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IVF0008960 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0008960
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationchr01:22163308..22163760
RNA-Seq ExpressionIVF0008960
SyntenyIVF0008960
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042193.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.55e-9694.59Show/hide
Query:  FGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWER
        F   +   AFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWER
Subjt:  FGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWER

Query:  PTFITKIRSFLGLMGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDACE
        PTFITKIRSFLGL GYYCRFVEGFSKLALPLTNLTRKNVKFEWTDACE
Subjt:  PTFITKIRSFLGLMGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDACE

KAA0047618.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]7.62e-7879.33Show/hide
Query:  MPFGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW
        M FGLTNAP AFM+LM+ VFHP+LDQFVI+FIDDILVYS SKEKH EHLRI  QTLR RELYAKFSKCEFWLD +++L HVVS EGICVDP+K +AV+KW
Subjt:  MPFGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW

Query:  ERPTFITKIRSFLGLMGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDACE
        ERPT I +IRSFL L  YY RFVEGFSKLAL LTNLT+KNVKFEWTDACE
Subjt:  ERPTFITKIRSFLGLMGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDACE

KAA0060259.1 RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa]3.39e-7880.42Show/hide
Query:  MPFGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW
        MPFGLTNAP AFMNLM+ +FHP+LDQFVIVFIDDILVY G+KEKHVEHL I LQ  + RELY KFSKCEFWLDWI+FL H+VSAEGICVDP KT+AVDKW
Subjt:  MPFGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW

Query:  ERPTFITKIRSFLGLMGYYCRFVEGFSKLALPLTNLTRKNVKF
        ER T +T++RSFLGL+GYY RFVEGFSKLALPLTNLT+KN+KF
Subjt:  ERPTFITKIRSFLGLMGYYCRFVEGFSKLALPLTNLTRKNVKF

TYK26763.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.94e-9795.27Show/hide
Query:  FGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWER
        F   +   AFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWER
Subjt:  FGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWER

Query:  PTFITKIRSFLGLMGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDACE
        PTFITKIRSFLGLMGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDACE
Subjt:  PTFITKIRSFLGLMGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDACE

XP_016900832.1 PREDICTED: RNA-directed DNA polymerase homolog [Cucumis melo]1.56e-8180.56Show/hide
Query:  MPFGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW
        MPFGLTNAP AFMNLM+ +FHP+LDQFVIVFIDDILVYSGSKEKHVEHL I LQ  + RELYAKF+KC+FWLDWI+FL H+VSAEGICVDP KT+AVDKW
Subjt:  MPFGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW

Query:  ERPTFITKIRSFLGLMGYYCRFVEGFSKLALPLTNLTRKNVKFE
        ER T +T++RSFLGL+GYY RFVEGFSKL LPLTNLT+KN+KFE
Subjt:  ERPTFITKIRSFLGLMGYYCRFVEGFSKLALPLTNLTRKNVKFE

TrEMBL top hitse value%identityAlignment
A0A1S4DXX5 RNA-directed DNA polymerase homolog2.4e-6280.56Show/hide
Query:  MPFGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW
        MPFGLTNAP AFMNLM+ +FHP+LDQFVIVFIDDILVYSGSKEKHVEHL I LQ  + RELYAKF+KC+FWLDWI+FL H+VSAEGICVDP KT+AVDKW
Subjt:  MPFGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW

Query:  ERPTFITKIRSFLGLMGYYCRFVEGFSKLALPLTNLTRKNVKFE
        ER T +T++RSFLGL+GYY RFVEGFSKL LPLTNLT+KN+KFE
Subjt:  ERPTFITKIRSFLGLMGYYCRFVEGFSKLALPLTNLTRKNVKFE

A0A5A7T0V4 Putative DNA/RNA polymerases superfamily protein3.1e-6281.21Show/hide
Query:  MPFGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW
        MPFGLTNAPAAFM+LM++VFH +LDQFVIVFIDDILVYS SKEKHVEHLRI LQTL  RELYAKFSKCEFWLD +V L H+VS EGICVDP+K +A DK 
Subjt:  MPFGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW

Query:  ERPTFITKIRSFLGLMGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDAC
        ERPT IT+I+SFLGL  YY + VEGFSKLALPLTNLTRKNVKFEWTDAC
Subjt:  ERPTFITKIRSFLGLMGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDAC

A0A5A7TG44 DNA/RNA polymerases superfamily protein1.0e-7699.29Show/hide
Query:  AFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIR
        AFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIR
Subjt:  AFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIR

Query:  SFLGLMGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDACE
        SFLGL GYYCRFVEGFSKLALPLTNLTRKNVKFEWTDACE
Subjt:  SFLGLMGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDACE

A0A5A7TXH8 DNA/RNA polymerases superfamily protein1.8e-6279.33Show/hide
Query:  MPFGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW
        M FGLTNAP AFM+LM+ VFHP+LDQFVI+FIDDILVYS SKEKH EHLRI  QTLR RELYAKFSKCEFWLD +++L HVVS EGICVDP+K +AV+KW
Subjt:  MPFGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW

Query:  ERPTFITKIRSFLGLMGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDACE
        ERPT I +IRSFL L  YY RFVEGFSKLAL LTNLT+KNVKFEWTDACE
Subjt:  ERPTFITKIRSFLGLMGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDACE

A0A5D3DT34 DNA/RNA polymerases superfamily protein2.0e-77100Show/hide
Query:  AFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIR
        AFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIR
Subjt:  AFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIR

Query:  SFLGLMGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDACE
        SFLGLMGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDACE
Subjt:  SFLGLMGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDACE

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.61.4e-2738.78Show/hide
Query:  MPFGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW
        MPFGL NAPA F   M+ +  P L++  +V++DDI+V+S S ++H++ L +  + L    L  +  KCEF      FL HV++ +GI  +P K +A+ K+
Subjt:  MPFGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW

Query:  ERPTFITKIRSFLGLMGYYCRFVEGFSKLALPLTNLTRKNVKFEWTD
          PT   +I++FLGL GYY +F+  F+ +A P+T   +KN+K + T+
Subjt:  ERPTFITKIRSFLGLMGYYCRFVEGFSKLALPLTNLTRKNVKFEWTD

P0CT34 Transposon Tf2-1 polyprotein7.5e-2132.19Show/hide
Query:  MPFGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW
        MP+G++ APA F   ++ +     +  V+ ++DDIL++S S+ +HV+H++  LQ L++  L    +KCEF    + F+ + +S +G          V +W
Subjt:  MPFGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW

Query:  ERPTFITKIRSFLGLMGYYCRFVEGFSKLALPLTNLTRKNVKFEWT
        ++P    ++R FLG + Y  +F+   S+L  PL NL +K+V+++WT
Subjt:  ERPTFITKIRSFLGLMGYYCRFVEGFSKLALPLTNLTRKNVKFEWT

P0CT41 Transposon Tf2-12 polyprotein7.5e-2132.19Show/hide
Query:  MPFGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW
        MP+G++ APA F   ++ +     +  V+ ++DDIL++S S+ +HV+H++  LQ L++  L    +KCEF    + F+ + +S +G          V +W
Subjt:  MPFGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW

Query:  ERPTFITKIRSFLGLMGYYCRFVEGFSKLALPLTNLTRKNVKFEWT
        ++P    ++R FLG + Y  +F+   S+L  PL NL +K+V+++WT
Subjt:  ERPTFITKIRSFLGLMGYYCRFVEGFSKLALPLTNLTRKNVKFEWT

P20825 Retrovirus-related Pol polyprotein from transposon 2971.9e-2436.81Show/hide
Query:  MPFGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW
        MPFGL NAPA F   M+ +  P L++  +V++DDI+++S S  +H+  +++    L    L  +  KCEF      FL H+V+ +GI  +P K KA+  +
Subjt:  MPFGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW

Query:  ERPTFITKIRSFLGLMGYYCRFVEGFSKLALPLTNLTRKNVKFE
          PT   +IR+FLGL GYY +F+  ++ +A P+T+  +K  K +
Subjt:  ERPTFITKIRSFLGLMGYYCRFVEGFSKLALPLTNLTRKNVKFE

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus2.3e-2537.68Show/hide
Query:  MPFGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW
        +PFGL NAPA F  ++  +   H+ +   V+IDDI+V+S   + H ++LR+ L +L    L     K  F    + FL ++V+A+GI  DP+K +A+ + 
Subjt:  MPFGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW

Query:  ERPTFITKIRSFLGLMGYYCRFVEGFSKLALPLTNLTR
          PT + +++ FLG+  YY +F++ ++K+A PLTNLTR
Subjt:  ERPTFITKIRSFLGLMGYYCRFVEGFSKLALPLTNLTR

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein1.8e-1740.38Show/hide
Query:  VEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFL--VHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLMGYYCRFVEGFSKLALPLTNLTRKNVKF
        + HL + LQ     + YA   KC F    I +L   H++S EG+  DP K +A+  W  P   T++R FLGL GYY RFV+ + K+  PLT L +KN   
Subjt:  VEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFL--VHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLMGYYCRFVEGFSKLALPLTNLTRKNVKF

Query:  EWTD
        +WT+
Subjt:  EWTD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCTTTGGGTTGACTAATGCCCCTGCAGCCTTCATGAACTTGATGAGTCAGGTGTTTCATCCACACTTAGATCAATTTGTTATTGTGTTCATAGATGACATATTGGT
TTATTCTGGGAGTAAAGAAAAGCATGTTGAACACCTCAGAATAGGGTTACAGACACTGCGACACCGAGAATTGTATGCTAAATTCAGTAAGTGCGAATTCTGGCTGGATT
GGATAGTATTTTTGGTTCATGTGGTTTCAGCAGAAGGCATTTGTGTCGATCCTCGGAAAACTAAAGCAGTAGATAAGTGGGAAAGACCTACCTTCATCACTAAGATCCGA
AGTTTTCTTGGTTTAATGGGGTATTATTGCCGATTTGTAGAAGGGTTTTCAAAATTGGCACTTCCCTTGACCAACCTAACAAGGAAGAATGTGAAGTTTGAATGGACAGA
TGCTTGTGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGCCCTTTGGGTTGACTAATGCCCCTGCAGCCTTCATGAACTTGATGAGTCAGGTGTTTCATCCACACTTAGATCAATTTGTTATTGTGTTCATAGATGACATATTGGT
TTATTCTGGGAGTAAAGAAAAGCATGTTGAACACCTCAGAATAGGGTTACAGACACTGCGACACCGAGAATTGTATGCTAAATTCAGTAAGTGCGAATTCTGGCTGGATT
GGATAGTATTTTTGGTTCATGTGGTTTCAGCAGAAGGCATTTGTGTCGATCCTCGGAAAACTAAAGCAGTAGATAAGTGGGAAAGACCTACCTTCATCACTAAGATCCGA
AGTTTTCTTGGTTTAATGGGGTATTATTGCCGATTTGTAGAAGGGTTTTCAAAATTGGCACTTCCCTTGACCAACCTAACAAGGAAGAATGTGAAGTTTGAATGGACAGA
TGCTTGTGAATAG
Protein sequenceShow/hide protein sequence
MPFGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIR
SFLGLMGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDACE