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IVF0008805 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0008805
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr05:14287545..14287940
RNA-Seq ExpressionIVF0008805
SyntenyIVF0008805
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060795.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.23e-3272.92Show/hide
Query:  RGSKTGSKARHDCSGRVRVWDLGCGGMARLGFAGFDDRRSTCDGVAEQAASDAADFVAAAGGRTRAGGWNSARGGCGASGWATIWRSTCGGCRASG
        R SKT SKAR DC GRVRV D GCGG A+LGFAGFDDR STCDGVAE+AA + ADFVA   GRTR  GWNSA      SGWATIW STCGGC+ASG
Subjt:  RGSKTGSKARHDCSGRVRVWDLGCGGMARLGFAGFDDRRSTCDGVAEQAASDAADFVAAAGGRTRAGGWNSARGGCGASGWATIWRSTCGGCRASG
TrEMBL top hitse value%identityAlignment
A0A5A7V4I8 Ty3-gypsy retrotransposon protein1.7e-2772.92Show/hide
Query:  RGSKTGSKARHDCSGRVRVWDLGCGGMARLGFAGFDDRRSTCDGVAEQAASDAADFVAAAGGRTRAGGWNSARGGCGASGWATIWRSTCGGCRASG
        R SKT SKAR DC GRVRV D GCGG A+LGFAGFDDR STCDGVAE+AA + ADFVA   GRTR  GWNSA      SGWATIW STCGGC+ASG
Subjt:  RGSKTGSKARHDCSGRVRVWDLGCGGMARLGFAGFDDRRSTCDGVAEQAASDAADFVAAAGGRTRAGGWNSARGGCGASGWATIWRSTCGGCRASG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAGAGGCGCGGGTCAAAAACTGGGTCAAAGGCAAGGCACGACTGTTCGGGTCGAGTACGGGTGTGGGACTTGGGTTGCGGAGGCATGGCGCGGCTGGGCTTCGC
AGGCTTCGACGACCGACGCTCGACGTGCGACGGTGTGGCTGAGCAAGCGGCTAGCGATGCGGCTGATTTTGTGGCGGCAGCTGGCGGGAGAACTCGGGCGGGTGGCTGGA
ACTCAGCACGTGGTGGCTGCGGAGCGAGCGGCTGGGCGACGATCTGGCGCTCGACGTGCGGTGGCTGCAGAGCGAGCGGCTGGCGACAGTTGTGGCGGCGTGCGGCGGCT
AGGATTTCCTTCCCCCCTTTCTCTTTTTTTTCTCTTGTGCACGGGTTCCAAGGCTCATTTATATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAGAGGCGCGGGTCAAAAACTGGGTCAAAGGCAAGGCACGACTGTTCGGGTCGAGTACGGGTGTGGGACTTGGGTTGCGGAGGCATGGCGCGGCTGGGCTTCGC
AGGCTTCGACGACCGACGCTCGACGTGCGACGGTGTGGCTGAGCAAGCGGCTAGCGATGCGGCTGATTTTGTGGCGGCAGCTGGCGGGAGAACTCGGGCGGGTGGCTGGA
ACTCAGCACGTGGTGGCTGCGGAGCGAGCGGCTGGGCGACGATCTGGCGCTCGACGTGCGGTGGCTGCAGAGCGAGCGGCTGGCGACAGTTGTGGCGGCGTGCGGCGGCT
AGGATTTCCTTCCCCCCTTTCTCTTTTTTTTCTCTTGTGCACGGGTTCCAAGGCTCATTTATATAA
Protein sequenceShow/hide protein sequence
MEERRGSKTGSKARHDCSGRVRVWDLGCGGMARLGFAGFDDRRSTCDGVAEQAASDAADFVAAAGGRTRAGGWNSARGGCGASGWATIWRSTCGGCRASGWRQLWRRAAA
RISFPPFSFFSLVHGFQGSFI