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IVF0008576 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0008576
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr12:10437706..10452733
RNA-Seq ExpressionIVF0008576
SyntenyIVF0008576
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
GO:0003824 - catalytic activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059489.1 ribosomal protein L5 [Cucumis melo var. makuwa]1.53e-1762.03Show/hide
Query:  MPRTQFSRPGVKSGPQTVSSLCIVSVISLSIFVLDFNPYSSHAPR---HVF-QGIGREASSLEREPRCDPKRSNRWPMI
        MPRTQFS P VKSG  TVSSLC V VISLSIF    +  S H P    H F QGIGRE SSLE +  C+PK S RWPM+
Subjt:  MPRTQFSRPGVKSGPQTVSSLCIVSVISLSIFVLDFNPYSSHAPR---HVF-QGIGREASSLEREPRCDPKRSNRWPMI

KAA0061317.1 hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa]7.61e-2451.88Show/hide
Query:  MPRTQFSRPGVKSGPQTVSSLCIVSVISLSIF---VLDFNPYSSHAPRHVF-QGIGREASSLEREPRCDPKRSNRWPMILMSGECSSSVRNHCKRHLQRR
        MPRTQFSR   K  PQ       V VISLSIF    L  + ++S    H+F QGIGREASSLE E   DPKR  RWPM+  SGE  S VRNH K      
Subjt:  MPRTQFSRPGVKSGPQTVSSLCIVSVISLSIF---VLDFNPYSSHAPRHVF-QGIGREASSLEREPRCDPKRSNRWPMILMSGECSSSVRNHCKRHLQRR

Query:  KRAELEDFRCSAKKTQARMSRTQFSRPGVKSDP
         R           KT+ RMSRTQFSRP  KSDP
Subjt:  KRAELEDFRCSAKKTQARMSRTQFSRPGVKSDP

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]6.32e-2652.21Show/hide
Query:  RARMPRTQFSRPGVKSGPQTVSSLCIVSVISLSIFVLDFNPYSSHA----PRHVFQGIGREASSLEREPRCDPKRSNRWPMILMSGECSSSVRNHCKRHL
        RARMPR+QFSR G KS   TVSSLC V VI+LSIF       S+H     P    +GIG+EASSLE E  C+PKRS RW M+  S E SS +RNH K   
Subjt:  RARMPRTQFSRPGVKSGPQTVSSLCIVSVISLSIFVLDFNPYSSHA----PRHVFQGIGREASSLEREPRCDPKRSNRWPMILMSGECSSSVRNHCKRHL

Query:  QRRKRAELEDFRCSAKKTQARMSRTQFSRPGVKSDP
                       KKT+ARM RTQFSR G KS P
Subjt:  QRRKRAELEDFRCSAKKTQARMSRTQFSRPGVKSDP

TYK15439.1 uncharacterized protein E5676_scaffold477G00010 [Cucumis melo var. makuwa]3.62e-1658.54Show/hide
Query:  VKSGPQTVSSLCIVSVISLSIFVLDFNPYSSHAPR---HVFQG-IGREASSLEREPRCDPKRSNRWPMILMSGECSSSVRNH
        VKSGP TVSS+C V VI LSIF       S+H P     +F G I REA SLE E  CDPKRS RWPM+  SG+ SS VRNH
Subjt:  VKSGPQTVSSLCIVSVISLSIFVLDFNPYSSHAPR---HVFQG-IGREASSLEREPRCDPKRSNRWPMILMSGECSSSVRNH

TYK23424.1 gag/pol protein [Cucumis melo var. makuwa]7.31e-1646.77Show/hide
Query:  ARMPRTQFSRPGVKSGPQTVSSLCIVSVISLSIFVLDFNPYSSHAP---RHVFQ-GIGREASSLEREPRCDPKRSNRWPMILMSGECSSSVRNHCKRHLQ
        AR P+ QFS  GVKSG  TVSSL ++ +I L +F       S+H P    H    GIGREASSLE E  CDPKRS  W M+  SG  SS VRNH K    
Subjt:  ARMPRTQFSRPGVKSGPQTVSSLCIVSVISLSIFVLDFNPYSSHAP---RHVFQ-GIGREASSLEREPRCDPKRSNRWPMILMSGECSSSVRNHCKRHLQ

Query:  RRKRAELEDFRCSAKKTQARMSRT
         R +          +KTQAR+  T
Subjt:  RRKRAELEDFRCSAKKTQARMSRT

TrEMBL top hitse value%identityAlignment
A0A5A7V129 Ribosomal protein L5 (Mitochondrion)4.4e-1362.03Show/hide
Query:  MPRTQFSRPGVKSGPQTVSSLCIVSVISLSIFVLDFNPYSSHAP---RHVF-QGIGREASSLEREPRCDPKRSNRWPMI
        MPRTQFS P VKSG  TVSSLC V VISLSIF    +  S H P    H F QGIGRE SSLE +  C+PK S RWPM+
Subjt:  MPRTQFSRPGVKSGPQTVSSLCIVSVISLSIFVLDFNPYSSHAP---RHVF-QGIGREASSLEREPRCDPKRSNRWPMI

A0A5A7V368 Uncharacterized protein2.0e-1851.88Show/hide
Query:  MPRTQFSRPGVKSGPQTVSSLCIVSVISLSIF---VLDFNPYSSHAPRHVF-QGIGREASSLEREPRCDPKRSNRWPMILMSGECSSSVRNHCKRHLQRR
        MPRTQFSR   K  PQ       V VISLSIF    L  + ++S    H+F QGIGREASSLE E   DPKR  RWPM+  SGE  S VRNH K      
Subjt:  MPRTQFSRPGVKSGPQTVSSLCIVSVISLSIF---VLDFNPYSSHAPRHVF-QGIGREASSLEREPRCDPKRSNRWPMILMSGECSSSVRNHCKRHLQRR

Query:  KRAELEDFRCSAKKTQARMSRTQFSRPGVKSDP
         R           KT+ RMSRTQFSRP  KSDP
Subjt:  KRAELEDFRCSAKKTQARMSRTQFSRPGVKSDP

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein1.2e-2151.82Show/hide
Query:  RARMPRTQFSRPGVKSGPQTVSSLCIVSVISLSIFVLDFNPYSSHA----PRHVFQGIGREASSLEREPRCDPKRSNRWPMILMSGECSSSVRNHCKRHL
        RARMPR+QFSR G KS   TVSSLC V VI+LSIF       S+H     P    +GIG+EASSLE E  C+PKRS RW M+  S E SS +RNH K   
Subjt:  RARMPRTQFSRPGVKSGPQTVSSLCIVSVISLSIFVLDFNPYSSHA----PRHVFQGIGREASSLEREPRCDPKRSNRWPMILMSGECSSSVRNHCKRHL

Query:  QRRKRAELEDFRCSAKKTQARMSRTQFSRPGVKSDPR
                       KKT+ARM RTQFSR G KS P+
Subjt:  QRRKRAELEDFRCSAKKTQARMSRTQFSRPGVKSDPR

A0A5A7VEB1 Retrotransposon protein, putative, Ty3-gypsy subclass, expressed3.7e-1243.7Show/hide
Query:  MRARMPRTQFSRPGVKSGPQTVSSLCIVSVISLSIF---VLDFNPYSSHAPRHVF-QGIGREASSLEREPRCDPKRSNRWPMILMSGECSSSVRNHCKRH
        +R RMP TQF   GVK+GP  VS  C+V VIS S F    L  + Y     RH F Q IGREASS + E RC+PKRS  WP++      +  V    K  
Subjt:  MRARMPRTQFSRPGVKSGPQTVSSLCIVSVISLSIF---VLDFNPYSSHAPRHVF-QGIGREASSLEREPRCDPKRSNRWPMILMSGECSSSVRNHCKRH

Query:  LQRRKRAELEDFRCSAKKT
         Q+ K A+L++F CS++++
Subjt:  LQRRKRAELEDFRCSAKKT

A0A5D3DIF8 Gag/pol protein1.6e-1548.82Show/hide
Query:  KSGPQTVSSLCIVSVISLSIFVLDFNPYSSHA----PRHVFQGIGREASSLEREPRCDPKRSNRWPMILMSGECSSSVRNHCKRHLQRRKRAELEDFRCS
        K+  QTVSSL  + VISL IF       S+H     P    QGIGREASSLE E RCDPK   RWPM+  SGE SS VRN+ KR    R R         
Subjt:  KSGPQTVSSLCIVSVISLSIFVLDFNPYSSHA----PRHVFQGIGREASSLEREPRCDPKRSNRWPMILMSGECSSSVRNHCKRHLQRRKRAELEDFRCS

Query:  AKKTQARMSRTQFSRPGVKSDPRQFLP
         KKT ARM +TQF RP   +     LP
Subjt:  AKKTQARMSRTQFSRPGVKSDPRQFLP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAGCGAGAATGCCCCGGACTCAATTTTCTCGTCCAGGGGTAAAAAGCGGTCCTCAGACGGTTTCTTCCCTTTGCATCGTATCGGTCATAAGTCTTTCGATCTTTGT
GCTCGATTTCAATCCATACTCCTCGCATGCTCCCCGACATGTTTTCCAAGGTATAGGTCGGGAAGCGAGCTCGTTGGAGCGAGAACCAAGGTGCGACCCAAAACGGTCCA
ATAGATGGCCAATGATTCTAATGAGTGGTGAATGCTCGTCCAGTGTAAGAAACCACTGCAAAAGGCACTTGCAGCGAAGGAAACGGGCTGAGCTCGAGGACTTCCGGTGT
TCGGCCAAGAAAACGCAAGCGAGAATGTCCCGGACTCAATTTTCTCGTCCTGGGGTGAAAAGCGATCCTCGACAGTTTCTTCCTTTTGCATCGTATCGGTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGCGAGCGAGAATGCCCCGGACTCAATTTTCTCGTCCAGGGGTAAAAAGCGGTCCTCAGACGGTTTCTTCCCTTTGCATCGTATCGGTCATAAGTCTTTCGATCTTTGT
GCTCGATTTCAATCCATACTCCTCGCATGCTCCCCGACATGTTTTCCAAGGTATAGGTCGGGAAGCGAGCTCGTTGGAGCGAGAACCAAGGTGCGACCCAAAACGGTCCA
ATAGATGGCCAATGATTCTAATGAGTGGTGAATGCTCGTCCAGTGTAAGAAACCACTGCAAAAGGCACTTGCAGCGAAGGAAACGGGCTGAGCTCGAGGACTTCCGGTGT
TCGGCCAAGAAAACGCAAGCGAGAATGTCCCGGACTCAATTTTCTCGTCCTGGGGTGAAAAGCGATCCTCGACAGTTTCTTCCTTTTGCATCGTATCGGTCATAA
Protein sequenceShow/hide protein sequence
MRARMPRTQFSRPGVKSGPQTVSSLCIVSVISLSIFVLDFNPYSSHAPRHVFQGIGREASSLEREPRCDPKRSNRWPMILMSGECSSSVRNHCKRHLQRRKRAELEDFRC
SAKKTQARMSRTQFSRPGVKSDPRQFLPFASYRS