; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0008849 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0008849
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionCST complex subunit STN1
Genome locationchr05:4021427..4022370
RNA-Seq ExpressionIVF0008849
SyntenyIVF0008849
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003697 - single-stranded DNA binding (molecular function)
InterPro domainsIPR004365 - OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
IPR012340 - Nucleic acid-binding, OB-fold
IPR040260 - Replication factor A protein-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057432.1 CST complex subunit STN1 [Cucumis melo var. makuwa]1.20e-118100Show/hide
Query:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRIL
        MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRIL
Subjt:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRIL

Query:  ADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT
        ADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT
Subjt:  ADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT

KAG7011223.1 CST complex subunit STN1, partial [Cucurbita argyrosperma subsp. argyrosperma]5.51e-9581.29Show/hide
Query:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSS----DSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPD
        MNQ++  +FSLY TH+KLLGFDLNSL Q+SSS    D+VSFSR+GYAVSC EIVGVVVFRDLKPNRFL+FSVDDGT CV CILWLNHLTS YFA RH PD
Subjt:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSS----DSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPD

Query:  VRILADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIP
        VRI+ +MATHFAAQIRVGIV RVRGK+SSYRG+VQITVSDVVVE+DPNAEILHWLD MRLA+KCYDLSP P
Subjt:  VRILADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIP

XP_004145384.1 CST complex subunit STN1 [Cucumis sativus]1.29e-11396.43Show/hide
Query:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRIL
        MNQR+RFSFSLYQTHVKLL FDLNSLNQ SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHH DVRIL
Subjt:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRIL

Query:  ADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT
         DMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSP PT
Subjt:  ADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT

XP_008449339.1 PREDICTED: CST complex subunit STN1 [Cucumis melo]6.94e-118100Show/hide
Query:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRIL
        MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRIL
Subjt:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRIL

Query:  ADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT
        ADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT
Subjt:  ADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT

XP_023553655.1 CST complex subunit STN1 [Cucurbita pepo subsp. pepo]1.31e-9581.76Show/hide
Query:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSS---DSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDV
        MNQ++  +FSLY TH+KLLGFDLNSL Q+SSS   D+VSFSR+GYAVSC E+VGVVVFRDLKPNRFL+FSVDDGT CV CILWLNHLTS YFASRH PDV
Subjt:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSS---DSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDV

Query:  RILADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIP
        RI+ +MATHFAAQIRVGIV RVRGK+SSYRG+VQITVSDVVVE+DPNAEILHWLD MRLA+KCYDLSP P
Subjt:  RILADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIP

TrEMBL top hitse value%identityAlignment
A0A0A0LNV0 OB domain-containing protein9.2e-8796.43Show/hide
Query:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRIL
        MNQR+RFSFSLYQTHVKLL FDLNSLNQ SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHH DVRIL
Subjt:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRIL

Query:  ADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT
         DMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSP PT
Subjt:  ADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT

A0A1S3BLT5 CST complex subunit STN11.4e-90100Show/hide
Query:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRIL
        MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRIL
Subjt:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRIL

Query:  ADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT
        ADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT
Subjt:  ADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT

A0A5D3E3H2 CST complex subunit STN11.4e-90100Show/hide
Query:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRIL
        MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRIL
Subjt:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRIL

Query:  ADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT
        ADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT
Subjt:  ADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT

A0A6J1HFA9 LOW QUALITY PROTEIN: CST complex subunit STN19.9e-7381.18Show/hide
Query:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQ---NSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDV
        MNQ++  +FSLY TH+KLLGFDLNSL Q   +SSSD+VSFSR+GYAVSC EIVGVVVFRDLKPNRFL+FSVDDGT CV CILWLNHLTS YFASRH PDV
Subjt:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQ---NSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDV

Query:  RILADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIP
        RI+ +MATHFAAQIRVGIV RVRG++SSYRG+VQ+TVSDVVVE+DPNAEILHWLD MRLA+KCYDLSP P
Subjt:  RILADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIP

A0A6J1HUX0 CST complex subunit STN11.7e-6480.89Show/hide
Query:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQ---NSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDV
        MNQ++  +FSLY TH+KLLGFDLNSL Q   +SSSD+VSFSR+G+AVSC EIVGVVV RDLKPNRFL+FSVDDGT CV CILWLNHLTS YFASRH PDV
Subjt:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQ---NSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDV

Query:  RILADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSM
        RI+ +MATHFAAQIRVGIV RVRGK+SSYRG+VQITVSDVVVE+DPNAEILHWLD M
Subjt:  RILADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSM

SwissProt top hitse value%identityAlignment
Q08DB2 CST complex subunit STN13.4e-0626.83Show/hide
Query:  LYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILW--LNHLTSSYFASRHHPDVRILA-------
        ++    KL   D+  L ++     V F   G+ +   +I+G V+    K + F  + VDD T  + CI W  LN+  SS  ++   P  R L+       
Subjt:  LYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILW--LNHLTSSYFASRHHPDVRILA-------

Query:  -DMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDP--NAEILHWLDSMRLAMKCYD
                A++ +G ++RVRG +  +RG  +I  +     DDP  N +I   L+   +  K YD
Subjt:  -DMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDP--NAEILHWLDSMRLAMKCYD

Q9LMK5 CST complex subunit STN11.3e-3754.9Show/hide
Query:  SLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYA-VSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFA
        SL  TH KL+  D+  L Q S ++S SFS  G A VS  EIVG +V RDL P +FLKF VDDGT CV C++WLN LTSSYF+      + +LA  A   A
Subjt:  SLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYA-VSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFA

Query:  AQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCY
        AQIR+G V RVRG++ SYRG++QIT +  V E DPNAEILHWL+ ++L   CY
Subjt:  AQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCY

Arabidopsis top hitse value%identityAlignment
AT1G07130.1 Nucleic acid-binding, OB-fold-like protein9.2e-3954.9Show/hide
Query:  SLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYA-VSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFA
        SL  TH KL+  D+  L Q S ++S SFS  G A VS  EIVG +V RDL P +FLKF VDDGT CV C++WLN LTSSYF+      + +LA  A   A
Subjt:  SLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYA-VSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFA

Query:  AQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCY
        AQIR+G V RVRG++ SYRG++QIT +  V E DPNAEILHWL+ ++L   CY
Subjt:  AQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCY

AT2G24490.1 replicon protein A25.6e-0424.39Show/hide
Query:  SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVRGKLSSYRGM
        SS +       G +++   +VG+V  +D      ++F++DDGT  + C  W+    S  F +R                  +R G  VR+ G L +++G 
Subjt:  SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVRGKLSSYRGM

Query:  VQITVSDVVVEDDPNAEILHWLD
         Q+ V  V    D N    H+++
Subjt:  VQITVSDVVVEDDPNAEILHWLD

AT2G24490.2 replicon protein A25.6e-0424.39Show/hide
Query:  SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVRGKLSSYRGM
        SS +       G +++   +VG+V  +D      ++F++DDGT  + C  W+    S  F +R                  +R G  VR+ G L +++G 
Subjt:  SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVRGKLSSYRGM

Query:  VQITVSDVVVEDDPNAEILHWLD
         Q+ V  V    D N    H+++
Subjt:  VQITVSDVVVEDDPNAEILHWLD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACCAACGGCAACGTTTCTCGTTCTCCCTCTACCAAACCCATGTCAAGCTTCTTGGTTTCGACCTAAATTCCCTCAACCAAAATTCCTCTTCTGATTCAGTTTCTTT
CTCTCGCAAAGGCTATGCCGTTTCCTGTACAGAGATCGTCGGCGTTGTGGTCTTCCGTGACCTGAAGCCTAACAGGTTTCTCAAATTCTCCGTTGACGATGGTACTGCAT
GTGTTGGTTGTATCCTGTGGCTAAATCATCTCACATCGTCTTATTTTGCTTCACGCCATCACCCAGATGTTCGAATTCTGGCAGATATGGCGACCCATTTCGCAGCCCAA
ATTAGGGTTGGGATTGTTGTTAGGGTTCGAGGGAAATTGAGCAGCTATAGGGGAATGGTGCAGATTACAGTGTCAGATGTTGTGGTTGAAGACGACCCAAATGCTGAAAT
TCTGCATTGGTTGGATTCTATGAGGTTGGCTATGAAGTGTTATGACCTCTCCCCTATACCCACTTAG
mRNA sequenceShow/hide mRNA sequence
GTTGGGACTTAGGAATAGAGTAAAGTAAGATGCGGTGGCCCCTAAAGACATTGACTTCTTTTGTCAGATGTCTCTTCTTTTTCGTAGCCCTTTCTCAATCTTCTTAATGG
GCCTATTTATGAACTTCAATTGGGCTCTCATTGATCTACAAAAAAAAAGCCCATTGGGCTAAAAATTTAACTCAACCACAACCGGAGAAACTACACATTAGGTTTCCGAT
GAACCAACGGCAACGTTTCTCGTTCTCCCTCTACCAAACCCATGTCAAGCTTCTTGGTTTCGACCTAAATTCCCTCAACCAAAATTCCTCTTCTGATTCAGTTTCTTTCT
CTCGCAAAGGCTATGCCGTTTCCTGTACAGAGATCGTCGGCGTTGTGGTCTTCCGTGACCTGAAGCCTAACAGGTTTCTCAAATTCTCCGTTGACGATGGTACTGCATGT
GTTGGTTGTATCCTGTGGCTAAATCATCTCACATCGTCTTATTTTGCTTCACGCCATCACCCAGATGTTCGAATTCTGGCAGATATGGCGACCCATTTCGCAGCCCAAAT
TAGGGTTGGGATTGTTGTTAGGGTTCGAGGGAAATTGAGCAGCTATAGGGGAATGGTGCAGATTACAGTGTCAGATGTTGTGGTTGAAGACGACCCAAATGCTGAAATTC
TGCATTGGTTGGATTCTATGAGGTTGGCTATGAAGTGTTATGACCTCTCCCCTATACCCACTTAGCTGTAGATTCCAATGGCTTTAAAATGCTATCTCTCGTTTTCTGAT
CTCCCTTTTTTCTTTTTCCTTTCTGAAATGCTGAAAAGATTCCACTTTTTGTTGTTTACTGTACATAATTTTGCTCAACAGCTTGGCCTTCGAAATGATTGTTTAATAAT
ATTGAAATTAAGTTGCTACTACCGACTCTGTTTACTGTTTAGTTTGATGAGAATTGGTAATGTT
Protein sequenceShow/hide protein sequence
MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQ
IRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT