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IVF0008825 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0008825
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionpentatricopeptide repeat-containing protein At1g10910, chloroplastic
Genome locationchr04:24970864..24972816
RNA-Seq ExpressionIVF0008825
SyntenyIVF0008825
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057187.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.57e-5598.97Show/hide
Query:  MELSLVGNGYHRHVLRTRLPTPYSVMASASHAVPSLKNNQSNSVAILPKEPQFLPGSSNSKLFNGAQKRHSKSYLERQSAIAQVKDCSELAPALARF
        MELSLVGNGYHRHVLRTRLPTPYSVMASASHAVPSLKNNQSNSVAILPKEPQFLPGSSNSKLFNGAQKRHSKSYLERQSAIAQVKDCSELAPALAR+
Subjt:  MELSLVGNGYHRHVLRTRLPTPYSVMASASHAVPSLKNNQSNSVAILPKEPQFLPGSSNSKLFNGAQKRHSKSYLERQSAIAQVKDCSELAPALARF

XP_004141206.1 pentatricopeptide repeat-containing protein At1g10910, chloroplastic isoform X1 [Cucumis sativus]3.25e-4891.75Show/hide
Query:  MELSLVGNGYHRHVLRTRLPTPYSVMASASHAVPSLKNNQSNSVAILPKEPQFLPGSSNSKLFNGAQKRHSKSYLERQSAIAQVKDCSELAPALARF
        MELSLV NGYHRHVLRTRLPTP SVMASASHAV ++KNNQSNSVAILPKEPQFLPGSSN+KL NGAQKRHSKSYLERQSAIAQVKDCSELAPALAR+
Subjt:  MELSLVGNGYHRHVLRTRLPTPYSVMASASHAVPSLKNNQSNSVAILPKEPQFLPGSSNSKLFNGAQKRHSKSYLERQSAIAQVKDCSELAPALARF

XP_008464969.1 PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic isoform X1 [Cucumis melo]1.63e-5398.97Show/hide
Query:  MELSLVGNGYHRHVLRTRLPTPYSVMASASHAVPSLKNNQSNSVAILPKEPQFLPGSSNSKLFNGAQKRHSKSYLERQSAIAQVKDCSELAPALARF
        MELSLVGNGYHRHVLRTRLPTPYSVMASASHAVPSLKNNQSNSVAILPKEPQFLPGSSNSKLFNGAQKRHSKSYLERQSAIAQVKDCSELAPALAR+
Subjt:  MELSLVGNGYHRHVLRTRLPTPYSVMASASHAVPSLKNNQSNSVAILPKEPQFLPGSSNSKLFNGAQKRHSKSYLERQSAIAQVKDCSELAPALARF

XP_031738873.1 pentatricopeptide repeat-containing protein At1g10910, chloroplastic isoform X2 [Cucumis sativus]3.21e-4891.75Show/hide
Query:  MELSLVGNGYHRHVLRTRLPTPYSVMASASHAVPSLKNNQSNSVAILPKEPQFLPGSSNSKLFNGAQKRHSKSYLERQSAIAQVKDCSELAPALARF
        MELSLV NGYHRHVLRTRLPTP SVMASASHAV ++KNNQSNSVAILPKEPQFLPGSSN+KL NGAQKRHSKSYLERQSAIAQVKDCSELAPALAR+
Subjt:  MELSLVGNGYHRHVLRTRLPTPYSVMASASHAVPSLKNNQSNSVAILPKEPQFLPGSSNSKLFNGAQKRHSKSYLERQSAIAQVKDCSELAPALARF

XP_031738874.1 pentatricopeptide repeat-containing protein At1g10910, chloroplastic isoform X3 [Cucumis sativus]3.00e-4891.75Show/hide
Query:  MELSLVGNGYHRHVLRTRLPTPYSVMASASHAVPSLKNNQSNSVAILPKEPQFLPGSSNSKLFNGAQKRHSKSYLERQSAIAQVKDCSELAPALARF
        MELSLV NGYHRHVLRTRLPTP SVMASASHAV ++KNNQSNSVAILPKEPQFLPGSSN+KL NGAQKRHSKSYLERQSAIAQVKDCSELAPALAR+
Subjt:  MELSLVGNGYHRHVLRTRLPTPYSVMASASHAVPSLKNNQSNSVAILPKEPQFLPGSSNSKLFNGAQKRHSKSYLERQSAIAQVKDCSELAPALARF

TrEMBL top hitse value%identityAlignment
A0A0A0LI66 Uncharacterized protein5.1e-7176.12Show/hide
Query:  MELSLVGNGYHRHVLRTRLPTPYSVMASASHAVPSLKNNQSNSVAILPKEPQFLPGSSNSKLFNGAQKRHSKSYLERQSAIAQVKDCSELAPALARFFFS
        MELSLV NGYHRHVLRTRLPTP SVMASASHAV ++KNNQSNSVAILPKEPQFLPGSSN+KL NGAQKRHSKSYLERQSAIAQVKDCSELAPALARFFFS
Subjt:  MELSLVGNGYHRHVLRTRLPTPYSVMASASHAVPSLKNNQSNSVAILPKEPQFLPGSSNSKLFNGAQKRHSKSYLERQSAIAQVKDCSELAPALARFFFS

Query:  YLFGMCFWILSCGKSLAQGRQSPRGSPSAILLTLYF----------TIS-FWKYRWHDCGILFRGLLILRLGTCTLDVILLITKFRNEYLCLLFCLLADF
        YLF  C WIL+CGKS AQG QSP G+PSAILLTL F          T+S F K      G++  GL+ILRLGTCTLDVILLI KF N YL    CLLADF
Subjt:  YLFGMCFWILSCGKSLAQGRQSPRGSPSAILLTLYF----------TIS-FWKYRWHDCGILFRGLLILRLGTCTLDVILLITKFRNEYLCLLFCLLADF

Query:  I
        +
Subjt:  I

A0A1S3CN74 pentatricopeptide repeat-containing protein At1g10910, chloroplastic isoform X14.8e-4598.97Show/hide
Query:  MELSLVGNGYHRHVLRTRLPTPYSVMASASHAVPSLKNNQSNSVAILPKEPQFLPGSSNSKLFNGAQKRHSKSYLERQSAIAQVKDCSELAPALARF
        MELSLVGNGYHRHVLRTRLPTPYSVMASASHAVPSLKNNQSNSVAILPKEPQFLPGSSNSKLFNGAQKRHSKSYLERQSAIAQVKDCSELAPALAR+
Subjt:  MELSLVGNGYHRHVLRTRLPTPYSVMASASHAVPSLKNNQSNSVAILPKEPQFLPGSSNSKLFNGAQKRHSKSYLERQSAIAQVKDCSELAPALARF

A0A5A7URC2 Pentatricopeptide repeat-containing protein4.8e-4598.97Show/hide
Query:  MELSLVGNGYHRHVLRTRLPTPYSVMASASHAVPSLKNNQSNSVAILPKEPQFLPGSSNSKLFNGAQKRHSKSYLERQSAIAQVKDCSELAPALARF
        MELSLVGNGYHRHVLRTRLPTPYSVMASASHAVPSLKNNQSNSVAILPKEPQFLPGSSNSKLFNGAQKRHSKSYLERQSAIAQVKDCSELAPALAR+
Subjt:  MELSLVGNGYHRHVLRTRLPTPYSVMASASHAVPSLKNNQSNSVAILPKEPQFLPGSSNSKLFNGAQKRHSKSYLERQSAIAQVKDCSELAPALARF

A0A6J1ERS3 pentatricopeptide repeat-containing protein At1g10910, chloroplastic1.6e-3579.38Show/hide
Query:  MELSLVGNGYHRHVLRTRLPTPYSVMASASHAVPSLKNNQSNSVAILPKEPQFLPGSSNSKLFNGAQKRHSKSYLERQSAIAQVKDCSELAPALARF
        MELS++GNGYHRH+L+TRLPTP SVMASA H+VP LKN++ NS+AILPK+PQFLP S N KL NG Q+RHSKSYLERQSAIAQVKDCSELAPALAR+
Subjt:  MELSLVGNGYHRHVLRTRLPTPYSVMASASHAVPSLKNNQSNSVAILPKEPQFLPGSSNSKLFNGAQKRHSKSYLERQSAIAQVKDCSELAPALARF

A0A6J1IWQ9 pentatricopeptide repeat-containing protein At1g10910, chloroplastic5.0e-3478.35Show/hide
Query:  MELSLVGNGYHRHVLRTRLPTPYSVMASASHAVPSLKNNQSNSVAILPKEPQFLPGSSNSKLFNGAQKRHSKSYLERQSAIAQVKDCSELAPALARF
        MELS++GNGYHRH+L+TRLPTP SVMASA H+VP LKN++ NS+AI+PK+PQFLP S N KL NG Q+RHSKSYLERQSAIAQVKDCSELAPALAR+
Subjt:  MELSLVGNGYHRHVLRTRLPTPYSVMASASHAVPSLKNNQSNSVAILPKEPQFLPGSSNSKLFNGAQKRHSKSYLERQSAIAQVKDCSELAPALARF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACTCTCCCTTGTTGGTAATGGTTATCACCGCCATGTCCTCCGGACTCGGTTGCCCACACCTTATTCTGTAATGGCTTCTGCGTCGCATGCTGTCCCTAGCCTCAA
GAACAATCAATCTAATTCTGTCGCAATTCTCCCTAAAGAGCCTCAATTCCTCCCCGGCTCTTCAAATTCTAAACTCTTCAATGGCGCCCAGAAGCGCCACTCCAAATCAT
ACCTTGAGAGACAGTCCGCTATTGCTCAAGTTAAAGATTGCTCCGAGTTGGCTCCGGCTCTTGCCAGGTTCTTCTTCTCTTACCTTTTTGGCATGTGTTTTTGGATTTTG
AGCTGTGGGAAATCACTTGCTCAAGGTCGTCAAAGTCCCCGTGGATCTCCATCTGCCATACTGCTGACCTTGTATTTCACTATCTCTTTTTGGAAATATCGATGGCATGA
TTGTGGTATTCTCTTTCGTGGCTTGCTGATTCTGAGACTTGGAACTTGCACTTTAGACGTAATTTTACTGATCACGAAATTCAGGAATGAGTATCTTTGTCTACTATTTT
GTCTTCTAGCTGATTTCATATGGTGCCTGATTCTTGGAGATGGACTATTGACTCCTCATCTATATTTATTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAACTCTCCCTTGTTGGTAATGGTTATCACCGCCATGTCCTCCGGACTCGGTTGCCCACACCTTATTCTGTAATGGCTTCTGCGTCGCATGCTGTCCCTAGCCTCAA
GAACAATCAATCTAATTCTGTCGCAATTCTCCCTAAAGAGCCTCAATTCCTCCCCGGCTCTTCAAATTCTAAACTCTTCAATGGCGCCCAGAAGCGCCACTCCAAATCAT
ACCTTGAGAGACAGTCCGCTATTGCTCAAGTTAAAGATTGCTCCGAGTTGGCTCCGGCTCTTGCCAGGTTCTTCTTCTCTTACCTTTTTGGCATGTGTTTTTGGATTTTG
AGCTGTGGGAAATCACTTGCTCAAGGTCGTCAAAGTCCCCGTGGATCTCCATCTGCCATACTGCTGACCTTGTATTTCACTATCTCTTTTTGGAAATATCGATGGCATGA
TTGTGGTATTCTCTTTCGTGGCTTGCTGATTCTGAGACTTGGAACTTGCACTTTAGACGTAATTTTACTGATCACGAAATTCAGGAATGAGTATCTTTGTCTACTATTTT
GTCTTCTAGCTGATTTCATATGGTGCCTGATTCTTGGAGATGGACTATTGACTCCTCATCTATATTTATTGTGA
Protein sequenceShow/hide protein sequence
MELSLVGNGYHRHVLRTRLPTPYSVMASASHAVPSLKNNQSNSVAILPKEPQFLPGSSNSKLFNGAQKRHSKSYLERQSAIAQVKDCSELAPALARFFFSYLFGMCFWIL
SCGKSLAQGRQSPRGSPSAILLTLYFTISFWKYRWHDCGILFRGLLILRLGTCTLDVILLITKFRNEYLCLLFCLLADFIWCLILGDGLLTPHLYLL