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IVF0008874 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0008874
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr12:15440519..15440809
RNA-Seq ExpressionIVF0008874
SyntenyIVF0008874
Gene Ontology termsNA
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056742.1 uncharacterized protein E6C27_scaffold486G00140 [Cucumis melo var. makuwa]2.51e-2066.67Show/hide
Query:  MVETKPILRPPSYEIPENSSSTTNP--TPPSFIAMYENPYYLHHSDSTNLVLVYDLLTESNYTSWN
        M ++ P L+ PS  I ENSSST NP  TPPS + +YENPYYLHHSD+TNL+LV D+LTES+YTSWN
Subjt:  MVETKPILRPPSYEIPENSSSTTNP--TPPSFIAMYENPYYLHHSDSTNLVLVYDLLTESNYTSWN

KAA0065335.1 uncharacterized protein E6C27_scaffold301G00020 [Cucumis melo var. makuwa]1.83e-3171.08Show/hide
Query:  MVETKPILRPPSYEIPENSSSTTNPTPP--SFIAMYENPYYLHHSDSTNLVLVYDLLTESNYTSWNQAFTLGLTIKNKLCFID
        M  T P L P S   PE SSSTTNPTP   S IAMYENPYYLH   STNL+LV++LLTESNYTSWN+AF LGLTIK K+CFID
Subjt:  MVETKPILRPPSYEIPENSSSTTNPTPP--SFIAMYENPYYLHHSDSTNLVLVYDLLTESNYTSWNQAFTLGLTIKNKLCFID

KAA0066235.1 uncharacterized protein E6C27_scaffold21G002610 [Cucumis melo var. makuwa]1.67e-1970.31Show/hide
Query:  MVETKPILRPPSYEIPENSSSTTN--PTPPSFIAMYENPYYLHHSDSTNLVLVYDLLTESNYTS
        M ET P L+  S   PE SSSTTN  PTPPS IAMYEN YYLHHSDS NL+L+ DLL ESNYTS
Subjt:  MVETKPILRPPSYEIPENSSSTTN--PTPPSFIAMYENPYYLHHSDSTNLVLVYDLLTESNYTS

TYJ96600.1 uncharacterized protein E5676_scaffold464G00020 [Cucumis melo var. makuwa]7.13e-2968.67Show/hide
Query:  MVETKPILRPPSYEIPENSSSTTNPTPP--SFIAMYENPYYLHHSDSTNLVLVYDLLTESNYTSWNQAFTLGLTIKNKLCFID
        M  T P L P S   PE SSST NPTP   S IAMYENPYYLH   STNL+LV++LLTESNYTSWN+AF LGLTIK K+ FID
Subjt:  MVETKPILRPPSYEIPENSSSTTNPTPP--SFIAMYENPYYLHHSDSTNLVLVYDLLTESNYTSWNQAFTLGLTIKNKLCFID

TYK04347.1 uncharacterized protein E5676_scaffold675G00100 [Cucumis melo var. makuwa]6.09e-2867.47Show/hide
Query:  MVETKPILRPPSYEIPENSSSTTNPTP--PSFIAMYENPYYLHHSDSTNLVLVYDLLTESNYTSWNQAFTLGLTIKNKLCFID
        M E+ P L+P S  IPENSSS  NPTP  PS IA+YEN  YLHHS++TNL+LV DLL ESNYTSWN AF LGLT+K K+ FID
Subjt:  MVETKPILRPPSYEIPENSSSTTNPTP--PSFIAMYENPYYLHHSDSTNLVLVYDLLTESNYTSWNQAFTLGLTIKNKLCFID

TrEMBL top hitse value%identityAlignment
A0A5A7ULN0 Uncharacterized protein1.0e-1366.67Show/hide
Query:  MVETKPILRPPSYEIPENSSSTTN--PTPPSFIAMYENPYYLHHSDSTNLVLVYDLLTESNYTSWN
        M ++ P L+P S  I ENSSST N  PTPPS + +YENPYYLHHSD+TNL+LV D+LTES+YTSWN
Subjt:  MVETKPILRPPSYEIPENSSSTTN--PTPPSFIAMYENPYYLHHSDSTNLVLVYDLLTESNYTSWN

A0A5A7VHR8 Retrotran_gag_3 domain-containing protein1.6e-2271.08Show/hide
Query:  MVETKPILRPPSYEIPENSSSTTN--PTPPSFIAMYENPYYLHHSDSTNLVLVYDLLTESNYTSWNQAFTLGLTIKNKLCFID
        M  T P L P S   PE SSSTTN  PTP S IAMYENPYYLH   STNL+LV++LLTESNYTSWN+AF LGLTIK K+CFID
Subjt:  MVETKPILRPPSYEIPENSSSTTN--PTPPSFIAMYENPYYLHHSDSTNLVLVYDLLTESNYTSWNQAFTLGLTIKNKLCFID

A0A5A7VKF4 Uncharacterized protein2.9e-1370.31Show/hide
Query:  MVETKPILRPPSYEIPENSSSTTN--PTPPSFIAMYENPYYLHHSDSTNLVLVYDLLTESNYTS
        M ET P L+  S   PE SSSTTN  PTPPS IAMYEN YYLHHSDS NL+L+ DLL ESNYTS
Subjt:  MVETKPILRPPSYEIPENSSSTTN--PTPPSFIAMYENPYYLHHSDSTNLVLVYDLLTESNYTS

A0A5D3B9Q7 Retrotran_gag_3 domain-containing protein1.5e-2068.67Show/hide
Query:  MVETKPILRPPSYEIPENSSSTTN--PTPPSFIAMYENPYYLHHSDSTNLVLVYDLLTESNYTSWNQAFTLGLTIKNKLCFID
        M  T P L P S   PE SSST N  PTP S IAMYENPYYLH   STNL+LV++LLTESNYTSWN+AF LGLTIK K+ FID
Subjt:  MVETKPILRPPSYEIPENSSSTTN--PTPPSFIAMYENPYYLHHSDSTNLVLVYDLLTESNYTSWNQAFTLGLTIKNKLCFID

A0A5D3BXU2 Retrotran_gag_3 domain-containing protein3.2e-2067.47Show/hide
Query:  MVETKPILRPPSYEIPENSSSTTN--PTPPSFIAMYENPYYLHHSDSTNLVLVYDLLTESNYTSWNQAFTLGLTIKNKLCFID
        M E+ P L+P S  IPENSSS  N  PTPPS IA+YEN  YLHHS++TNL+LV DLL ESNYTSWN AF LGLT+K K+ FID
Subjt:  MVETKPILRPPSYEIPENSSSTTN--PTPPSFIAMYENPYYLHHSDSTNLVLVYDLLTESNYTSWNQAFTLGLTIKNKLCFID

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGAGACAAAACCCATTCTTCGACCTCCTTCTTATGAAATTCCAGAAAACTCATCCTCAACCACTAACCCAACACCCCCTTCCTTCATAGCAATGTATGAAAACCC
ATACTACCTTCATCATTCAGATAGTACAAACTTAGTATTGGTTTATGATCTTCTTACAGAATCCAATTATACCTCTTGGAACCAAGCATTCACCCTCGGCCTTACTATCA
AGAACAAACTCTGCTTCATTGATGGTGTTGGGTTTTATGTCCTGAAACTCGTAGATAGTAAATATAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGAGACAAAACCCATTCTTCGACCTCCTTCTTATGAAATTCCAGAAAACTCATCCTCAACCACTAACCCAACACCCCCTTCCTTCATAGCAATGTATGAAAACCC
ATACTACCTTCATCATTCAGATAGTACAAACTTAGTATTGGTTTATGATCTTCTTACAGAATCCAATTATACCTCTTGGAACCAAGCATTCACCCTCGGCCTTACTATCA
AGAACAAACTCTGCTTCATTGATGGTGTTGGGTTTTATGTCCTGAAACTCGTAGATAGTAAATATAATTAA
Protein sequenceShow/hide protein sequence
MVETKPILRPPSYEIPENSSSTTNPTPPSFIAMYENPYYLHHSDSTNLVLVYDLLTESNYTSWNQAFTLGLTIKNKLCFIDGVGFYVLKLVDSKYN