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IVF0008935 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0008935
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationchr08:25065056..25065409
RNA-Seq ExpressionIVF0008935
SyntenyIVF0008935
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048414.1 uncharacterized protein E6C27_scaffold264G001400 [Cucumis melo var. makuwa]3.99e-4868.75Show/hide
Query:  QGDMMALDLNRPLRFEGAHFKHWKQKMSFFLPLEKVATTCITNELTTPVENPTEEEIWNHVTWIKSDFICKNLILNGLTDELYDYCNTMSITKEVWDALQ
        Q D+M+ DLNRP RFEGAHFK WKQKM FFL L+KVAT C T +L    ++PTEE++ N  TW ++DFICKNLILNGLT+ELYDY +TM+ TKEVWDALQ
Subjt:  QGDMMALDLNRPLRFEGAHFKHWKQKMSFFLPLEKVATTCITNELTTPVENPTEEEIWNHVTWIKSDFICKNLILNGLTDELYDYCNTMSITKEVWDALQ

Query:  KKYDTEDVGSKK
        KKYDTE+  SKK
Subjt:  KKYDTEDVGSKK

KAA0055814.1 hypothetical protein E6C27_scaffold181G002040 [Cucumis melo var. makuwa]3.18e-4866.96Show/hide
Query:  QGDMMALDLNRPLRFEGAHFKHWKQKMSFFLPLEKVATTCITNELTTPVENPTEEEIWNHVTWIKSDFICKNLILNGLTDELYDYCNTMSITKEVWDALQ
        Q D+M+ D NRP RFEGA+FK WKQKM FFL L+KV T C T +     ++PTEE++ N VTW ++DFICKNLILNGLTDELYDY +TM+  KEVWDALQ
Subjt:  QGDMMALDLNRPLRFEGAHFKHWKQKMSFFLPLEKVATTCITNELTTPVENPTEEEIWNHVTWIKSDFICKNLILNGLTDELYDYCNTMSITKEVWDALQ

Query:  KKYDTEDVGSKK
        KKYDTE+ GSKK
Subjt:  KKYDTEDVGSKK

KAA0058200.1 uncharacterized protein E6C27_scaffold274G005210 [Cucumis melo var. makuwa]5.29e-4866.96Show/hide
Query:  QGDMMALDLNRPLRFEGAHFKHWKQKMSFFLPLEKVATTCITNELTTPVENPTEEEIWNHVTWIKSDFICKNLILNGLTDELYDYCNTMSITKEVWDALQ
        Q D+M+ DLNRP RFEGAHFK WKQKM FFL L+KVAT C T +     ++PTE+++ N  TW ++DFICKNLILNGLTDELYDY +TM+  KEVWDALQ
Subjt:  QGDMMALDLNRPLRFEGAHFKHWKQKMSFFLPLEKVATTCITNELTTPVENPTEEEIWNHVTWIKSDFICKNLILNGLTDELYDYCNTMSITKEVWDALQ

Query:  KKYDTEDVGSKK
        KKYDTE+  SKK
Subjt:  KKYDTEDVGSKK

TYK09792.1 uncharacterized protein E5676_scaffold127G00840 [Cucumis melo var. makuwa]8.61e-83100Show/hide
Query:  MTSISQGDMMALDLNRPLRFEGAHFKHWKQKMSFFLPLEKVATTCITNELTTPVENPTEEEIWNHVTWIKSDFICKNLILNGLTDELYDYCNTMSITKEV
        MTSISQGDMMALDLNRPLRFEGAHFKHWKQKMSFFLPLEKVATTCITNELTTPVENPTEEEIWNHVTWIKSDFICKNLILNGLTDELYDYCNTMSITKEV
Subjt:  MTSISQGDMMALDLNRPLRFEGAHFKHWKQKMSFFLPLEKVATTCITNELTTPVENPTEEEIWNHVTWIKSDFICKNLILNGLTDELYDYCNTMSITKEV

Query:  WDALQKKYDTEDVGSKK
        WDALQKKYDTEDVGSKK
Subjt:  WDALQKKYDTEDVGSKK

XP_016903004.1 PREDICTED: uncharacterized protein LOC107992001 [Cucumis melo]2.80e-8096.58Show/hide
Query:  MTSISQGDMMALDLNRPLRFEGAHFKHWKQKMSFFLPLEKVATTCITNELTTPVENPTEEEIWNHVTWIKSDFICKNLILNGLTDELYDYCNTMSITKEV
        MTSISQGDMM LDLNRPLRFEGAHFKHWKQKMSFFLPLEKVATTCITNELTTPVENPTEEEIWNHV W KSDFICKN+ILNGLTDELYDYCNTMSITKEV
Subjt:  MTSISQGDMMALDLNRPLRFEGAHFKHWKQKMSFFLPLEKVATTCITNELTTPVENPTEEEIWNHVTWIKSDFICKNLILNGLTDELYDYCNTMSITKEV

Query:  WDALQKKYDTEDVGSKK
        WDALQKKYDTEDVGSKK
Subjt:  WDALQKKYDTEDVGSKK

TrEMBL top hitse value%identityAlignment
A0A1S4E451 uncharacterized protein LOC1079920016.0e-6196.58Show/hide
Query:  MTSISQGDMMALDLNRPLRFEGAHFKHWKQKMSFFLPLEKVATTCITNELTTPVENPTEEEIWNHVTWIKSDFICKNLILNGLTDELYDYCNTMSITKEV
        MTSISQGDMM LDLNRPLRFEGAHFKHWKQKMSFFLPLEKVATTCITNELTTPVENPTEEEIWNHV W KSDFICKN+ILNGLTDELYDYCNTMSITKEV
Subjt:  MTSISQGDMMALDLNRPLRFEGAHFKHWKQKMSFFLPLEKVATTCITNELTTPVENPTEEEIWNHVTWIKSDFICKNLILNGLTDELYDYCNTMSITKEV

Query:  WDALQKKYDTEDVGSKK
        WDALQKKYDTEDVGSKK
Subjt:  WDALQKKYDTEDVGSKK

A0A5A7USR3 Uncharacterized protein1.4e-3666.96Show/hide
Query:  QGDMMALDLNRPLRFEGAHFKHWKQKMSFFLPLEKVATTCITNELTTPVENPTEEEIWNHVTWIKSDFICKNLILNGLTDELYDYCNTMSITKEVWDALQ
        Q D+M+ DLNRP RFEGAHFK WKQKM FFL L+KVAT C T +     ++PTE+++ N  TW ++DFICKNLILNGLTDELYDY +TM+  KEVWDALQ
Subjt:  QGDMMALDLNRPLRFEGAHFKHWKQKMSFFLPLEKVATTCITNELTTPVENPTEEEIWNHVTWIKSDFICKNLILNGLTDELYDYCNTMSITKEVWDALQ

Query:  KKYDTEDVGSKK
        KKYDTE+  SKK
Subjt:  KKYDTEDVGSKK

A0A5D3BEH3 Uncharacterized protein7.2e-3868.75Show/hide
Query:  QGDMMALDLNRPLRFEGAHFKHWKQKMSFFLPLEKVATTCITNELTTPVENPTEEEIWNHVTWIKSDFICKNLILNGLTDELYDYCNTMSITKEVWDALQ
        Q D+M+ DLNRP RFEGAHFK WKQKM FFL L+KVAT C T +L    ++PTEE++ N  TW ++DFICKNLILNGLT+ELYDY +TM+ TKEVWDALQ
Subjt:  QGDMMALDLNRPLRFEGAHFKHWKQKMSFFLPLEKVATTCITNELTTPVENPTEEEIWNHVTWIKSDFICKNLILNGLTDELYDYCNTMSITKEVWDALQ

Query:  KKYDTEDVGSKK
        KKYDTE+  SKK
Subjt:  KKYDTEDVGSKK

A0A5D3CES3 Uncharacterized protein8.4e-63100Show/hide
Query:  MTSISQGDMMALDLNRPLRFEGAHFKHWKQKMSFFLPLEKVATTCITNELTTPVENPTEEEIWNHVTWIKSDFICKNLILNGLTDELYDYCNTMSITKEV
        MTSISQGDMMALDLNRPLRFEGAHFKHWKQKMSFFLPLEKVATTCITNELTTPVENPTEEEIWNHVTWIKSDFICKNLILNGLTDELYDYCNTMSITKEV
Subjt:  MTSISQGDMMALDLNRPLRFEGAHFKHWKQKMSFFLPLEKVATTCITNELTTPVENPTEEEIWNHVTWIKSDFICKNLILNGLTDELYDYCNTMSITKEV

Query:  WDALQKKYDTEDVGSKK
        WDALQKKYDTEDVGSKK
Subjt:  WDALQKKYDTEDVGSKK

A0A5D3CEV3 Uncharacterized protein1.0e-3666.96Show/hide
Query:  QGDMMALDLNRPLRFEGAHFKHWKQKMSFFLPLEKVATTCITNELTTPVENPTEEEIWNHVTWIKSDFICKNLILNGLTDELYDYCNTMSITKEVWDALQ
        Q D+M+ D NRP RFEGA+FK WKQKM FFL L+KV T C T +     ++PTEE++ N VTW ++DFICKNLILNGLTDELYDY +TM+  KEVWDALQ
Subjt:  QGDMMALDLNRPLRFEGAHFKHWKQKMSFFLPLEKVATTCITNELTTPVENPTEEEIWNHVTWIKSDFICKNLILNGLTDELYDYCNTMSITKEVWDALQ

Query:  KKYDTEDVGSKK
        KKYDTE+ GSKK
Subjt:  KKYDTEDVGSKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTAGTATAAGTCAAGGCGACATGATGGCCTTAGATCTCAACCGACCATTGCGCTTCGAAGGAGCACATTTTAAGCACTGGAAACAAAAGATGTCGTTCTTTTTACC
ATTGGAAAAGGTTGCCACCACTTGCATTACTAATGAACTGACAACTCCAGTCGAAAATCCAACTGAGGAGGAGATCTGGAACCATGTTACATGGATAAAGTCCGACTTCA
TATGTAAGAATCTAATTCTTAATGGACTTACTGATGAGCTTTATGATTACTGTAATACTATGTCCATCACGAAAGAAGTGTGGGATGCATTGCAAAAGAAATACGATACC
GAAGATGTCGGATCTAAGAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTAGTATAAGTCAAGGCGACATGATGGCCTTAGATCTCAACCGACCATTGCGCTTCGAAGGAGCACATTTTAAGCACTGGAAACAAAAGATGTCGTTCTTTTTACC
ATTGGAAAAGGTTGCCACCACTTGCATTACTAATGAACTGACAACTCCAGTCGAAAATCCAACTGAGGAGGAGATCTGGAACCATGTTACATGGATAAAGTCCGACTTCA
TATGTAAGAATCTAATTCTTAATGGACTTACTGATGAGCTTTATGATTACTGTAATACTATGTCCATCACGAAAGAAGTGTGGGATGCATTGCAAAAGAAATACGATACC
GAAGATGTCGGATCTAAGAAGTAA
Protein sequenceShow/hide protein sequence
MTSISQGDMMALDLNRPLRFEGAHFKHWKQKMSFFLPLEKVATTCITNELTTPVENPTEEEIWNHVTWIKSDFICKNLILNGLTDELYDYCNTMSITKEVWDALQKKYDT
EDVGSKK