CuGenDBv2

Gene ID	IVF0008833
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	photosystem II repair protein PSB27-H1, chloroplastic
Genome location	chr01:2543100..2543933
RNA-Seq Expression	IVF0008833
Synteny	IVF0008833
Gene Ontology terms	GO:0010206 - photosystem II repair (biological process) GO:0010207 - photosystem II assembly (biological process) GO:0071484 - cellular response to light intensity (biological process) GO:0009523 - photosystem II (cellular component) GO:0009543 - chloroplast thylakoid lumen (cellular component)
InterPro domains	IPR025585 - Photosystem II Pbs27 IPR038450 - Photosystem II Pbs27 superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6572353.1 Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

4.28e-93

85.55

Show/hide

Query:  MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTV----RRRDFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAA
        MASPTLITP TSKSQ   IPLKPKS+I+AA TT T     RRR+FLSL+ASVLAPS+VLFP +PALA+SD+EYVKDT EVIGKVRTTITMD+NDPNVAAA
Subjt:  MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTV----RRRDFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAA

Query:  VADLRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        VA+LRESSNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  VADLRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_004136817.1 photosystem II repair protein PSB27-H1, chloroplastic [Cucumis sativus]

1.29e-109

98.22

Show/hide

Query:  MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADL
        MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRR+FLSL+ASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADL
Subjt:  MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADL

Query:  RESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        RESSN WVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  RESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_008455335.1 PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Cucumis melo]

1.34e-111

100

Show/hide

Query:  MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADL
        MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADL
Subjt:  MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADL

Query:  RESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        RESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  RESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_022952622.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata]

2.05e-93

86.63

Show/hide

Query:  MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPT---VRRRDFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAV
        MASPTLITP TSKSQ   IPLKPKS+ISAA TT T    RRR+FLSL+ASVLAPS+VLFP +PALA+SD+EYVKDT EVIGKVRTTITMD+NDPNVAAAV
Subjt:  MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPT---VRRRDFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAV

Query:  ADLRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        A+LRESSNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  ADLRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_038887363.1 photosystem II repair protein PSB27-H1, chloroplastic [Benincasa hispida]

1.14e-103

93.49

Show/hide

Query:  MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADL
        MASPTLITPCTSKSQ+PFIPLKPKSTISAA T  TVRRRDFLSL+ASVLAPS+VLFPQSPALA+SDDEYVKDT+EVIGKVR TITMDRNDPNVAAAVA+L
Subjt:  MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADL

Query:  RESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        RESSN WVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  RESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K1S2 Uncharacterized protein

6.2e-83

98.22

Show/hide

Query:  MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADL
        MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRR+FLSL+ASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADL
Subjt:  MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADL

Query:  RESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        RESSN WVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  RESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A1S3C1X2 photosystem II repair protein PSB27-H1, chloroplastic

1.9e-84

100

Show/hide

Query:  MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADL
        MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADL
Subjt:  MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADL

Query:  RESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        RESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  RESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A5A7SR30 Photosystem II repair protein PSB27-H1

1.9e-84

100

Show/hide

Query:  MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADL
        MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADL
Subjt:  MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADL

Query:  RESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        RESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  RESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A6J1GKW7 photosystem II repair protein PSB27-H1, chloroplastic-like

1.2e-70

86.63

Show/hide

Query:  MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPT---VRRRDFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAV
        MASPTLITP TSKSQ   IPLKPKS+ISAA TT T    RRR+FLSL+ASVLAPS+VLFP +PALA+SD+EYVKDT EVIGKVRTTITMD+NDPNVAAAV
Subjt:  MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPT---VRRRDFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAV

Query:  ADLRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        A+LRESSNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  ADLRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A6J1HZH1 photosystem II repair protein PSB27-H1, chloroplastic-like

1.2e-70

86.63

Show/hide

Query:  MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPT---VRRRDFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAV
        MASPTLITP TSKSQ   IPLKPKS+ISAA TT T    RRR+FLSL+ASVLAPS+VLFP +PALA+SD+EYVKDT EVIGKVRTTITMD+NDPNVAAAV
Subjt:  MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPT---VRRRDFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAV

Query:  ADLRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        A+LRESSNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  ADLRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

SwissProt top hits

e value

%identity

Alignment

Q9LR64 Photosystem II repair protein PSB27-H1, chloroplastic

3.1e-47

60.92

Show/hide

Query:  MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPT---VRRRDFLSLSA--SVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAA
        MAS +        +  P  P    S++S  +  P    + RRDFLSL+A  ++L  S      +P  AA D+EY+KDT+ VI KVR+T++M + DPNVA 
Subjt:  MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPT---VRRRDFLSLSA--SVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAA

Query:  AVADLRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AVA+LRE+SNSWVAKYRKEKALLG+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Subjt:  AVADLRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

Q9ZVZ9 Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

2.2e-05

27.55

Show/hide

Query:  YVKDTNEVIGKVRTTITMDRNDPNVAAAVAD-LRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL
        Y+K   EV+  +R ++  +  D       AD  +ES   +++ +R +K + G  S+ ++ + + A++  Y   GP+AP+P + K  IL++++ AE+ L
Subjt:  YVKDTNEVIGKVRTTITMDRNDPNVAAAVAD-LRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL

Arabidopsis top hits

e value

%identity

Alignment

AT1G03600.1 photosystem II family protein

2.2e-48

60.92

Show/hide

Query:  MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPT---VRRRDFLSLSA--SVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAA
        MAS +        +  P  P    S++S  +  P    + RRDFLSL+A  ++L  S      +P  AA D+EY+KDT+ VI KVR+T++M + DPNVA 
Subjt:  MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPT---VRRRDFLSLSA--SVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAA

Query:  AVADLRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AVA+LRE+SNSWVAKYRKEKALLG+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Subjt:  AVADLRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

AT1G05385.1 photosystem II 11 kDa protein-related

1.6e-06

27.55

Show/hide

Query:  YVKDTNEVIGKVRTTITMDRNDPNVAAAVAD-LRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL
        Y+K   EV+  +R ++  +  D       AD  +ES   +++ +R +K + G  S+ ++ + + A++  Y   GP+AP+P + K  IL++++ AE+ L
Subjt:  YVKDTNEVIGKVRTTITMDRNDPNVAAAVAD-LRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCCTCCCCAACACTCATAACCCCTTGTACTTCCAAATCTCAGAGCCCCTTCATACCTCTCAAACCCAAATCCACCATTTCCGCCGCCGTAACAACCCCCACCGTCCG
CCGCCGCGATTTCCTTTCTTTGTCCGCATCTGTTCTAGCGCCGTCGTTTGTTCTGTTCCCTCAATCTCCGGCACTGGCGGCTTCGGACGACGAGTACGTGAAGGATACCA
ATGAGGTGATTGGTAAGGTGAGAACGACGATCACAATGGACCGAAATGACCCGAATGTGGCAGCAGCGGTGGCGGATCTTCGAGAAAGTTCCAATTCTTGGGTGGCTAAG
TATAGGAAGGAGAAAGCTCTATTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCATTGAATGCTGTGTCGGGGCATTATATTAGCTTTGGACCGACGGCGCCGATACC
GGCAAAGAGGAAGGCAAGGATTTTGGAAGAGATGGACACTGCGGAGAAAGCTCTGTTAAGAGGGAGATGA

mRNA sequence

Show/hide mRNA sequence

AAATAAGATAAGATGATAAGCACACGTGGCAATCACCCAATTCCCCAAAATGTTTCTAACTAAAAATTCCATCTTCACGTTTCATTTCCCCTTCTCCCCTTCCAAAACTC
CAATTTCCCCAAAATCATGGCCTCCCCAACACTCATAACCCCTTGTACTTCCAAATCTCAGAGCCCCTTCATACCTCTCAAACCCAAATCCACCATTTCCGCCGCCGTAA
CAACCCCCACCGTCCGCCGCCGCGATTTCCTTTCTTTGTCCGCATCTGTTCTAGCGCCGTCGTTTGTTCTGTTCCCTCAATCTCCGGCACTGGCGGCTTCGGACGACGAG
TACGTGAAGGATACCAATGAGGTGATTGGTAAGGTGAGAACGACGATCACAATGGACCGAAATGACCCGAATGTGGCAGCAGCGGTGGCGGATCTTCGAGAAAGTTCCAA
TTCTTGGGTGGCTAAGTATAGGAAGGAGAAAGCTCTATTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCATTGAATGCTGTGTCGGGGCATTATATTAGCTTTGGAC
CGACGGCGCCGATACCGGCAAAGAGGAAGGCAAGGATTTTGGAAGAGATGGACACTGCGGAGAAAGCTCTGTTAAGAGGGAGATGAAAAATTTATGTGAGGCTTTTTCAT
TCTTTTTCTCTTTGTAATTTTTATTTATTTTTGCATTGGAGTTTAACGTTTATGGGTTATGTAAGTATAGAATTTGGGGATTCACAATTTGTGAGTTTACAAGAGGAAAA
TATTCTAAATTTCGGTCACAAATTTTCCAATCTTCATAAATTAGGAAAGGCTTAGTTTGCTTAG

Protein sequence

Show/hide protein sequence

MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAK
YRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

IVF0008833 (gene) of Melon (IVF77) v1 genome