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IVF0008651 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0008651
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationchr12:4487151..4507508
RNA-Seq ExpressionIVF0008651
SyntenyIVF0008651
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047409.1 retrotransposon protein, putative, Ty3-gypsy sub-class [Cucumis melo var. makuwa]8.46e-1539.16Show/hide
Query:  MPQTQFFYLGVKSGPLTITLFC-------IGH------------------------------------------KCFLFCISHNCFDLQDSYSKDFSLHS
        MPQ+QFFY GVKSG  T++L C       +GH                                            ++ CI  + F  Q+SYS+DFSLHS
Subjt:  MPQTQFFYLGVKSGPLTITLFC-------IGH------------------------------------------KCFLFCISHNCFDLQDSYSKDFSLHS

Query:  WHCPSHIFTKYRSRCKLVGVRTKAQPRTIEKMANALRTSDERS
        W+CPS +  KY SR +L G RTK QP  IEKM NAL  S ERS
Subjt:  WHCPSHIFTKYRSRCKLVGVRTKAQPRTIEKMANALRTSDERS

KAA0051945.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]3.74e-2554.64Show/hide
Query:  EVNGLSSRTFGVRPKKMQSRMPQTQFFYLGVKSGPLTITLFCIGHKCFLFCISHNCFDLQDSYSKDFSLHSWHCPSHIFTKYRSRCKLVGVRTKAQP
        E NGLSS T  V PKK+Q+RMP T+F YL  KSGP T+ LF IGHKCF         +L DSY ++F+LHSWH PSHI++KYRS  +L G + ++ P
Subjt:  EVNGLSSRTFGVRPKKMQSRMPQTQFFYLGVKSGPLTITLFCIGHKCFLFCISHNCFDLQDSYSKDFSLHSWHCPSHIFTKYRSRCKLVGVRTKAQP

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]1.18e-1638.92Show/hide
Query:  SEVNGLSSRTFGVRPKKMQSRMPQTQFFYLGVKSGPLTITLFCI------------------------GHKCFLFCI-----------------------
        SE NGLS RT  V  +K+++RM  TQF +  VKS P T++LF +                         H      +                       
Subjt:  SEVNGLSSRTFGVRPKKMQSRMPQTQFFYLGVKSGPLTITLFCI------------------------GHKCFLFCI-----------------------

Query:  -SHNCFDLQDSYSKDFSLHSWHCPSHIFTKYRSRCKLVGVRTKAQPRTIEKMANALRTSDERSFHAR
         + N F+LQDS SKDFSLHS H PS +F KYRS C+LV  RTK Q   IEKMANALR S   SF  R
Subjt:  -SHNCFDLQDSYSKDFSLHSWHCPSHIFTKYRSRCKLVGVRTKAQPRTIEKMANALRTSDERSFHAR

KAA0065520.1 retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo var. makuwa]3.50e-1731.56Show/hide
Query:  SEVNGLSSRTFGVRPKKMQSRMPQTQFFYLGVKSGPLTITLFC---------------------------------------------------------
        S+ N LSSR   V P+K+++RMP TQFFYLGVK+GP  ++ FC                                                         
Subjt:  SEVNGLSSRTFGVRPKKMQSRMPQTQFFYLGVKSGPLTITLFC---------------------------------------------------------

Query:  -------------IGH-----KC------------------------------------FLFCISHNCFDLQDSYSKDFSLHSWHCPSHIFTKYRSRCKL
                     I H     KC                                     L C+ H  F+LQDSYS+DFSLHSW CPS +F KYR+  KL
Subjt:  -------------IGH-----KC------------------------------------FLFCISHNCFDLQDSYSKDFSLHSWHCPSHIFTKYRSRCKL

Query:  VGVRTKAQPRTIEKMANALRTSDER
        V  RTK Q  TIEKMAN L TS +R
Subjt:  VGVRTKAQPRTIEKMANALRTSDER

TYK23423.1 DUF4283 domain-containing protein [Cucumis melo var. makuwa]1.37e-1442.02Show/hide
Query:  LPTSGKCLSSVRSHGKCTSSEVNGLSSRTFGVRPKKMQSRMPQTQFFYLGVKSGPLTITLFCIGHKCFLFCISHNCFDLQDSYSKD---------FSLHS
        LPTS + LS VR+H K T SE NGL+SRT  VR KK ++RMPQT   + G KS P  ++       CF+  IS + F  +   +           F  HS
Subjt:  LPTSGKCLSSVRSHGKCTSSEVNGLSSRTFGVRPKKMQSRMPQTQFFYLGVKSGPLTITLFCIGHKCFLFCISHNCFDLQDSYSKD---------FSLHS

Query:  WHCPSHIFTKYRSRCKLVG
        WH P H+F +Y+S  +LVG
Subjt:  WHCPSHIFTKYRSRCKLVG

TrEMBL top hitse value%identityAlignment
A0A5A7VEB1 Retrotransposon protein, putative, Ty3-gypsy subclass, expressed3.4e-1364.62Show/hide
Query:  LFCISHNCFDLQDSYSKDFSLHSWHCPSHIFTKYRSRCKLVGVRTKAQPRTIEKMANALRTSDER
        L C+ H  F+LQDSYS+DFSLHSW CPS +F KYR+  KLV  RTK Q  TIEKMAN L TS +R
Subjt:  LFCISHNCFDLQDSYSKDFSLHSWHCPSHIFTKYRSRCKLVGVRTKAQPRTIEKMANALRTSDER

A0A5A7VEB1 Retrotransposon protein, putative, Ty3-gypsy subclass, expressed1.7e-0445.16Show/hide
Query:  PTSGKCLSSVRSHGKCTSSEVNGLSSRTFGVRPKKMQSRMPQTQFFYLGVKSGPLTITLFCI
        P+S + +    S  +   S+ N LSSR   V P+K+++RMP TQFFYLGVK+GP  ++ FC+
Subjt:  PTSGKCLSSVRSHGKCTSSEVNGLSSRTFGVRPKKMQSRMPQTQFFYLGVKSGPLTITLFCI

A0A5A7VEB1 Retrotransposon protein, putative, Ty3-gypsy subclass, expressed2.2e-1239.16Show/hide
Query:  MPQTQFFYLGVKSGPLTITLFC-------IGH------------------------------------------KCFLFCISHNCFDLQDSYSKDFSLHS
        MPQ+QFFY GVKSG  T++L C       +GH                                            ++ CI  + F  Q+SYS+DFSLHS
Subjt:  MPQTQFFYLGVKSGPLTITLFC-------IGH------------------------------------------KCFLFCISHNCFDLQDSYSKDFSLHS

Query:  WHCPSHIFTKYRSRCKLVGVRTKAQPRTIEKMANALRTSDERS
        W+CPS +  KY SR +L G RTK QP  IEKM NAL  S ERS
Subjt:  WHCPSHIFTKYRSRCKLVGVRTKAQPRTIEKMANALRTSDERS

A0A5A7VGQ5 Uncharacterized protein6.8e-1437.63Show/hide
Query:  LPTSGKCLSSVRSHGKCTSSEVNGLSSRTFGVRPKKMQSRMPQTQFFYLGVKSGPLTITLFCI------------------------GHKCFLFCI----
        LP+ G+  SS+        SE NGLS RT  V  +K+++RM  TQF +  VKS P T++LF +                         H      +    
Subjt:  LPTSGKCLSSVRSHGKCTSSEVNGLSSRTFGVRPKKMQSRMPQTQFFYLGVKSGPLTITLFCI------------------------GHKCFLFCI----

Query:  --------------------SHNCFDLQDSYSKDFSLHSWHCPSHIFTKYRSRCKLVGVRTKAQPRTIEKMANALRTSDERSFHAR
                            + N F+LQDS SKDFSLHS H PS +F KYRS C+LV  RTK Q   IEKMANALR S   SF  R
Subjt:  --------------------SHNCFDLQDSYSKDFSLHSWHCPSHIFTKYRSRCKLVGVRTKAQPRTIEKMANALRTSDERSFHAR

A0A5D3CKZ2 Pentatricopeptide repeat-containing protein7.0e-1954.08Show/hide
Query:  SEVNGLSSRTFGVRPKKMQSRMPQTQFFYLGVKSGPLTITLFCIGHKCFLFCISHNCFDLQDSYSKDFSLHSWHCPSHIFTKYRSRCKLVGVRTKAQP
        +E NGLSS T  V PKK+Q+RMP T+F YL  KSGP T+ LF IGHK         CF+L DSY ++F+LHSWH PSHI++KYRS  +L G + ++ P
Subjt:  SEVNGLSSRTFGVRPKKMQSRMPQTQFFYLGVKSGPLTITLFCIGHKCFLFCISHNCFDLQDSYSKDFSLHSWHCPSHIFTKYRSRCKLVGVRTKAQP

A0A5D3DIK9 DUF4283 domain-containing protein4.9e-1242.02Show/hide
Query:  LPTSGKCLSSVRSHGKCTSSEVNGLSSRTFGVRPKKMQSRMPQTQFFYLGVKSGPLTITLFCIGHKCFLFCISHNCFDLQDSYSKD---------FSLHS
        LPTS + LS VR+H K T SE NGL+SRT  VR KK ++RMPQT   + G KS P  ++       CF+  IS + F  +   +           F  HS
Subjt:  LPTSGKCLSSVRSHGKCTSSEVNGLSSRTFGVRPKKMQSRMPQTQFFYLGVKSGPLTITLFCIGHKCFLFCISHNCFDLQDSYSKD---------FSLHS

Query:  WHCPSHIFTKYRSRCKLVG
        WH P H+F +Y+S  +LVG
Subjt:  WHCPSHIFTKYRSRCKLVG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAATGCTCTTCCAACGAGTGGCAAATGCTTGTCCAGTGTTAGAAGCCATGGAAAATGCACTTCAAGCGAAGTAAACGGGCTAAGCTCAAGAACTTTTGGTGTTCG
TCCCAAGAAAATGCAATCAAGAATGCCCCAAACTCAGTTTTTCTATCTCGGGGTAAAAAGCGGACCTTTAACGATTACTTTGTTCTGTATTGGTCATAAGTGTTTTTTAT
TTTGTATTAGTCATAATTGTTTTGATCTTCAAGATTCATACTCCAAGGACTTCAGTCTACATTCCTGGCATTGTCCCTCACACATTTTCACAAAGTATAGGTCCAGATGC
AAGCTCGTTGGTGTAAGAACTAAGGCGCAACCCAGAACGATCGAAAAGATGGCTAATGCTCTTCGAACAAGTGATGAACGCTCATTCCATGCCAGAAATCACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACAATGCTCTTCCAACGAGTGGCAAATGCTTGTCCAGTGTTAGAAGCCATGGAAAATGCACTTCAAGCGAAGTAAACGGGCTAAGCTCAAGAACTTTTGGTGTTCG
TCCCAAGAAAATGCAATCAAGAATGCCCCAAACTCAGTTTTTCTATCTCGGGGTAAAAAGCGGACCTTTAACGATTACTTTGTTCTGTATTGGTCATAAGTGTTTTTTAT
TTTGTATTAGTCATAATTGTTTTGATCTTCAAGATTCATACTCCAAGGACTTCAGTCTACATTCCTGGCATTGTCCCTCACACATTTTCACAAAGTATAGGTCCAGATGC
AAGCTCGTTGGTGTAAGAACTAAGGCGCAACCCAGAACGATCGAAAAGATGGCTAATGCTCTTCGAACAAGTGATGAACGCTCATTCCATGCCAGAAATCACTGA
Protein sequenceShow/hide protein sequence
MDNALPTSGKCLSSVRSHGKCTSSEVNGLSSRTFGVRPKKMQSRMPQTQFFYLGVKSGPLTITLFCIGHKCFLFCISHNCFDLQDSYSKDFSLHSWHCPSHIFTKYRSRC
KLVGVRTKAQPRTIEKMANALRTSDERSFHARNH