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IVF0008543 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0008543
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposable element Tf2
Genome locationchr04:17161686..17162386
RNA-Seq ExpressionIVF0008543
SyntenyIVF0008543
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032918.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]5.94e-10878.97Show/hide
Query:  MEPPLGWQRPPNQRQSPQSNQNNSPQRPPQTIASSSETIPSKGKPSTQSSAPSPMSAENYTMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPQY-----LQ
        MEPP   QRPPN+RQ P +NQNNS  +PPQ++ASSS T PS+ +  +QSSAPSPMSAENY MDLQFEQVSRRRQG A+RTLTIQSDSSSLP       L+
Subjt:  MEPPLGWQRPPNQRQSPQSNQNNSPQRPPQTIASSSETIPSKGKPSTQSSAPSPMSAENYTMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPQY-----LQ

Query:  PHCC-----RAASPTASSSSSAIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVYEVYNQIFPHEFNFLPEDLAKTRTFYKYILVD
        P        RAASP ASSS SAIPRNPSSYSQIVRPK+FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EV +QIFPH FNFLPEDL+KTRTFY+YILVD
Subjt:  PHCC-----RAASPTASSSSSAIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVYEVYNQIFPHEFNFLPEDLAKTRTFYKYILVD

Query:  SKSAEITHVPDKNDPSKIIYSKLRIFRVLTQSY
        SKSAEITHVPDKNDPSKIIYSKLRIFRVLT SY
Subjt:  SKSAEITHVPDKNDPSKIIYSKLRIFRVLTQSY

KAA0050443.1 polyprotein [Cucumis melo var. makuwa]8.79e-11885.41Show/hide
Query:  MEPPLGWQRPPNQRQSPQSNQNNSPQRPPQTIASSSETIPSKGKPSTQSSAPSPMSAENYTMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPQY-----LQ
        MEPP G Q P NQRQSPQSNQNNSPQRPPQTI SSSET PSKGKPSTQSSAPS MSAENY MDLQFEQVSRR QG AQRTLTIQSDSSSLP       L+
Subjt:  MEPPLGWQRPPNQRQSPQSNQNNSPQRPPQTIASSSETIPSKGKPSTQSSAPSPMSAENYTMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPQY-----LQ

Query:  PHCC-----RAASPTASSSSSAIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVYEVYNQIFPHEFNFLPEDLAKTRTFYKYILVD
        P        RAASPTASSS SAIPRNPSSYSQIVRPKVFQPRP INGYFTKTTMVDLTIEPEFDGPSV+EV NQIFPHEFNFLPEDL KT TFY+YILVD
Subjt:  PHCC-----RAASPTASSSSSAIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVYEVYNQIFPHEFNFLPEDLAKTRTFYKYILVD

Query:  SKSAEITHVPDKNDPSKIIYSKLRIFRVLTQSY
        SKSAEITHVPDKNDPSKIIYSKLRIFRVLT SY
Subjt:  SKSAEITHVPDKNDPSKIIYSKLRIFRVLTQSY

KAA0050447.1 polyprotein [Cucumis melo var. makuwa]2.18e-11482.4Show/hide
Query:  MEPPLGWQRPPNQRQSPQSNQNNSPQRPPQTIASSSETIPSKGKPSTQSSAPSPMSAENYTMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPQYLQPHCC-
        MEPP G QR PNQRQSPQSNQNNSPQRP QT+ASSSET PS+GKPS QSSA SPMSAENY MDLQFEQVSRRRQG AQRTLTIQSDSSSLP         
Subjt:  MEPPLGWQRPPNQRQSPQSNQNNSPQRPPQTIASSSETIPSKGKPSTQSSAPSPMSAENYTMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPQYLQPHCC-

Query:  ---------RAASPTASSSSSAIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVYEVYNQIFPHEFNFLPEDLAKTRTFYKYILVD
                 R ASP ASSS SAI RNPSSYSQIVR KVFQPRPPINGYFTKTTMVDLTIEPEFDGP V+EV NQIFPHEFNFLPEDL+KTRTFY+YILVD
Subjt:  ---------RAASPTASSSSSAIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVYEVYNQIFPHEFNFLPEDLAKTRTFYKYILVD

Query:  SKSAEITHVPDKNDPSKIIYSKLRIFRVLTQSY
        SKSAEITHVPDKNDPSKIIYSK RIFRVLT SY
Subjt:  SKSAEITHVPDKNDPSKIIYSKLRIFRVLTQSY

TYK17808.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.69e-10778.11Show/hide
Query:  MEPPLGWQRPPNQRQSPQSNQNNSPQRPPQTIASSSETIPSKGKPSTQSSAPSPMSAENYTMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPQYLQPHCC-
        MEPP G QRP NQRQ  Q++QN++PQRPPQ++A+SS T PS+ K   QSSAPSPMSAENY MDLQFEQVSRRRQG AQRTLTIQSDSSSLP   +     
Subjt:  MEPPLGWQRPPNQRQSPQSNQNNSPQRPPQTIASSSETIPSKGKPSTQSSAPSPMSAENYTMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPQYLQPHCC-

Query:  ---------RAASPTASSSSSAIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVYEVYNQIFPHEFNFLPEDLAKTRTFYKYILVD
                 RAASP ASSS SAIPRNPSSYSQIVRP +FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EV NQIFPH FNFLPEDL+KTRTFY+YILVD
Subjt:  ---------RAASPTASSSSSAIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVYEVYNQIFPHEFNFLPEDLAKTRTFYKYILVD

Query:  SKSAEITHVPDKNDPSKIIYSKLRIFRVLTQSY
        SKSA+ITHVPDK DPSKIIYSKLRIFRVLT SY
Subjt:  SKSAEITHVPDKNDPSKIIYSKLRIFRVLTQSY

TYK28082.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]2.09e-10878.97Show/hide
Query:  MEPPLGWQRPPNQRQSPQSNQNNSPQRPPQTIASSSETIPSKGKPSTQSSAPSPMSAENYTMDLQFEQVSRRRQGFAQRTLTIQSDSSSLP-----QYLQ
        MEPP   QRPPN+RQ P +NQNNS  +PPQ++ASSS T PS+ +  +QSSAPSPMSAENY MDLQFEQVSRRRQG A+RTLTIQSDSSSLP     + L+
Subjt:  MEPPLGWQRPPNQRQSPQSNQNNSPQRPPQTIASSSETIPSKGKPSTQSSAPSPMSAENYTMDLQFEQVSRRRQGFAQRTLTIQSDSSSLP-----QYLQ

Query:  PHCC-----RAASPTASSSSSAIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVYEVYNQIFPHEFNFLPEDLAKTRTFYKYILVD
        P        RAASP ASSS SAIPRNPSSYSQIVRPK+FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EV +QIFPH FNFLPEDL+KTRTFY+YILVD
Subjt:  PHCC-----RAASPTASSSSSAIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVYEVYNQIFPHEFNFLPEDLAKTRTFYKYILVD

Query:  SKSAEITHVPDKNDPSKIIYSKLRIFRVLTQSY
        SKSAEITHVPDKNDPSKIIYSKLRIFRVLT SY
Subjt:  SKSAEITHVPDKNDPSKIIYSKLRIFRVLTQSY

TrEMBL top hitse value%identityAlignment
A0A5A7SQU5 Retrotransposable element Tf21.1e-8778.97Show/hide
Query:  MEPPLGWQRPPNQRQSPQSNQNNSPQRPPQTIASSSETIPSKGKPSTQSSAPSPMSAENYTMDLQFEQVSRRRQGFAQRTLTIQSDSSSLP-----QYLQ
        MEPP   QRPPN+RQ P +NQNNS  +PPQ++ASSS T PS+ +  +QSSAPSPMSAENY MDLQFEQVSRRRQG A+RTLTIQSDSSSLP       L+
Subjt:  MEPPLGWQRPPNQRQSPQSNQNNSPQRPPQTIASSSETIPSKGKPSTQSSAPSPMSAENYTMDLQFEQVSRRRQGFAQRTLTIQSDSSSLP-----QYLQ

Query:  PH-----CCRAASPTASSSSSAIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVYEVYNQIFPHEFNFLPEDLAKTRTFYKYILVD
        P        RAASP ASSS SAIPRNPSSYSQIVRPK+FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EV +QIFPH FNFLPEDL+KTRTFY+YILVD
Subjt:  PH-----CCRAASPTASSSSSAIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVYEVYNQIFPHEFNFLPEDLAKTRTFYKYILVD

Query:  SKSAEITHVPDKNDPSKIIYSKLRIFRVLTQSY
        SKSAEITHVPDKNDPSKIIYSKLRIFRVLT SY
Subjt:  SKSAEITHVPDKNDPSKIIYSKLRIFRVLTQSY

A0A5A7U3G5 Polyprotein3.2e-9585.41Show/hide
Query:  MEPPLGWQRPPNQRQSPQSNQNNSPQRPPQTIASSSETIPSKGKPSTQSSAPSPMSAENYTMDLQFEQVSRRRQGFAQRTLTIQSDSSSLP-----QYLQ
        MEPP G Q P NQRQSPQSNQNNSPQRPPQTI SSSET PSKGKPSTQSSAPS MSAENY MDLQFEQVSRR QG AQRTLTIQSDSSSLP       L+
Subjt:  MEPPLGWQRPPNQRQSPQSNQNNSPQRPPQTIASSSETIPSKGKPSTQSSAPSPMSAENYTMDLQFEQVSRRRQGFAQRTLTIQSDSSSLP-----QYLQ

Query:  PH-----CCRAASPTASSSSSAIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVYEVYNQIFPHEFNFLPEDLAKTRTFYKYILVD
        P        RAASPTASSS SAIPRNPSSYSQIVRPKVFQPRP INGYFTKTTMVDLTIEPEFDGPSV+EV NQIFPHEFNFLPEDL KT TFY+YILVD
Subjt:  PH-----CCRAASPTASSSSSAIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVYEVYNQIFPHEFNFLPEDLAKTRTFYKYILVD

Query:  SKSAEITHVPDKNDPSKIIYSKLRIFRVLTQSY
        SKSAEITHVPDKNDPSKIIYSKLRIFRVLT SY
Subjt:  SKSAEITHVPDKNDPSKIIYSKLRIFRVLTQSY

A0A5A7U7T9 Polyprotein1.3e-9182.4Show/hide
Query:  MEPPLGWQRPPNQRQSPQSNQNNSPQRPPQTIASSSETIPSKGKPSTQSSAPSPMSAENYTMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPQYLQPHCC-
        MEPP G QR PNQRQSPQSNQNNSPQR PQT+ASSSET PS+GKPS QSSA SPMSAENY MDLQFEQVSRRRQG AQRTLTIQSDSSSLP         
Subjt:  MEPPLGWQRPPNQRQSPQSNQNNSPQRPPQTIASSSETIPSKGKPSTQSSAPSPMSAENYTMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPQYLQPHCC-

Query:  ---------RAASPTASSSSSAIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVYEVYNQIFPHEFNFLPEDLAKTRTFYKYILVD
                 R ASP ASSS SAI RNPSSYSQIVR KVFQPRPPINGYFTKTTMVDLTIEPEFDGP V+EV NQIFPHEFNFLPEDL+KTRTFY+YILVD
Subjt:  ---------RAASPTASSSSSAIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVYEVYNQIFPHEFNFLPEDLAKTRTFYKYILVD

Query:  SKSAEITHVPDKNDPSKIIYSKLRIFRVLTQSY
        SKSAEITHVPDKNDPSKIIYSK RIFRVLT SY
Subjt:  SKSAEITHVPDKNDPSKIIYSKLRIFRVLTQSY

A0A5D3D2Q6 Retrotransposable element Tf22.5e-8778.11Show/hide
Query:  MEPPLGWQRPPNQRQSPQSNQNNSPQRPPQTIASSSETIPSKGKPSTQSSAPSPMSAENYTMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPQYLQPHCC-
        MEPP G QRP NQRQ  Q++QN++PQRPPQ++A+SS T PS+ K   QSSAPSPMSAENY MDLQFEQVSRRRQG AQRTLTIQSDSSSLP   +     
Subjt:  MEPPLGWQRPPNQRQSPQSNQNNSPQRPPQTIASSSETIPSKGKPSTQSSAPSPMSAENYTMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPQYLQPHCC-

Query:  ---------RAASPTASSSSSAIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVYEVYNQIFPHEFNFLPEDLAKTRTFYKYILVD
                 RAASP ASSS SAIPRNPSSYSQIVRP +FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EV NQIFPH FNFLPEDL+KTRTFY+YILVD
Subjt:  ---------RAASPTASSSSSAIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVYEVYNQIFPHEFNFLPEDLAKTRTFYKYILVD

Query:  SKSAEITHVPDKNDPSKIIYSKLRIFRVLTQSY
        SKSA+ITHVPDK DPSKIIYSKLRIFRVLT SY
Subjt:  SKSAEITHVPDKNDPSKIIYSKLRIFRVLTQSY

A0A5D3DX32 Retrotransposable element Tf25.0e-8878.97Show/hide
Query:  MEPPLGWQRPPNQRQSPQSNQNNSPQRPPQTIASSSETIPSKGKPSTQSSAPSPMSAENYTMDLQFEQVSRRRQGFAQRTLTIQSDSSSLP-----QYLQ
        MEPP   QRPPN+RQ P +NQNNS  +PPQ++ASSS T PS+ +  +QSSAPSPMSAENY MDLQFEQVSRRRQG A+RTLTIQSDSSSLP     + L+
Subjt:  MEPPLGWQRPPNQRQSPQSNQNNSPQRPPQTIASSSETIPSKGKPSTQSSAPSPMSAENYTMDLQFEQVSRRRQGFAQRTLTIQSDSSSLP-----QYLQ

Query:  PH-----CCRAASPTASSSSSAIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVYEVYNQIFPHEFNFLPEDLAKTRTFYKYILVD
        P        RAASP ASSS SAIPRNPSSYSQIVRPK+FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EV +QIFPH FNFLPEDL+KTRTFY+YILVD
Subjt:  PH-----CCRAASPTASSSSSAIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVYEVYNQIFPHEFNFLPEDLAKTRTFYKYILVD

Query:  SKSAEITHVPDKNDPSKIIYSKLRIFRVLTQSY
        SKSAEITHVPDKNDPSKIIYSKLRIFRVLT SY
Subjt:  SKSAEITHVPDKNDPSKIIYSKLRIFRVLTQSY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACCGCCTCTTGGCTGGCAACGGCCACCAAATCAGCGGCAATCGCCGCAAAGCAATCAAAATAATAGTCCACAGAGACCTCCTCAAACAATAGCTTCCTCCTCAGA
AACAATACCTTCCAAGGGAAAACCCTCAACTCAATCATCTGCACCGTCACCTATGAGTGCAGAAAATTACACCATGGATTTACAATTTGAACAAGTATCCAGGCGACGTC
AAGGTTTTGCTCAAAGAACATTGACTATTCAATCAGACTCTTCGAGTCTTCCCCAATACCTTCAACCGCATTGCTGCCGTGCTGCTTCCCCGACCGCTTCTTCCTCAAGC
TCTGCAATTCCGAGGAATCCTTCCTCGTATTCTCAAATCGTTAGGCCAAAAGTATTCCAGCCTAGACCTCCAATTAATGGTTATTTCACCAAAACCACGATGGTTGATTT
AACCATAGAACCAGAATTCGATGGACCCTCCGTCTACGAAGTCTATAATCAAATATTTCCTCACGAGTTTAACTTCTTACCGGAGGATCTTGCAAAGACTAGGACCTTCT
ACAAGTACATTTTAGTTGACTCAAAATCAGCTGAAATTACTCACGTCCCAGACAAAAATGATCCCTCTAAGATCATTTATTCAAAGTTGAGGATTTTTCGTGTTCTCACT
CAATCTTACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAACCGCCTCTTGGCTGGCAACGGCCACCAAATCAGCGGCAATCGCCGCAAAGCAATCAAAATAATAGTCCACAGAGACCTCCTCAAACAATAGCTTCCTCCTCAGA
AACAATACCTTCCAAGGGAAAACCCTCAACTCAATCATCTGCACCGTCACCTATGAGTGCAGAAAATTACACCATGGATTTACAATTTGAACAAGTATCCAGGCGACGTC
AAGGTTTTGCTCAAAGAACATTGACTATTCAATCAGACTCTTCGAGTCTTCCCCAATACCTTCAACCGCATTGCTGCCGTGCTGCTTCCCCGACCGCTTCTTCCTCAAGC
TCTGCAATTCCGAGGAATCCTTCCTCGTATTCTCAAATCGTTAGGCCAAAAGTATTCCAGCCTAGACCTCCAATTAATGGTTATTTCACCAAAACCACGATGGTTGATTT
AACCATAGAACCAGAATTCGATGGACCCTCCGTCTACGAAGTCTATAATCAAATATTTCCTCACGAGTTTAACTTCTTACCGGAGGATCTTGCAAAGACTAGGACCTTCT
ACAAGTACATTTTAGTTGACTCAAAATCAGCTGAAATTACTCACGTCCCAGACAAAAATGATCCCTCTAAGATCATTTATTCAAAGTTGAGGATTTTTCGTGTTCTCACT
CAATCTTACTAG
Protein sequenceShow/hide protein sequence
MEPPLGWQRPPNQRQSPQSNQNNSPQRPPQTIASSSETIPSKGKPSTQSSAPSPMSAENYTMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPQYLQPHCCRAASPTASSSS
SAIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVYEVYNQIFPHEFNFLPEDLAKTRTFYKYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLT
QSY