CuGenDBv2

Gene ID	IVF0008830
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	ribonuclease H2 subunit C
Genome location	chr12:16521499..16524933
RNA-Seq Expression	IVF0008830
Synteny	IVF0008830
Gene Ontology terms	GO:0006401 - RNA catabolic process (biological process) GO:0032299 - ribonuclease H2 complex (cellular component)
InterPro domains	IPR013924 - Ribonuclease H2, subunit C

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6583796.1 Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. sororia]

3.24e-93

78.57

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Query:  MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSK
        M+++N RK E  VDF  DFGSD  A+DLSGK+HQLPC +KFDGPC VS YFKPKSTGIEVDGL+VE AYFRGRKLQGATISLPEGYSGYV+G+KS GK K
Subjt:  MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSK

Query:  SSDQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS
        +S++  DSS WQVKAKF+NITYWNHDTLP+QDDTFQR+FHWLTVAQALHKPVTAEDLA+AS AL N+S
Subjt:  SSDQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS

XP_008459055.1 PREDICTED: uncharacterized protein C12B10.15c [Cucumis melo]

3.72e-122

100

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Query:  MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSK
        MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSK
Subjt:  MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSK

Query:  SSDQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS
        SSDQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS
Subjt:  SSDQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS

XP_011660323.1 uncharacterized protein C12B10.15c [Cucumis sativus]

2.97e-109

90.48

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Query:  MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSK
        MN QN RKGE  VDFDFDFG+DPKALD+SGK+HQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLN+EEAYFRGRKLQGATISLPEGYSGYVLGKKS    K
Subjt:  MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSK

Query:  SSDQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS
        +S+QCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASAS AL NLS
Subjt:  SSDQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS

XP_022927160.1 uncharacterized protein C12B10.15c [Cucurbita moschata]

2.66e-92

77.98

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Query:  MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSK
        M+++  RK E  VDF  DFGSD  A+DLSGK+HQLPC +KFDGPC VS YFKPKSTGIEVDGL+VE AYFRGRKLQGATISLPEGYSGYV+G+KS GK K
Subjt:  MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSK

Query:  SSDQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS
        +S++  DSS WQVKAKF+NITYWNHDTLP+QDDTFQR+FHWLTVAQALHKPVTAEDLA+AS AL N+S
Subjt:  SSDQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS

XP_038893586.1 uncharacterized protein C12B10.15c [Benincasa hispida]

2.13e-98

84.52

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Query:  MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSK
        MNA+N RKGE  VDFDF+  SD  ALDLSGK+HQLPC IKFDGPC VS YFKPKSTGIE DGL+VEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGK K
Subjt:  MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSK

Query:  SSDQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS
        +S+Q  +SSPWQVKAKF NITYWNHDTLPSQDDTFQR+FHWLTVAQALHKPVTAEDLASAS AL N+S
Subjt:  SSDQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0M1A2 Uncharacterized protein

7.3e-84

90.48

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Query:  MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSK
        MN QN RKGE  VDFDFDFG+DPKALD+SGK+HQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLN+EEAYFRGRKLQGATISLPEGYSGYVLGK    KSK
Subjt:  MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSK

Query:  SSDQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS
        +S+QCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASAS AL NLS
Subjt:  SSDQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS

A0A1S3C9A8 uncharacterized protein C12B10.15c

1.7e-93

100

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Query:  MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSK
        MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSK
Subjt:  MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSK

Query:  SSDQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS
        SSDQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS
Subjt:  SSDQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS

A0A5A7TIT8 Ribonuclease H2 subunit C isoform X2

1.7e-93

100

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Query:  MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSK
        MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSK
Subjt:  MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSK

Query:  SSDQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS
        SSDQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS
Subjt:  SSDQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS

A0A6J1EN41 uncharacterized protein C12B10.15c

1.2e-70

77.98

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Query:  MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSK
        M+++  RK E  V  DFDFGSD  A+DLSGK+HQLPC +KFDGPC VS YFKPKSTGIEVDGL+VE AYFRGRKLQGATISLPEGYSGYV+G+KS GK K
Subjt:  MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSK

Query:  SSDQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS
        +S++  DSS WQVKAKF+NITYWNHDTLP+QDDTFQR+FHWLTVAQALHKPVTAEDLA+AS AL N+S
Subjt:  SSDQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS

A0A6J1KH29 uncharacterized protein C12B10.15c

1.7e-69

76.79

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Query:  MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSK
        M+++  RK E  V  DFDFGSD  A+DLSGK+HQLPC +KFDGPC VS YFKPKSTGIEVDGL+V+ AYFRGRKLQGATISLPEGY GYV+G+KSL K K
Subjt:  MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSK

Query:  SSDQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS
        +S++  DSS WQVKAKF+NITYWNHDTLP+QDDTFQR+FHWLTVAQALHKPVTAEDLA AS AL N+S
Subjt:  SSDQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS

SwissProt top hits

e value

%identity

Alignment

Q10448 Uncharacterized protein C12B10.15c

2.0e-09

33.05

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Query:  KIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSG-YVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNITYWNHDTL-
        K   LPC I +DGP PV  YF  K   I  +  +      RGR+L G  + LPE Y+G  VL    L   ++S++    S W + + F+ +  WN D + 
Subjt:  KIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSG-YVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNITYWNHDTL-

Query:  PSQDDTFQR-TFHWLTVA
         S+ D ++R    W+  A
Subjt:  PSQDDTFQR-TFHWLTVA

Q8TDP1 Ribonuclease H2 subunit C

8.8e-10

31.65

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Query:  IHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVL----GKKSLGK------SKSSDQCDDSSPWQ--------V
        +H LPC +  DGP PV  +F P        G    E  FRGR L+G  +++P G  GYV+     K S+GK      S + DQ  +  P +         
Subjt:  IHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVL----GKKSLGK------SKSSDQCDDSSPWQ--------V

Query:  KAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPV
         A F   T W  +T+P  D   +    W ++A A+H  V
Subjt:  KAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPV

Arabidopsis top hits

e value

%identity

Alignment

AT2G39440.1 CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

6.1e-51

60.93

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Query:  DFDFGSDPKAL-DLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKS----LGKSKSSDQCDDSSP
        DF   +D  ++ DLS ++HQLPC I+FDGP  VSHYFKPKS+ +E+DG+  EEA+FRGRKLQGATISLP GYSG+VL + S     GK K+S   +D+  
Subjt:  DFDFGSDPKAL-DLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKS----LGKSKSSDQCDDSSP

Query:  WQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASAS
        W+VKAKF+N+TYWNHD+LPS+DDTF R+FHW ++A+ALHKPV  EDL + S
Subjt:  WQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASAS

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAATGCTCAAAACGGGAGGAAAGGGGAAGCAACCGTCGATTTTGATTTTGATTTTGGGAGTGACCCTAAAGCTTTAGATCTCAGTGGTAAAATCCATCAGCTTCCCTG
TACCATCAAATTCGATGGTCCTTGCCCTGTTTCTCATTATTTTAAACCCAAATCCACTGGAATTGAGGTTGATGGTTTGAATGTCGAGGAAGCTTATTTTAGAGGAAGAA
AGTTGCAAGGAGCTACCATTTCCCTTCCGGAGGGTTACTCAGGCTATGTGCTAGGGAAGAAGAGTCTTGGAAAGAGTAAATCTTCGGATCAGTGTGATGACTCAAGCCCT
TGGCAGGTGAAGGCCAAATTTGATAACATTACATATTGGAACCATGACACCCTGCCGTCACAAGATGATACGTTCCAACGTACTTTCCACTGGCTGACCGTTGCACAAGC
ATTGCACAAACCTGTAACAGCAGAAGATTTGGCATCTGCATCTGCTGCTCTCAACAACTTGAGTTGA

mRNA sequence

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AAAATGGTAAAGAAGAAGAGAAAAAAAAAAAAAAAAACCAATTTGGAGCGGGAAAGTGTTGGTCGACGATCGATTCTCATTTCTCAGTGTTCAAAAGAGCGGGAAACATA
GAATCTGAATGACAATACAAACGGTCGATTGAATTTCCTTCTCAGAAATCCCAAGCACCAACGTCGGTTTGTTTAGGGTTTTTCACTTTTAGATTTGCTTTACAATCAAT
CAAATGAATGCTCAAAACGGGAGGAAAGGGGAAGCAACCGTCGATTTTGATTTTGATTTTGGGAGTGACCCTAAAGCTTTAGATCTCAGTGGTAAAATCCATCAGCTTCC
CTGTACCATCAAATTCGATGGTCCTTGCCCTGTTTCTCATTATTTTAAACCCAAATCCACTGGAATTGAGGTTGATGGTTTGAATGTCGAGGAAGCTTATTTTAGAGGAA
GAAAGTTGCAAGGAGCTACCATTTCCCTTCCGGAGGGTTACTCAGGCTATGTGCTAGGGAAGAAGAGTCTTGGAAAGAGTAAATCTTCGGATCAGTGTGATGACTCAAGC
CCTTGGCAGGTGAAGGCCAAATTTGATAACATTACATATTGGAACCATGACACCCTGCCGTCACAAGATGATACGTTCCAACGTACTTTCCACTGGCTGACCGTTGCACA
AGCATTGCACAAACCTGTAACAGCAGAAGATTTGGCATCTGCATCTGCTGCTCTCAACAACTTGAGTTGATTAGGTTTAGGATCACAATGTGTTCTGAGAAGAAAACTTC
AATAGACTTAGAATGGTTCCATTCTACTTCGATTTGTATTTGGTCATATTATTATCTACCTTACCAATTTATTCAATGGGTTTGGCTTGGCATTTTAAACCATGATGTCA
CCCAAAGACTTTTTTTTTTTTTTTTTTCAATTTCATACTGTTGTAGTAATACTATAAACATGATTTACATTGGAAGTCTTTCCCG

Protein sequence

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MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCDDSSP
WQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS

IVF0008830 (gene) of Melon (IVF77) v1 genome