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IVF0008546 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0008546
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTrihelix transcription factor GTL1 isoform X2
Genome locationchr09:23089262..23089660
RNA-Seq ExpressionIVF0008546
SyntenyIVF0008546
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042619.1 trihelix transcription factor GTL1 isoform X2 [Cucumis melo var. makuwa]1.47e-88100Show/hide
Query:  MEPPAPGSGSGLPDPSQLFRVVSTPPPPPSLTVDTTISDSQQVEAASPISSRPPAVPSSYEELIRLGGGGGAGHMVVDDDEADGRSGGGSGGSGGNRWPR
        MEPPAPGSGSGLPDPSQLFRVVSTPPPPPSLTVDTTISDSQQVEAASPISSRPPAVPSSYEELIRLGGGGGAGHMVVDDDEADGRSGGGSGGSGGNRWPR
Subjt:  MEPPAPGSGSGLPDPSQLFRVVSTPPPPPSLTVDTTISDSQQVEAASPISSRPPAVPSSYEELIRLGGGGGAGHMVVDDDEADGRSGGGSGGSGGNRWPR

Query:  QETLALLKIRSEMDSVFRDATLKGPLWDEVSR
        QETLALLKIRSEMDSVFRDATLKGPLWDEVSR
Subjt:  QETLALLKIRSEMDSVFRDATLKGPLWDEVSR

XP_011654662.1 trihelix transcription factor GTL1 isoform X1 [Cucumis sativus]7.17e-7896.97Show/hide
Query:  MEPPAPGSGSGLPDPSQLFRVVSTPPPPPSLTVDTTISDSQQVEAASPISSRPPAVPSSYEELIRLGGGGGAGHMVVDDDEADGRSGGGSGGSGGNRWPR
        MEPPAPGSGSGLPDPSQLFRVVSTPPPPPSLTVDTTISDS QVEAASPISSRPPAVPSSYEELIRL GGGG G MVVDDDEADGRSGGGSGGSGGNRWPR
Subjt:  MEPPAPGSGSGLPDPSQLFRVVSTPPPPPSLTVDTTISDSQQVEAASPISSRPPAVPSSYEELIRLGGGGGAGHMVVDDDEADGRSGGGSGGSGGNRWPR

Query:  QETLALLKIRSEMDSVFRDATLKGPLWDEVSR
        QETLALLKIRSEMDSVFRDATLKGPLWDEVSR
Subjt:  QETLALLKIRSEMDSVFRDATLKGPLWDEVSR

XP_011654663.1 trihelix transcription factor GTL1 isoform X2 [Cucumis sativus]1.50e-7896.97Show/hide
Query:  MEPPAPGSGSGLPDPSQLFRVVSTPPPPPSLTVDTTISDSQQVEAASPISSRPPAVPSSYEELIRLGGGGGAGHMVVDDDEADGRSGGGSGGSGGNRWPR
        MEPPAPGSGSGLPDPSQLFRVVSTPPPPPSLTVDTTISDS QVEAASPISSRPPAVPSSYEELIRL GGGG G MVVDDDEADGRSGGGSGGSGGNRWPR
Subjt:  MEPPAPGSGSGLPDPSQLFRVVSTPPPPPSLTVDTTISDSQQVEAASPISSRPPAVPSSYEELIRLGGGGGAGHMVVDDDEADGRSGGGSGGSGGNRWPR

Query:  QETLALLKIRSEMDSVFRDATLKGPLWDEVSR
        QETLALLKIRSEMDSVFRDATLKGPLWDEVSR
Subjt:  QETLALLKIRSEMDSVFRDATLKGPLWDEVSR

XP_038874541.1 trihelix transcription factor GTL1-like isoform X3 [Benincasa hispida]4.82e-5380.88Show/hide
Query:  MEPPAPGSGSGL--PDPSQLFRVVSTPPPPPSLTVDTTISDSQQVEAASPISSRPPAVPSS--YEELIRLGGGGGAGHMVVDDDEADGRSGGGSGGSGGN
        ME  A GSGSGL  PD SQLF V S PP    LT+D TI DSQQVEAASPISSRPPAVPSS  YEELIRLGGGGG G MVVDD+EAD RSG   GGSGGN
Subjt:  MEPPAPGSGSGL--PDPSQLFRVVSTPPPPPSLTVDTTISDSQQVEAASPISSRPPAVPSS--YEELIRLGGGGGAGHMVVDDDEADGRSGGGSGGSGGN

Query:  RWPRQETLALLKIRSEMDSVFRDATLKGPLWDEVSR
        RWPRQETLALLKIRSEMDS FRDATLKGPLWDEVSR
Subjt:  RWPRQETLALLKIRSEMDSVFRDATLKGPLWDEVSR

XP_038874542.1 trihelix transcription factor GTL1-like isoform X4 [Benincasa hispida]4.82e-5380.88Show/hide
Query:  MEPPAPGSGSGL--PDPSQLFRVVSTPPPPPSLTVDTTISDSQQVEAASPISSRPPAVPSS--YEELIRLGGGGGAGHMVVDDDEADGRSGGGSGGSGGN
        ME  A GSGSGL  PD SQLF V S PP    LT+D TI DSQQVEAASPISSRPPAVPSS  YEELIRLGGGGG G MVVDD+EAD RSG   GGSGGN
Subjt:  MEPPAPGSGSGL--PDPSQLFRVVSTPPPPPSLTVDTTISDSQQVEAASPISSRPPAVPSS--YEELIRLGGGGGAGHMVVDDDEADGRSGGGSGGSGGN

Query:  RWPRQETLALLKIRSEMDSVFRDATLKGPLWDEVSR
        RWPRQETLALLKIRSEMDS FRDATLKGPLWDEVSR
Subjt:  RWPRQETLALLKIRSEMDSVFRDATLKGPLWDEVSR

TrEMBL top hitse value%identityAlignment
A0A5A7TMN2 Trihelix transcription factor GTL1 isoform X25.4e-66100Show/hide
Query:  MEPPAPGSGSGLPDPSQLFRVVSTPPPPPSLTVDTTISDSQQVEAASPISSRPPAVPSSYEELIRLGGGGGAGHMVVDDDEADGRSGGGSGGSGGNRWPR
        MEPPAPGSGSGLPDPSQLFRVVSTPPPPPSLTVDTTISDSQQVEAASPISSRPPAVPSSYEELIRLGGGGGAGHMVVDDDEADGRSGGGSGGSGGNRWPR
Subjt:  MEPPAPGSGSGLPDPSQLFRVVSTPPPPPSLTVDTTISDSQQVEAASPISSRPPAVPSSYEELIRLGGGGGAGHMVVDDDEADGRSGGGSGGSGGNRWPR

Query:  QETLALLKIRSEMDSVFRDATLKGPLWDEVSR
        QETLALLKIRSEMDSVFRDATLKGPLWDEVSR
Subjt:  QETLALLKIRSEMDSVFRDATLKGPLWDEVSR

A0A6J1ELD6 trihelix transcription factor GTL1-like isoform X11.1e-2966.92Show/hide
Query:  GSGSGLPDPSQLFRVVSTPPPPPSLTVDTTISDSQQVEAASPISSRPPAVPS-SYEELIRLGGGGGAGHMVVDDD-----EADGRSG-GGSGGSGGNRWP
        G GSG    S+LF V       PSLTVD  +SDSQ VEAASPISSRPPA  S +YEELIR     G G M +DDD     +A G SG GG GGS GNRWP
Subjt:  GSGSGLPDPSQLFRVVSTPPPPPSLTVDTTISDSQQVEAASPISSRPPAVPS-SYEELIRLGGGGGAGHMVVDDD-----EADGRSG-GGSGGSGGNRWP

Query:  RQETLALLKIRSEMDSVFRDATLKGPLWDEVSR
        RQETLALLKIRS+MDS FRDATLKGPLWDEVSR
Subjt:  RQETLALLKIRSEMDSVFRDATLKGPLWDEVSR

A0A6J1EQK5 trihelix transcription factor GTL1-like isoform X21.1e-2966.92Show/hide
Query:  GSGSGLPDPSQLFRVVSTPPPPPSLTVDTTISDSQQVEAASPISSRPPAVPS-SYEELIRLGGGGGAGHMVVDDD-----EADGRSG-GGSGGSGGNRWP
        G GSG    S+LF V       PSLTVD  +SDSQ VEAASPISSRPPA  S +YEELIR     G G M +DDD     +A G SG GG GGS GNRWP
Subjt:  GSGSGLPDPSQLFRVVSTPPPPPSLTVDTTISDSQQVEAASPISSRPPAVPS-SYEELIRLGGGGGAGHMVVDDD-----EADGRSG-GGSGGSGGNRWP

Query:  RQETLALLKIRSEMDSVFRDATLKGPLWDEVSR
        RQETLALLKIRS+MDS FRDATLKGPLWDEVSR
Subjt:  RQETLALLKIRSEMDSVFRDATLKGPLWDEVSR

A0A6J1I2L2 trihelix transcription factor GTL1-like isoform X13.6e-3067.72Show/hide
Query:  GSGSGLPDPSQLFRVVSTPPPPPSLTVDTTISDSQQVEAASPISSRPPAVPS-SYEELIRLGGGGGAGHMVVDDDEADGRSGGGSGGSGGNRWPRQETLA
        G GSG    S+LF V  TPP    LTV+  +SDSQ VEAASPISSRPPA  S +YEELIR     G G M +DDD   G   GG GGS GNRWPRQETLA
Subjt:  GSGSGLPDPSQLFRVVSTPPPPPSLTVDTTISDSQQVEAASPISSRPPAVPS-SYEELIRLGGGGGAGHMVVDDDEADGRSGGGSGGSGGNRWPRQETLA

Query:  LLKIRSEMDSVFRDATLKGPLWDEVSR
        LLKIRS+MDS FRDATLKGPLWDEVSR
Subjt:  LLKIRSEMDSVFRDATLKGPLWDEVSR

A0A6J1I499 trihelix transcription factor GTL1-like isoform X23.6e-3067.72Show/hide
Query:  GSGSGLPDPSQLFRVVSTPPPPPSLTVDTTISDSQQVEAASPISSRPPAVPS-SYEELIRLGGGGGAGHMVVDDDEADGRSGGGSGGSGGNRWPRQETLA
        G GSG    S+LF V  TPP    LTV+  +SDSQ VEAASPISSRPPA  S +YEELIR     G G M +DDD   G   GG GGS GNRWPRQETLA
Subjt:  GSGSGLPDPSQLFRVVSTPPPPPSLTVDTTISDSQQVEAASPISSRPPAVPS-SYEELIRLGGGGGAGHMVVDDDEADGRSGGGSGGSGGNRWPRQETLA

Query:  LLKIRSEMDSVFRDATLKGPLWDEVSR
        LLKIRS+MDS FRDATLKGPLWDEVSR
Subjt:  LLKIRSEMDSVFRDATLKGPLWDEVSR

SwissProt top hitse value%identityAlignment
Q39117 Trihelix transcription factor GT-29.3e-1560.94Show/hide
Query:  GGGAGHMVVDDDEADGRSGGGSGGSGGNRWPRQETLALLKIRSEMDSVFRDATLKGPLWDEVSR
        GGG G  V ++ +      G   GSGGNRWPR ETLALL+IRSEMD  FRD+TLK PLW+E+SR
Subjt:  GGGAGHMVVDDDEADGRSGGGSGGSGGNRWPRQETLALLKIRSEMDSVFRDATLKGPLWDEVSR

Q9C6K3 Trihelix transcription factor DF18.7e-1380.49Show/hide
Query:  GSGGNRWPRQETLALLKIRSEMDSVFRDATLKGPLWDEVSR
        G GGNRWPRQETLALLKIRS+M   FRDA++KGPLW+EVSR
Subjt:  GSGGNRWPRQETLALLKIRSEMDSVFRDATLKGPLWDEVSR

Q9C882 Trihelix transcription factor GTL12.1e-1955.88Show/hide
Query:  SQQVEAASPISSRPPAVPSSYEELIR---------LGGGGGAGHMVVDDDEADGRSGGGSGGSGGNRWPRQETLALLKIRSEMDSVFRDATLKGPLWDEV
        ++ VE ASPISSRPPA  ++ EEL+R         LGGGGG G             GG +  S GNRWPR+ETLALL+IRS+MDS FRDATLK PLW+ V
Subjt:  SQQVEAASPISSRPPAVPSSYEELIR---------LGGGGGAGHMVVDDDEADGRSGGGSGGSGGNRWPRQETLALLKIRSEMDSVFRDATLKGPLWDEV

Query:  SR
        SR
Subjt:  SR

Q9LZS0 Trihelix transcription factor PTL2.4e-1038.58Show/hide
Query:  PGSGSGLPDPSQLFRVVSTPPPPPSLTVDTTISDSQQVEAASPISSRPPAVPSSYEELIRLGGGGGAGHMVVDDDEADGRSGGGSGGSGGNRWPRQETLA
        P + S  P     F +    PPP  L   TT  D   +           +   +   L     GGG G     D    G   GG GG G  RWPRQETL 
Subjt:  PGSGSGLPDPSQLFRVVSTPPPPPSLTVDTTISDSQQVEAASPISSRPPAVPSSYEELIRLGGGGGAGHMVVDDDEADGRSGGGSGGSGGNRWPRQETLA

Query:  LLKIRSEMDSVFRDATLKGPLWDEVSR
        LL+IRS +D  F++A  KGPLWDEVSR
Subjt:  LLKIRSEMDSVFRDATLKGPLWDEVSR

Arabidopsis top hitse value%identityAlignment
AT1G33240.1 GT-2-like 11.5e-2055.88Show/hide
Query:  SQQVEAASPISSRPPAVPSSYEELIR---------LGGGGGAGHMVVDDDEADGRSGGGSGGSGGNRWPRQETLALLKIRSEMDSVFRDATLKGPLWDEV
        ++ VE ASPISSRPPA  ++ EEL+R         LGGGGG G             GG +  S GNRWPR+ETLALL+IRS+MDS FRDATLK PLW+ V
Subjt:  SQQVEAASPISSRPPAVPSSYEELIR---------LGGGGGAGHMVVDDDEADGRSGGGSGGSGGNRWPRQETLALLKIRSEMDSVFRDATLKGPLWDEV

Query:  SR
        SR
Subjt:  SR

AT1G76880.1 Duplicated homeodomain-like superfamily protein6.2e-1480.49Show/hide
Query:  GSGGNRWPRQETLALLKIRSEMDSVFRDATLKGPLWDEVSR
        G GGNRWPRQETLALLKIRS+M   FRDA++KGPLW+EVSR
Subjt:  GSGGNRWPRQETLALLKIRSEMDSVFRDATLKGPLWDEVSR

AT1G76890.2 Duplicated homeodomain-like superfamily protein6.6e-1660.94Show/hide
Query:  GGGAGHMVVDDDEADGRSGGGSGGSGGNRWPRQETLALLKIRSEMDSVFRDATLKGPLWDEVSR
        GGG G  V ++ +      G   GSGGNRWPR ETLALL+IRSEMD  FRD+TLK PLW+E+SR
Subjt:  GGGAGHMVVDDDEADGRSGGGSGGSGGNRWPRQETLALLKIRSEMDSVFRDATLKGPLWDEVSR

AT3G10000.1 Homeodomain-like superfamily protein1.4e-1058.18Show/hide
Query:  EADGRSGGGSG---GSGGNRWPRQETLALLKIRSEMDSVFRDATLKGPLWDEVSR
        ++ G  GG SG   G G  RWPRQETL LL++RS +D  F++A  KGPLWDEVSR
Subjt:  EADGRSGGGSG---GSGGNRWPRQETLALLKIRSEMDSVFRDATLKGPLWDEVSR

AT5G03680.1 Duplicated homeodomain-like superfamily protein1.7e-1138.58Show/hide
Query:  PGSGSGLPDPSQLFRVVSTPPPPPSLTVDTTISDSQQVEAASPISSRPPAVPSSYEELIRLGGGGGAGHMVVDDDEADGRSGGGSGGSGGNRWPRQETLA
        P + S  P     F +    PPP  L   TT  D   +           +   +   L     GGG G     D    G   GG GG G  RWPRQETL 
Subjt:  PGSGSGLPDPSQLFRVVSTPPPPPSLTVDTTISDSQQVEAASPISSRPPAVPSSYEELIRLGGGGGAGHMVVDDDEADGRSGGGSGGSGGNRWPRQETLA

Query:  LLKIRSEMDSVFRDATLKGPLWDEVSR
        LL+IRS +D  F++A  KGPLWDEVSR
Subjt:  LLKIRSEMDSVFRDATLKGPLWDEVSR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACCACCCGCTCCTGGATCTGGATCAGGATTACCTGATCCATCTCAATTATTTAGAGTAGTTTCCACACCACCACCACCGCCGTCTTTAACTGTTGATACCACTAT
AAGTGATTCTCAACAAGTCGAAGCTGCTTCTCCCATTAGTAGCCGACCTCCTGCTGTACCATCTTCTTACGAGGAGCTCATTCGTCTCGGCGGCGGCGGTGGTGCTGGTC
ATATGGTGGTCGACGACGATGAAGCTGACGGCCGTAGCGGCGGCGGAAGTGGAGGAAGTGGTGGAAATCGGTGGCCGCGTCAGGAAACACTTGCTTTGCTTAAAATTAGG
TCGGAGATGGATTCGGTATTTCGTGATGCTACACTTAAAGGTCCCCTTTGGGATGAAGTCTCCAGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAACCACCCGCTCCTGGATCTGGATCAGGATTACCTGATCCATCTCAATTATTTAGAGTAGTTTCCACACCACCACCACCGCCGTCTTTAACTGTTGATACCACTAT
AAGTGATTCTCAACAAGTCGAAGCTGCTTCTCCCATTAGTAGCCGACCTCCTGCTGTACCATCTTCTTACGAGGAGCTCATTCGTCTCGGCGGCGGCGGTGGTGCTGGTC
ATATGGTGGTCGACGACGATGAAGCTGACGGCCGTAGCGGCGGCGGAAGTGGAGGAAGTGGTGGAAATCGGTGGCCGCGTCAGGAAACACTTGCTTTGCTTAAAATTAGG
TCGGAGATGGATTCGGTATTTCGTGATGCTACACTTAAAGGTCCCCTTTGGGATGAAGTCTCCAGGTAA
Protein sequenceShow/hide protein sequence
MEPPAPGSGSGLPDPSQLFRVVSTPPPPPSLTVDTTISDSQQVEAASPISSRPPAVPSSYEELIRLGGGGGAGHMVVDDDEADGRSGGGSGGSGGNRWPRQETLALLKIR
SEMDSVFRDATLKGPLWDEVSR