CuGenDBv2

Gene ID	IVF0009045
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Selenoprotein H
Genome location	chr06:16641155..16641478
RNA-Seq Expression	IVF0009045
Synteny	IVF0009045
Gene Ontology terms	GO:0005794 - Golgi apparatus (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0060486.1 selenoprotein H [Cucumis melo var. makuwa]

1.02e-65

100

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Query:  MSRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCALENGKVEEVENKETKIDASLEELDKDAKSTTIVIEHYKQCQSFKKRAIHVKISLKNGVLGINVLLNP
        MSRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCALENGKVEEVENKETKIDASLEELDKDAKSTTIVIEHYKQCQSFKKRAIHVKISLKNGVLGINVLLNP
Subjt:  MSRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCALENGKVEEVENKETKIDASLEELDKDAKSTTIVIEHYKQCQSFKKRAIHVKISLKNGVLGINVLLNP

Query:  DKPRRVA
        DKPRRVA
Subjt:  DKPRRVA

KAE8652181.1 hypothetical protein Csa_022241 [Cucumis sativus]

1.01e-31

65.71

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Query:  SRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCA-LENGKVEEVENKETKIDASLEELDKDAKSTTIVIEHYKQCQSFKKRAIHVKISLKNGVLGINVLLNP
        SR+ +S  +L  NSK +L V +  K KK K A  ENGKVEEVENKE K+D  L +LDKDAKS T+VIEH KQCQSFKKRAI V+  L+NGV GI VLLNP
Subjt:  SRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCA-LENGKVEEVENKETKIDASLEELDKDAKSTTIVIEHYKQCQSFKKRAIHVKISLKNGVLGINVLLNP

Query:  DKPRR
        DKPRR
Subjt:  DKPRR

XP_004138763.1 selenoprotein H [Cucumis sativus]

1.39e-32

65.71

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Query:  SRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCA-LENGKVEEVENKETKIDASLEELDKDAKSTTIVIEHYKQCQSFKKRAIHVKISLKNGVLGINVLLNP
        SR+ +S  +L  NSK +L V +  K KK K A  ENGKVEEVENKE K+D  L +LDKDAKS T+VIEH KQCQSFKKRAI V+  L+NGV GI VLLNP
Subjt:  SRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCA-LENGKVEEVENKETKIDASLEELDKDAKSTTIVIEHYKQCQSFKKRAIHVKISLKNGVLGINVLLNP

Query:  DKPRR
        DKPRR
Subjt:  DKPRR

XP_008445096.1 PREDICTED: selenoprotein H [Cucumis melo]

4.87e-33

66.67

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Query:  SRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCA-LENGKVEEVENKETKIDASLEELDKDAKSTTIVIEHYKQCQSFKKRAIHVKISLKNGVLGINVLLNP
        SRV +S  +L  NSK +L V +  K KK K A  ENGKVEEVENKE K+D  LE+ DKDAKS T+VIEH KQCQSFKKRAI V+  L+NGV GI VLLNP
Subjt:  SRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCA-LENGKVEEVENKETKIDASLEELDKDAKSTTIVIEHYKQCQSFKKRAIHVKISLKNGVLGINVLLNP

Query:  DKPRR
        DKPRR
Subjt:  DKPRR

XP_008452347.1 PREDICTED: uncharacterized protein LOC103493406 [Cucumis melo]

3.98e-63

97.2

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Query:  MSRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCALENGKVEEVENKETKIDASLEELDKDAKSTTIVIEHYKQCQSFKKRAIHVKISLKNGVLGINVLLNP
        MSRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCAL+NGKVEEVENKETKIDASLEELDKDAKSTTIVIEHYKQCQSFKKRAIHVK SLKNGVL INVLLNP
Subjt:  MSRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCALENGKVEEVENKETKIDASLEELDKDAKSTTIVIEHYKQCQSFKKRAIHVKISLKNGVLGINVLLNP

Query:  DKPRRVA
        DKPRRVA
Subjt:  DKPRRVA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LPC9 Uncharacterized protein

6.4e-25

65.71

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Query:  SRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCA-LENGKVEEVENKETKIDASLEELDKDAKSTTIVIEHYKQCQSFKKRAIHVKISLKNGVLGINVLLNP
        SR+ +S  +L  NSK +L V +  K KK K A  ENGKVEEVENKE K+D  L +LDKDAKS T+VIEH KQCQSFKKRAI V+  L+NGV GI VLLNP
Subjt:  SRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCA-LENGKVEEVENKETKIDASLEELDKDAKSTTIVIEHYKQCQSFKKRAIHVKISLKNGVLGINVLLNP

Query:  DKPRR
        DKPRR
Subjt:  DKPRR

A0A1S3BBW1 selenoprotein H

2.9e-25

66.67

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Query:  SRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCA-LENGKVEEVENKETKIDASLEELDKDAKSTTIVIEHYKQCQSFKKRAIHVKISLKNGVLGINVLLNP
        SRV +S  +L  NSK +L V +  K KK K A  ENGKVEEVENKE K+D  LE+ DKDAKS T+VIEH KQCQSFKKRAI V+  L+NGV GI VLLNP
Subjt:  SRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCA-LENGKVEEVENKETKIDASLEELDKDAKSTTIVIEHYKQCQSFKKRAIHVKISLKNGVLGINVLLNP

Query:  DKPRR
        DKPRR
Subjt:  DKPRR

A0A1S3BTN8 uncharacterized protein LOC103493406

1.6e-47

97.2

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Query:  MSRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCALENGKVEEVENKETKIDASLEELDKDAKSTTIVIEHYKQCQSFKKRAIHVKISLKNGVLGINVLLNP
        MSRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCAL+NGKVEEVENKETKIDASLEELDKDAKSTTIVIEHYKQCQSFKKRAIHVK SLKNGVL INVLLNP
Subjt:  MSRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCALENGKVEEVENKETKIDASLEELDKDAKSTTIVIEHYKQCQSFKKRAIHVKISLKNGVLGINVLLNP

Query:  DKPRRVA
        DKPRRVA
Subjt:  DKPRRVA

A0A5A7V1X0 Selenoprotein H

1.7e-49

100

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Query:  MSRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCALENGKVEEVENKETKIDASLEELDKDAKSTTIVIEHYKQCQSFKKRAIHVKISLKNGVLGINVLLNP
        MSRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCALENGKVEEVENKETKIDASLEELDKDAKSTTIVIEHYKQCQSFKKRAIHVKISLKNGVLGINVLLNP
Subjt:  MSRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCALENGKVEEVENKETKIDASLEELDKDAKSTTIVIEHYKQCQSFKKRAIHVKISLKNGVLGINVLLNP

Query:  DKPRRVA
        DKPRRVA
Subjt:  DKPRRVA

A0A5A7VBJ3 Selenoprotein H

3.5e-23

65.69

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Query:  SRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCA-LENGKVEEVENKETKIDASLEELDKDAKSTTIVIEHYKQCQSFKKRAIHVKISLKNGVLGINVLLNP
        SRV +S  +L  NSK +L V +  K KK K A  ENGKVEEVENKE K+D  LE+ DKDAKS T+VIEH KQCQSFKKRAI V+  L+NGV GI VLLNP
Subjt:  SRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCA-LENGKVEEVENKETKIDASLEELDKDAKSTTIVIEHYKQCQSFKKRAIHVKISLKNGVLGINVLLNP

Query:  DK
        DK
Subjt:  DK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G24440.1 selenium binding

8.8e-11

43.27

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Query:  SFTQLMTNSKVNLNVMKFSKCKKVKCALENGKVEEV-----ENKETKIDASLEELDKDAKSTTIVIEHYKQCQSFKKRAIHVKISLKNGVLGINVLLNPD
        S ++LM          K +K K V  A +  K EEV     + +E   DA+ +E D D+    IVIEH KQC+SFK+RA  VK  L+  V GI V +NPD
Subjt:  SFTQLMTNSKVNLNVMKFSKCKKVKCALENGKVEEV-----ENKETKIDASLEELDKDAKSTTIVIEHYKQCQSFKKRAIHVKISLKNGVLGINVLLNPD

Query:  KPRR
        KPRR
Subjt:  KPRR

AT4G31360.1 selenium binding

6.8e-11

44.94

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Query:  KCKKVKCALENG------KVEEVENKETKIDASLEELD---KDAKSTTIVIEHYKQCQSFKKRAIHVKISLKNGVLGINVLLNPDKPRR
        K K+   A+E G      K EEVE  E  ++  +E+ +   +D   T IVIEH KQC +FK RAI VK +L+  V G+ V LNP+KPRR
Subjt:  KCKKVKCALENG------KVEEVENKETKIDASLEELD---KDAKSTTIVIEHYKQCQSFKKRAIHVKISLKNGVLGINVLLNPDKPRR

Sequences

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CDS sequence

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ATGTCCAGGGTGATTCAGAGTTTCACTCAACTTATGACAAACTCCAAGGTCAATTTGAATGTCATGAAGTTTTCAAAGTGTAAGAAGGTGAAATGTGCTCTGGAGAATGG
GAAGGTCGAGGAGGTTGAAAATAAGGAAACGAAAATTGATGCTAGCTTAGAGGAACTTGACAAGGATGCTAAGAGTACAACGATTGTGATTGAACATTACAAACAATGCC
AATCATTCAAGAAAAGGGCCATTCACGTGAAAATTAGTCTAAAGAATGGTGTTCTTGGGATCAATGTGTTACTTAACCCTGATAAGCCAAGAAGGGTTGCTTAG

mRNA sequence

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Protein sequence

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MSRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCALENGKVEEVENKETKIDASLEELDKDAKSTTIVIEHYKQCQSFKKRAIHVKISLKNGVLGINVLLNPDKPRRVA

IVF0009045 (gene) of Melon (IVF77) v1 genome