CuGenDBv2

Gene ID	IVF0008632
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	classical arabinogalactan protein 25
Genome location	chr11:26711462..26712049
RNA-Seq Expression	IVF0008632
Synteny	IVF0008632
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR039346 - Classical arabinogalactan protein 25/26

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6575045.1 hypothetical protein SDJN03_25684, partial [Cucurbita argyrosperma subsp. sororia]

3.79e-55

79.84

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Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL
        MASFWYC+AVIM FMASPLLALPS+PNPK SS FQELSP+IAPLLPS+G  IPSA+GS IPTIPSNPSPPNPD+FEA GPDSSALSP GLPGSFA P SL
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL

Query:  PCYSNWLLLLLNGLALLAFSMHLH
        P YSN LLLL   L+L AF +HLH
Subjt:  PCYSNWLLLLLNGLALLAFSMHLH

XP_008458497.1 PREDICTED: classical arabinogalactan protein 25 [Cucumis melo]

4.86e-81

100

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Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL
        MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL

Query:  PCYSNWLLLLLNGLALLAFSMHLH
        PCYSNWLLLLLNGLALLAFSMHLH
Subjt:  PCYSNWLLLLLNGLALLAFSMHLH

XP_011656664.1 classical arabinogalactan protein 25 [Cucumis sativus]

1.98e-80

99.19

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Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL
        MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL

Query:  PCYSNWLLLLLNGLALLAFSMHLH
        PCYSNWLLLLLNGLALL FSMHLH
Subjt:  PCYSNWLLLLLNGLALLAFSMHLH

XP_023006472.1 classical arabinogalactan protein 25-like [Cucurbita maxima]

3.67e-55

79.84

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Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL
        MASFWYC+AVIM FMASPLLALPS+PNPK S  FQELSP+IAPLLPSTG  IPSATGS IPTIPSNPSPPNPD+FEA GPDSSALSPFGLPGSFA P  L
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL

Query:  PCYSNWLLLLLNGLALLAFSMHLH
        P YSN LLL    L+L AF +HLH
Subjt:  PCYSNWLLLLLNGLALLAFSMHLH

XP_023547783.1 classical arabinogalactan protein 25-like [Cucurbita pepo subsp. pepo]

2.67e-55

79.84

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Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL
        MASFWYC+AVIM FMASPLLALPS+PNPK SS FQELSP+IAPLLPS+G  IPSA+GS IPTIPSNPSPPNPD+FEA GPDSSALSPFGLPGSFA P  L
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL

Query:  PCYSNWLLLLLNGLALLAFSMHLH
        P YSN LLLL   L+L AF +HLH
Subjt:  PCYSNWLLLLLNGLALLAFSMHLH

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KBF8 Uncharacterized protein

8.3e-61

99.19

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Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL
        MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL

Query:  PCYSNWLLLLLNGLALLAFSMHLH
        PCYSNWLLLLLNGLALL FSMHLH
Subjt:  PCYSNWLLLLLNGLALLAFSMHLH

A0A1S3C8K2 classical arabinogalactan protein 25

2.9e-61

100

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Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL
        MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL

Query:  PCYSNWLLLLLNGLALLAFSMHLH
        PCYSNWLLLLLNGLALLAFSMHLH
Subjt:  PCYSNWLLLLLNGLALLAFSMHLH

A0A5A7SSC0 Classical arabinogalactan protein 25

2.9e-61

100

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Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL
        MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL

Query:  PCYSNWLLLLLNGLALLAFSMHLH
        PCYSNWLLLLLNGLALLAFSMHLH
Subjt:  PCYSNWLLLLLNGLALLAFSMHLH

A0A6J1H4T0 classical arabinogalactan protein 25-like

2.1e-40

78.23

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Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL
        MASFWYC+AVIM  MASPLLALPS+PNPK SS FQELSP+IAPLLPS+G  IPSA+G SIPTIPSNPSPPNPD+FEA GPDSSALSP GLPGSFA P  L
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL

Query:  PCYSNWLLLLLNGLALLAFSMHLH
        P YSN  LLLL  L+L AF +HLH
Subjt:  PCYSNWLLLLLNGLALLAFSMHLH

A0A6J1KVY5 classical arabinogalactan protein 25-like

1.1e-41

79.84

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Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL
        MASFWYC+AVIM FMASPLLALPS+PNPK S  FQELSP+IAPLLPSTG  IPSATG SIPTIPSNPSPPNPD+FEA GPDSSALSPFGLPGSFA P  L
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL

Query:  PCYSNWLLLLLNGLALLAFSMHLH
        P YSN   LLL  L+L AF +HLH
Subjt:  PCYSNWLLLLLNGLALLAFSMHLH

SwissProt top hits

e value

%identity

Alignment

Q6NN00 Classical arabinogalactan protein 25

8.4e-10

41.67

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Query:  SFWYCSAVIMVFMASPLLALPSVPNPKPS-SPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLP--GSFAPPNS
        +F + + ++++F    +    S+ +  P+ S  Q+LSPEIAPLLPS GD +PS  GS   TIPS+PSPP+PD  +   PD  A SPF  P   S +PP S
Subjt:  SFWYCSAVIMVFMASPLLALPSVPNPKPS-SPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLP--GSFAPPNS

Query:  LPCYSNWLL-LLLNGLALLA
        LP     L+ L+++  + LA
Subjt:  LPCYSNWLL-LLLNGLALLA

Arabidopsis top hits

e value

%identity

Alignment

AT5G18690.1 arabinogalactan protein 25

6.0e-11

41.67

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Query:  SFWYCSAVIMVFMASPLLALPSVPNPKPS-SPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLP--GSFAPPNS
        +F + + ++++F    +    S+ +  P+ S  Q+LSPEIAPLLPS GD +PS  GS   TIPS+PSPP+PD  +   PD  A SPF  P   S +PP S
Subjt:  SFWYCSAVIMVFMASPLLALPSVPNPKPS-SPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLP--GSFAPPNS

Query:  LPCYSNWLL-LLLNGLALLA
        LP     L+ L+++  + LA
Subjt:  LPCYSNWLL-LLLNGLALLA

Sequences

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CDS sequence

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ATGGCCTCCTTTTGGTATTGTTCAGCAGTCATTATGGTTTTCATGGCCTCGCCATTGCTTGCTTTACCATCTGTACCCAATCCAAAACCCAGCTCGCCTTTCCAAGAACT
CTCCCCTGAAATTGCTCCATTATTGCCTTCTACTGGTGATAAGATTCCCTCTGCAACTGGTTCTTCTATTCCCACCATTCCTTCCAACCCCAGCCCCCCAAATCCAGATG
ACTTCGAAGCTCTTGGCCCTGATTCCTCTGCCCTTTCGCCATTTGGCCTCCCAGGTTCCTTTGCACCTCCTAATTCCTTGCCTTGCTATTCAAATTGGCTTCTTCTTCTT
CTCAATGGCTTAGCACTACTTGCCTTCTCTATGCACTTACATTGA

mRNA sequence

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CAAATATATTAGGCTACACACCCTCCAGTGATTTCATCATCATTAGAATGGCCTCCTTTTGGTATTGTTCAGCAGTCATTATGGTTTTCATGGCCTCGCCATTGCTTGCT
TTACCATCTGTACCCAATCCAAAACCCAGCTCGCCTTTCCAAGAACTCTCCCCTGAAATTGCTCCATTATTGCCTTCTACTGGTGATAAGATTCCCTCTGCAACTGGTTC
TTCTATTCCCACCATTCCTTCCAACCCCAGCCCCCCAAATCCAGATGACTTCGAAGCTCTTGGCCCTGATTCCTCTGCCCTTTCGCCATTTGGCCTCCCAGGTTCCTTTG
CACCTCCTAATTCCTTGCCTTGCTATTCAAATTGGCTTCTTCTTCTTCTCAATGGCTTAGCACTACTTGCCTTCTCTATGCACTTACATTGATTCTGGAAACATCTTTCT
GCATAAAGGAGTTCCAATTCTACTTGTACTTGATTCATCATATCCCAGAATGTTTCCCCTTCTTTTTTTACTCTTCTGTTAATTTCATTTTTCTGAGTATATGGAAAATG
GTACTTTTAGTTTAGCTTCTTTCCGTTCATCCATTGCT

Protein sequence

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MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSLPCYSNWLLLL
LNGLALLAFSMHLH

IVF0008632 (gene) of Melon (IVF77) v1 genome