CuGenDBv2

Gene ID	IVF0008639
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Expansin
Genome location	chr12:18902874..18903206
RNA-Seq Expression	IVF0008639
Synteny	IVF0008639
Gene Ontology terms	GO:0009664 - plant-type cell wall organization (biological process) GO:0005576 - extracellular region (cellular component) GO:0016020 - membrane (cellular component)
InterPro domains	IPR002963 - Expansin IPR007117 - Expansin, cellulose-binding-like domain IPR007118 - Expansin/Lol pI IPR036749 - Expansin, cellulose-binding-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

NP_001267591.1 expansin-A11-like precursor [Cucumis sativus]

2.49e-49

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Query:  VNHDTVPCKKRG-VRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQT
        V +  VPCKKRG VRFT+NGRDYF+ VLITNVGGA DI S+SIKGSKSSNWT +SRNWGANWQS+SYLNGQSLSF++TTSD Q QVFNNV+PSSWRFGQT
Subjt:  VNHDTVPCKKRG-VRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQT

XP_008445329.1 PREDICTED: expansin-A11 [Cucumis melo]

1.28e-49

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Query:  VNHDTVPCKKRG-VRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQT
        V +  VPCKKRG VRFT+NGRDYF+ VLITNVGGA DI S+SIKGSKSSNWT +SRNWGANWQS+SYLNGQSLSF+ITTSD QTQVFNN +PSSWRFGQT
Subjt:  VNHDTVPCKKRG-VRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQT

XP_022961884.1 expansin-A11-like [Cucurbita moschata]

3.71e-46

81.05

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Query:  VPC-KKRGVRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQT
        VPC KK GVRFT+NGRDYF+ VLI+NVGGA  I S+SIKGSKS NWT +SRNWGANWQS+SYLNGQSLSF+ITTSD QT+VFNNV+PSSWRFGQT
Subjt:  VPC-KKRGVRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQT

XP_022997603.1 expansin-A11-like [Cucurbita maxima]

3.71e-46

81.05

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Query:  VPC-KKRGVRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQT
        VPC KK GVRFT+NGRDYF+ VLI+NVGGA  I S+SIKGSKS NWT +SRNWGANWQS+SYLNGQSLSF+ITTSD QT+VFNNV+PSSWRFGQT
Subjt:  VPC-KKRGVRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQT

XP_038885990.1 expansin-A11-like [Benincasa hispida]

9.49e-47

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Query:  VNHDTVPC-KKRGVRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQT
        V +  V C KK GVRFT+NGRDYF+ VLI+NVGGA DI S+SIKGSKS+NWT +SRNWGANWQS+SYLNGQSLSF++TTSD QTQVFNNV+PSSWRFGQT
Subjt:  VNHDTVPC-KKRGVRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQT

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BCF4 Expansin

8.0e-39

81.19

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Query:  VNHDTVPCKKR-GVRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQT
        V +  VPCKKR GVRFT+NGRDYF+ VLITNVGGA DI S+SIKGSKSSNWT +SRNWGANWQS+SYLNGQSLSF+ITTSD QTQVFNN +PSSWRFGQT
Subjt:  VNHDTVPCKKR-GVRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQT

Query:  W
        +
Subjt:  W

A0A5A7VGJ6 Expansin

8.0e-39

81.19

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Query:  VNHDTVPCKKR-GVRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQT
        V +  VPCKKR GVRFT+NGRDYF+ VLITNVGGA DI S+SIKGSKSSNWT +SRNWGANWQS+SYLNGQSLSF+ITTSD QTQVFNN +PSSWRFGQT
Subjt:  VNHDTVPCKKR-GVRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQT

Query:  W
        +
Subjt:  W

A0A6J1HFB2 Expansin

3.7e-36

80.21

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Query:  VPC-KKRGVRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQTW
        VPC KK GVRFT+NGRDYF+ VLI+NVGGA  I S+SIKGSKS NWT +SRNWGANWQS+SYLNGQSLSF+ITTSD QT+VFNNV+PSSWRFGQT+
Subjt:  VPC-KKRGVRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQTW

A0A6J1KEE6 Expansin

3.7e-36

80.21

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Query:  VPC-KKRGVRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQTW
        VPC KK GVRFT+NGRDYF+ VLI+NVGGA  I S+SIKGSKS NWT +SRNWGANWQS+SYLNGQSLSF+ITTSD QT+VFNNV+PSSWRFGQT+
Subjt:  VPC-KKRGVRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQTW

Q39626 Expansin

1.4e-38

80.2

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Query:  VNHDTVPCKKR-GVRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQT
        V +  VPCKKR GVRFT+NGRDYF+ VLITNVGGA DI S+SIKGSKSSNWT +SRNWGANWQS+SYLNGQSLSF++TTSD Q QVFNNV+PSSWRFGQT
Subjt:  VNHDTVPCKKR-GVRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQT

Query:  W
        +
Subjt:  W

SwissProt top hits

e value

%identity

Alignment

O22874 Expansin-A8

2.0e-31

62.38

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Query:  VNHDTVPC-KKRGVRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQT
        V+   VPC KK G+RFTING  YF  VLI+NVGGA D+ ++SIKGSK+ +W ++SRNWG NWQS+SY+N QSLSF++TTSD +T V N+V PS+W+FGQT
Subjt:  VNHDTVPC-KKRGVRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQT

Query:  W
        +
Subjt:  W

O80622 Expansin-A15

9.4e-29

57.43

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Query:  VNHDTVPCKKR-GVRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQT
        V++  VPC +R G+RFTING  YF  VL+TNVGGA D+ S+++KGS+ + W  +SRNWG NWQS++ LNGQ+LSF++T SD +T V NN+ P+SW FGQT
Subjt:  VNHDTVPCKKR-GVRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQT

Query:  W
        +
Subjt:  W

Q38866 Expansin-A2

5.5e-29

62.5

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Query:  VPCKK-RGVRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQTW
        VPC+K  G+RFTING  YF  VLITNVGGA DI ++S+KGSK+  W S+SRNWG NWQS++YL GQSLSF++T SD +T V  +V+P  W+FGQT+
Subjt:  VPCKK-RGVRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQTW

Q7XWU8 Expansin-A1

5.5e-29

60.4

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Query:  VNHDTVPCKKR-GVRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQT
        V +  VPC K+ GVRFTINGRDYF+ VL++NVGG   I S+SIKGS+ + W ++SRNWG NWQS++YL+GQSLSF++T+SD QT  F +V P+ W FGQT
Subjt:  VNHDTVPCKKR-GVRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQT

Query:  W
        +
Subjt:  W

Q9C554 Expansin-A1

5.5e-29

62.38

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Query:  VNHDTVPCKKR-GVRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQT
        V +  VPC +R G+RFTING  YF  VLITNVGGA D+ S  +KGS+ + W ++SRNWG NWQS+SYLNGQSLSF++TTSD QT V NNV  + W FGQT
Subjt:  VNHDTVPCKKR-GVRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQT

Query:  W
        +
Subjt:  W

Arabidopsis top hits

e value

%identity

Alignment

AT1G69530.1 expansin A1

3.9e-30

62.38

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Query:  VNHDTVPCKKR-GVRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQT
        V +  VPC +R G+RFTING  YF  VLITNVGGA D+ S  +KGS+ + W ++SRNWG NWQS+SYLNGQSLSF++TTSD QT V NNV  + W FGQT
Subjt:  VNHDTVPCKKR-GVRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQT

Query:  W
        +
Subjt:  W

AT1G69530.2 expansin A1

3.9e-30

62.38

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Query:  VNHDTVPCKKR-GVRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQT
        V +  VPC +R G+RFTING  YF  VLITNVGGA D+ S  +KGS+ + W ++SRNWG NWQS+SYLNGQSLSF++TTSD QT V NNV  + W FGQT
Subjt:  VNHDTVPCKKR-GVRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQT

Query:  W
        +
Subjt:  W

AT1G69530.3 expansin A1

3.9e-30

62.38

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Query:  VNHDTVPCKKR-GVRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQT
        V +  VPC +R G+RFTING  YF  VLITNVGGA D+ S  +KGS+ + W ++SRNWG NWQS+SYLNGQSLSF++TTSD QT V NNV  + W FGQT
Subjt:  VNHDTVPCKKR-GVRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQT

Query:  W
        +
Subjt:  W

AT1G69530.4 expansin A1

3.9e-30

62.38

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Query:  VNHDTVPCKKR-GVRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQT
        V +  VPC +R G+RFTING  YF  VLITNVGGA D+ S  +KGS+ + W ++SRNWG NWQS+SYLNGQSLSF++TTSD QT V NNV  + W FGQT
Subjt:  VNHDTVPCKKR-GVRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQT

Query:  W
        +
Subjt:  W

AT2G40610.1 expansin A8

1.4e-32

62.38

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Query:  VNHDTVPC-KKRGVRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQT
        V+   VPC KK G+RFTING  YF  VLI+NVGGA D+ ++SIKGSK+ +W ++SRNWG NWQS+SY+N QSLSF++TTSD +T V N+V PS+W+FGQT
Subjt:  VNHDTVPC-KKRGVRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQT

Query:  W
        +
Subjt:  W

Sequences

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CDS sequence

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ATGAATTTGAGCATCGTTAATCATGATACGGTTCCTTGCAAAAAGAGAGGTGTAAGATTCACAATAAATGGTAGAGATTATTTTAAATTTGTTCTAATAACCAATGTGGG
AGGAGCTAATGACATCATATCAATATCTATTAAAGGCTCTAAATCAAGCAATTGGACCTCAATATCAAGGAATTGGGGGGCCAATTGGCAATCTGATTCCTATCTAAATG
GTCAATCTTTGTCCTTCGAGATCACCACAAGTGATAGCCAAACCCAAGTTTTCAACAACGTCATGCCTTCATCTTGGAGATTTGGCCAAACATGGCCAAACATTCGCTGG
TAG

mRNA sequence

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Protein sequence

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MNLSIVNHDTVPCKKRGVRFTINGRDYFKFVLITNVGGANDIISISIKGSKSSNWTSISRNWGANWQSDSYLNGQSLSFEITTSDSQTQVFNNVMPSSWRFGQTWPNIRW

IVF0008639 (gene) of Melon (IVF77) v1 genome