFKINHRN TPYRPKMN AVEAANKNIKRIIEKMTITYKDWHEML FALH YRTSVRTSTWATPFS VYGMEVVLPLEVEIPSLRVLMEAKLDE E
Subjt:  EQFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTITYKDWHEMLLFALHRYRTSVRTSTWATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAE

TrEMBL top hitse value%identityAlignment
A0A5A7T0A1 Ribonuclease H3.4e-20990.25Show/hide
Query:  MLVIHQVKEEWKTIDAKLVPYSQYVTKLSQNFEKISFNHVLREDNRMADALATLI------------------RVVPAYCMNVGNDNKPWYFDIKQYIKC
        MLVIHQVKEEW+  DAKLVPYSQYVTKLSQNFEKISF+HV REDNRMADALATL                   R VPAYCMNVGNDNKPWYFDIKQYIKC
Subjt:  MLVIHQVKEEWKTIDAKLVPYSQYVTKLSQNFEKISFNHVLREDNRMADALATLI------------------RVVPAYCMNVGNDNKPWYFDIKQYIKC

Query:  REYPYEASENDKCTIRRLAMNFCLSGEILYKRNHDMVLLQCVDEEEAKQIMTDIHEGICGTHANGHMIARQILRSGYYWTTMESDCIKYAREWKKCQIYM
        REYPYEASENDK TIRRLAMNF LSGE+LYKRNHDMVLL+CVDEEEAKQIMTDI+EGICGTHANGHM+ARQILRSGYYWTTMESDCIKYARE KKCQIYM
Subjt:  REYPYEASENDKCTIRRLAMNFCLSGEILYKRNHDMVLLQCVDEEEAKQIMTDIHEGICGTHANGHMIARQILRSGYYWTTMESDCIKYAREWKKCQIYM

Query:  DKIHVAVSPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEVASYCNVTRGVVLKFIKKELICRYGLPESIITDNAKNLNNKMMDELC
        DKIHVA SPLH+LSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIE ASYCNVTRGVVLKFIKKELICRYGLPE IITDNAKNLNNKMMDELC
Subjt:  DKIHVAVSPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEVASYCNVTRGVVLKFIKKELICRYGLPESIITDNAKNLNNKMMDELC

Query:  EQFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTITYKDWHEMLLFALHRYRTSVRTSTWATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIR
        EQFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTITYKDWHEML FALH YRTSVRTST ATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIR
Subjt:  EQFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTITYKDWHEMLLFALHRYRTSVRTSTWATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIR

A0A5A7T1X2 Ribonuclease H4.9e-20889.75Show/hide
Query:  MLVIHQVKEEWKTIDAKLVPYSQYVTKLSQNFEKISFNHVLREDNRMADALATLI------------------RVVPAYCMNVGNDNKPWYFDIKQYIKC
        MLVIHQVKEEW+T DAKLVPYSQYVTKLSQ FEKISF+HV REDNRMADALATL                   R VPAYCMNVGNDNKPWYFDIKQYIKC
Subjt:  MLVIHQVKEEWKTIDAKLVPYSQYVTKLSQNFEKISFNHVLREDNRMADALATLI------------------RVVPAYCMNVGNDNKPWYFDIKQYIKC

Query:  REYPYEASENDKCTIRRLAMNFCLSGEILYKRNHDMVLLQCVDEEEAKQIMTDIHEGICGTHANGHMIARQILRSGYYWTTMESDCIKYAREWKKCQIYM
        REYPYEASENDK TIRRLAMNF LSGE+LYKRNHDMVLL+CVDEEEAKQIMTDI+EGICGTHANGHM+ARQILRSGYYWTTMESDCIKYARE KKCQIYM
Subjt:  REYPYEASENDKCTIRRLAMNFCLSGEILYKRNHDMVLLQCVDEEEAKQIMTDIHEGICGTHANGHMIARQILRSGYYWTTMESDCIKYAREWKKCQIYM

Query:  DKIHVAVSPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEVASYCNVTRGVVLKFIKKELICRYGLPESIITDNAKNLNNKMMDELC
        DKIHVA S LH+LSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIE ASYCNVTRGVVLKFIKKELICRYGLPE IITDNAKNLNNKMMDELC
Subjt:  DKIHVAVSPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEVASYCNVTRGVVLKFIKKELICRYGLPESIITDNAKNLNNKMMDELC

Query:  EQFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTITYKDWHEMLLFALHRYRTSVRTSTWATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIR
        EQFKINHRNSTPYRPKMNGAVEAANKNIKRI+EKMTITYKDWHEML FALH YRTSVRTST ATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIR
Subjt:  EQFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTITYKDWHEMLLFALHRYRTSVRTSTWATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIR

A0A5A7T7R4 Ribonuclease H1.7e-20588.75Show/hide
Query:  MLVIHQVKEEWKTIDAKLVPYSQYVTKLSQNFEKISFNHVLREDNRMADALATLI------------------RVVPAYCMNVGNDNKPWYFDIKQYIKC
        MLVIHQVKEEW+T  AKLVPYSQYVTKLSQNFEKISF+HV REDNRMADALATL                   R VPAYCMNVGNDNKPWYFDIKQYIKC
Subjt:  MLVIHQVKEEWKTIDAKLVPYSQYVTKLSQNFEKISFNHVLREDNRMADALATLI------------------RVVPAYCMNVGNDNKPWYFDIKQYIKC

Query:  REYPYEASENDKCTIRRLAMNFCLSGEILYKRNHDMVLLQCVDEEEAKQIMTDIHEGICGTHANGHMIARQILRSGYYWTTMESDCIKYAREWKKCQIYM
        REYPYEASENDK TIRRLAMNF LSGE+LYKRNHDMVLL+CVDEEEAKQIM DIHEGIC THANGHM+ARQILRS YYWTTMESDCIKY RE KKCQIYM
Subjt:  REYPYEASENDKCTIRRLAMNFCLSGEILYKRNHDMVLLQCVDEEEAKQIMTDIHEGICGTHANGHMIARQILRSGYYWTTMESDCIKYAREWKKCQIYM

Query:  DKIHVAVSPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEVASYCNVTRGVVLKFIKKELICRYGLPESIITDNAKNLNNKMMDELC
        DKIHVA SPLH+LSAPWPFSLWGMDVIGPIDPKASNGHRF LV+IDYFTKWIEVAS+CNVTRGVVLKFIKKELICRYGLPE IITDNAKNLNNKMMDELC
Subjt:  DKIHVAVSPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEVASYCNVTRGVVLKFIKKELICRYGLPESIITDNAKNLNNKMMDELC

Query:  EQFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTITYKDWHEMLLFALHRYRTSVRTSTWATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIR
        EQFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTITYKDWHEML FALH YRTSVRTST ATPFSLVYGME VLPLEVEIPSLRVLMEAKLDEAEWIR
Subjt:  EQFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTITYKDWHEMLLFALHRYRTSVRTSTWATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIR

A0A5A7UQ60 Ribonuclease H9.2e-19986.9Show/hide
Query:  MLVIHQVKEEWKTIDAKLVPYSQYVTKLSQNFEKISFNHVLREDNRMADALATLI------------------RVVPAYCMNVGNDNKPWYFDIKQYIKC
        MLVIHQVKEEW+T DAKLVPYSQYVTKLSQNFEKI F+HV RE+N+MADALATL                   R VPAYCMNVGNDNKPWYFDIKQYIKC
Subjt:  MLVIHQVKEEWKTIDAKLVPYSQYVTKLSQNFEKISFNHVLREDNRMADALATLI------------------RVVPAYCMNVGNDNKPWYFDIKQYIKC

Query:  REYPYEASENDKCTIRRLAMNFCLSGEILYKRNHDMVLLQCVDEEEAKQIMTDIHEGICGTHANGHMIARQILRSGYYWTTMESDCIKYAREWKKCQIYM
        REYPYEASENDK  IRRL MNF LSGE+LYKRNHDMVLL+CVDEEEAKQIMTDIHEGICGTHANGHM+ARQILRSGYYWTTMESDCIKYAR+ KKCQIYM
Subjt:  REYPYEASENDKCTIRRLAMNFCLSGEILYKRNHDMVLLQCVDEEEAKQIMTDIHEGICGTHANGHMIARQILRSGYYWTTMESDCIKYAREWKKCQIYM

Query:  DKIHVAVSPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEVASYCNVTRGVVLKFIKKELICRYGLPESIITDNAKNLNNKMMDELC
        DKIHVA SPLH+ SA WPFSLWGMDVIG IDPKASNGH FILVAIDYFTKWIEVASYCNVTRGVVLKFIKKELICRYGLPE IIT+NAKNLNN+MMDEL 
Subjt:  DKIHVAVSPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEVASYCNVTRGVVLKFIKKELICRYGLPESIITDNAKNLNNKMMDELC

Query:  EQFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTITYKDWHEMLLFALHRYRTSVRTSTWATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAE
        EQFKINHRN TPYRPKMN AVEAANKNIKRIIEKMTITYKDWHEML FALH YRTSVRTSTWATPFS VYGMEVVLPLEVEIPSLRVLMEAKLDE E
Subjt:  EQFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTITYKDWHEMLLFALHRYRTSVRTSTWATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAE

A0A5D3DMD2 Ribonuclease H1.7e-20087.66Show/hide
Query:  MLVIHQVKEEWKTIDAKLVPYSQYVTKLSQNFEKISFNHVLREDNRMADALATLI------------------RVVPAYCMNVGNDNKPWYFDIKQYIKC
        MLVIHQVKEEW+T DAKLVPYSQYVTKLSQNFEKISF+HV REDNRMADALATL                   R VPAYCMNVGNDNKPWYFDIKQYIKC
Subjt:  MLVIHQVKEEWKTIDAKLVPYSQYVTKLSQNFEKISFNHVLREDNRMADALATLI------------------RVVPAYCMNVGNDNKPWYFDIKQYIKC

Query:  REYPYEASENDKCTIRRLAMNFCLSGEILYKRNHDMVLLQCVDEEEAKQIMTDIHEGICGTHANGHMIARQILRSGYYWTTMESDCIKYAREWKKCQIYM
        REYPYEASENDK  IRRL MNF LSGE+LYKRNHDMVLL+CVDEEEAKQIMTDIHEGICGTHANGHM+ARQILRSGYYWTTMESDCIKYAR+ KKCQIYM
Subjt:  REYPYEASENDKCTIRRLAMNFCLSGEILYKRNHDMVLLQCVDEEEAKQIMTDIHEGICGTHANGHMIARQILRSGYYWTTMESDCIKYAREWKKCQIYM

Query:  DKIHVAVSPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEVASYCNVTRGVVLKFIKKELICRYGLPESIITDNAKNLNNKMMDELC
        DKIHVA SPLH+ SA WPFSLWGMDVIG IDPKASNGH FILVAIDYFTKWIEVASYCNVTRGVVLKFIKKELICRYGLPE IIT+NAKNLNN+MMDEL 
Subjt:  DKIHVAVSPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEVASYCNVTRGVVLKFIKKELICRYGLPESIITDNAKNLNNKMMDELC

Query:  EQFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTITYKDWHEMLLFALHRYRTSVRTSTWATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAE
        EQFKINHRN TPYRPKMN AVEAANKNIKRIIEKMTITYKDWHEML FALH YRTSVRTSTWATPFS VYGMEVVLPLEVEIPSLRVLMEAKLDE E
Subjt:  EQFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTITYKDWHEMLLFALHRYRTSVRTSTWATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAE

SwissProt top hitse value%identityAlignment
P03360 Gag-Pol polyprotein (Fragment)3.2e-1532.48Show/hide
Query:  PFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEVASYCNVTRGVVLKFIKKELICRYGLPESIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKM
        P   W +D    I   A  G++++LV +D F+ W+E       T  VV+K +  ++I R+GLP  I +DN      K+  +LCE   ++ +    YRP+ 
Subjt:  PFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEVASYCNVTRGVVLKFIKKELICRYGLPESIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKM

Query:  NGAVEAANKNIKRIIEKMTI-TYKDWHEMLLFALHRYRTSVRTSTWATPFSLVYGME
        +G VE  N+ +K  I K+ I T  DW  +L  AL R R +       +PF ++YG++
Subjt:  NGAVEAANKNIKRIIEKMTI-TYKDWHEMLLFALHRYRTSVRTSTWATPFSLVYGME

P10272 Gag-Pol polyprotein1.8e-1332.85Show/hide
Query:  GHRFILVAIDYFTKWIEVASYCNVTRGVVLKFIKKELICRYGLPESIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMT
        G++++LV +D F+ W+E       T  +V K I +E+  R+GLP+ I +DN     +++   L     IN +    YRP+ +G VE  N+ IK  + K+T
Subjt:  GHRFILVAIDYFTKWIEVASYCNVTRGVVLKFIKKELICRYGLPESIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMT

Query:  IT--YKDWHEMLLFALHRYRTSVRTSTWATPFSLVYG
        +    KDW  +L  AL R R +       TP+ ++YG
Subjt:  IT--YKDWHEMLLFALHRYRTSVRTSTWATPFSLVYG

P10273 Gag-Pol polyprotein6.0e-1427.47Show/hide
Query:  EEEAKQIMTDIHEGICGTHANGHMIARQILR--SGYYWTTMESDCIKYAREWKKC-QIYMDKIHVAVSPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRF
        E+ AK++++ +H+    TH +   +   + R  +G+Y    +    +     + C QI   KI     P        P + W +D    I P    G+++
Subjt:  EEEAKQIMTDIHEGICGTHANGHMIARQILR--SGYYWTTMESDCIKYAREWKKC-QIYMDKIHVAVSPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRF

Query:  ILVAIDYFTKWIEVASYCNVTRGVVLKFIKKELICRYGLPESIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTIT--
        +LV ID F+ W E     + T  VV K + +E+  RYG+P+ + +DN     +++   +     IN +    YRP+ +G VE  N++IK  + K+T+   
Subjt:  ILVAIDYFTKWIEVASYCNVTRGVVLKFIKKELICRYGLPESIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTIT--

Query:  YKDWHEMLLFALHRYRTSVRTSTWATPFSLVYG
         KDW  +L   L+R R +       TPF ++YG
Subjt:  YKDWHEMLLFALHRYRTSVRTSTWATPFSLVYG

P31792 Pol polyprotein (Fragment)1.8e-1332.85Show/hide
Query:  GHRFILVAIDYFTKWIEVASYCNVTRGVVLKFIKKELICRYGLPESIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMT
        G++++LV +D F+ W+E       T  +V K I +E+  R+GLP+ I +DN     +++   L     IN +    YRP+ +G VE  N+ IK  + K+T
Subjt:  GHRFILVAIDYFTKWIEVASYCNVTRGVVLKFIKKELICRYGLPESIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMT

Query:  IT--YKDWHEMLLFALHRYRTSVRTSTWATPFSLVYG
        +    KDW  +L  AL R R +       TP+ ++YG
Subjt:  IT--YKDWHEMLLFALHRYRTSVRTSTWATPFSLVYG

Q09575 Uncharacterized protein K02A2.63.2e-1527.49Show/hide
Query:  KQIMTDIHEGICGTHANGHMIARQILRSGYYWTTMESDCIKYAREWKKCQ--IYMDKIHVAVSPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAI
        K ++  +HEG       G +  +Q  RS  +W  ++SD     R    CQ    M ++ V ++P  V  APW      +D  GP+     NG  ++LV +
Subjt:  KQIMTDIHEGICGTHANGHMIARQILRSGYYWTTMESDCIKYAREWKKCQ--IYMDKIHVAVSPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAI

Query:  DYFTKWIEVASYCNVTRGVVLKFIKKELICRYGLPESIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTITYKDWHEM
        D  TK+ EV    +++    +  + +E+   +G PE+II+DN   L + +  ++C+   I H+ S  Y P+ NGA E     +KR I K+        ++
Subjt:  DYFTKWIEVASYCNVTRGVVLKFIKKELICRYGLPESIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTITYKDWHEM

Query:  LLFALHRYRTSVRTS-TWATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDE
        L   L  YR +  ++   +TP    +G ++   + + +P+ RVL   KL +
Subjt:  LLFALHRYRTSVRTS-TWATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDE

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGTGATACATCAAGTCAAGGAAGAATGGAAAACAATAGATGCTAAATTGGTACCTTATAGCCAATACGTTACAAAATTGTCTCAAAATTTTGAGAAGATTTCATT
TAACCATGTTCTTAGGGAAGACAATCGAATGGCAGATGCATTAGCCACTCTGATACGAGTTGTGCCAGCATATTGCATGAATGTTGGAAATGATAACAAGCCATGGTATT
TTGACATTAAGCAATACATAAAGTGTAGAGAATATCCATATGAAGCTTCAGAGAATGACAAATGCACAATAAGGAGGTTGGCCATGAACTTTTGCTTAAGTGGTGAAATT
CTTTATAAAAGAAACCACGATATGGTGCTCCTTCAGTGTGTTGATGAGGAGGAAGCAAAACAAATTATGACAGACATTCATGAAGGAATATGTGGAACACATGCTAATGG
ACATATGATAGCTAGACAAATACTTAGATCTGGTTATTATTGGACAACGATGGAATCAGACTGCATAAAATATGCAAGGGAATGGAAAAAGTGTCAAATTTATATGGATA
AGATCCATGTAGCAGTGTCTCCATTGCATGTCTTGTCAGCACCATGGCCATTTTCTTTATGGGGAATGGATGTTATTGGACCCATTGATCCTAAAGCCTCAAATGGCCAT
CGTTTTATTCTTGTGGCCATTGATTACTTTACTAAATGGATAGAGGTTGCATCTTATTGCAATGTTACAAGGGGAGTAGTGCTTAAGTTTATCAAGAAAGAGCTTATATG
TCGTTATGGTCTCCCAGAGAGTATTATTACGGATAATGCCAAGAACCTTAATAACAAAATGATGGATGAACTTTGTGAGCAGTTCAAGATCAATCACCGAAATTCGACTC
CATATCGTCCAAAGATGAATGGGGCAGTTGAGGCAGCTAACAAAAATATTAAAAGAATCATTGAGAAAATGACAATAACATACAAAGATTGGCATGAAATGCTACTGTTT
GCACTACATCGATATCGCACATCAGTTCGTACTTCAACATGGGCAACACCATTTTCTTTAGTTTATGGTATGGAAGTTGTTTTACCTTTAGAAGTTGAGATACCTTCATT
GAGAGTTCTCATGGAAGCTAAGTTAGATGAAGCTGAATGGATACGCGTTATGAGCAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTAGTGATACATCAAGTCAAGGAAGAATGGAAAACAATAGATGCTAAATTGGTACCTTATAGCCAATACGTTACAAAATTGTCTCAAAATTTTGAGAAGATTTCATT
TAACCATGTTCTTAGGGAAGACAATCGAATGGCAGATGCATTAGCCACTCTGATACGAGTTGTGCCAGCATATTGCATGAATGTTGGAAATGATAACAAGCCATGGTATT
TTGACATTAAGCAATACATAAAGTGTAGAGAATATCCATATGAAGCTTCAGAGAATGACAAATGCACAATAAGGAGGTTGGCCATGAACTTTTGCTTAAGTGGTGAAATT
CTTTATAAAAGAAACCACGATATGGTGCTCCTTCAGTGTGTTGATGAGGAGGAAGCAAAACAAATTATGACAGACATTCATGAAGGAATATGTGGAACACATGCTAATGG
ACATATGATAGCTAGACAAATACTTAGATCTGGTTATTATTGGACAACGATGGAATCAGACTGCATAAAATATGCAAGGGAATGGAAAAAGTGTCAAATTTATATGGATA
AGATCCATGTAGCAGTGTCTCCATTGCATGTCTTGTCAGCACCATGGCCATTTTCTTTATGGGGAATGGATGTTATTGGACCCATTGATCCTAAAGCCTCAAATGGCCAT
CGTTTTATTCTTGTGGCCATTGATTACTTTACTAAATGGATAGAGGTTGCATCTTATTGCAATGTTACAAGGGGAGTAGTGCTTAAGTTTATCAAGAAAGAGCTTATATG
TCGTTATGGTCTCCCAGAGAGTATTATTACGGATAATGCCAAGAACCTTAATAACAAAATGATGGATGAACTTTGTGAGCAGTTCAAGATCAATCACCGAAATTCGACTC
CATATCGTCCAAAGATGAATGGGGCAGTTGAGGCAGCTAACAAAAATATTAAAAGAATCATTGAGAAAATGACAATAACATACAAAGATTGGCATGAAATGCTACTGTTT
GCACTACATCGATATCGCACATCAGTTCGTACTTCAACATGGGCAACACCATTTTCTTTAGTTTATGGTATGGAAGTTGTTTTACCTTTAGAAGTTGAGATACCTTCATT
GAGAGTTCTCATGGAAGCTAAGTTAGATGAAGCTGAATGGATACGCGTTATGAGCAGTTGA
Protein sequenceShow/hide protein sequence
MLVIHQVKEEWKTIDAKLVPYSQYVTKLSQNFEKISFNHVLREDNRMADALATLIRVVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEASENDKCTIRRLAMNFCLSGEI
LYKRNHDMVLLQCVDEEEAKQIMTDIHEGICGTHANGHMIARQILRSGYYWTTMESDCIKYAREWKKCQIYMDKIHVAVSPLHVLSAPWPFSLWGMDVIGPIDPKASNGH
RFILVAIDYFTKWIEVASYCNVTRGVVLKFIKKELICRYGLPESIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTITYKDWHEMLLF
ALHRYRTSVRTSTWATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRVMSS