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IVF0009123 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0009123
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass, expressed
Genome locationchr10:19519213..19521895
RNA-Seq ExpressionIVF0009123
SyntenyIVF0009123
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057641.1 hypothetical protein E6C27_scaffold43054G00020 [Cucumis melo var. makuwa]9.41e-1448.21Show/hide
Query:  QRRKQDELRNFWCSSQENANENSPDSTFISRGKKRSCNGFF----IFYWS-KLRDSYFEDFNLHSWHHFSPVFPKYRSGSELLRGRTKVQPETIERMANA
        QRRKQ EL++FWCSSQENA++N+PDS F S GKKRS  GFF    I + S  L+ SY+EDFN HSWH               L G      +  +R    
Subjt:  QRRKQDELRNFWCSSQENANENSPDSTFISRGKKRSCNGFF----IFYWS-KLRDSYFEDFNLHSWHHFSPVFPKYRSGSELLRGRTKVQPETIERMANA

Query:  FPTSGERSSGAK
         PTSGE SSG +
Subjt:  FPTSGERSSGAK

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]3.46e-1356.47Show/hide
Query:  FQRVANAHSMSETTENTFQRRKQDELRNFWCSSQENANENSPDSTFISRGKKRSCNGFF----IFYWS-KLRDSYFEDFNLHSWH
        FQRV NA  +SETT N    +K+ EL++FWCSSQENA EN  DS F S GKK+S +GFF    I + S   R SY EDFN +SWH
Subjt:  FQRVANAHSMSETTENTFQRRKQDELRNFWCSSQENANENSPDSTFISRGKKRSCNGFF----IFYWS-KLRDSYFEDFNLHSWH

KAA0065520.1 retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo var. makuwa]1.48e-3559.06Show/hide
Query:  MLFQRVANAHSMSETTENTFQRRKQDELRNFWCSSQENANENSPDSTFISRGKKRSCNGFFIFYWS-----KLRDSYFEDFNLHSWHHFSPVFPKYRSGS
        +LFQRVANA  +S   ++ FQ+ K  +L+NFWCSSQE+A+EN+PDS F+S  KKRSC+GF +         +L+DSY EDF+LHSW   SPVF KYR+GS
Subjt:  MLFQRVANAHSMSETTENTFQRRKQDELRNFWCSSQENANENSPDSTFISRGKKRSCNGFFIFYWS-----KLRDSYFEDFNLHSWHHFSPVFPKYRSGS

Query:  ELLRGRTKVQPETIERMANAFPTSGER
        +L+RGRTKVQ  TIE+MAN  PTSG+R
Subjt:  ELLRGRTKVQPETIERMANAFPTSGER

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]1.44e-1469.81Show/hide
Query:  EDFNLHSWHHFSPVFPKYRSGSELLRGRTKVQPETIERMANAFPTSGERSSGA
        +DF+LH WHH SP+FP+YRSGSEL+  RTKVQ  TIE++ANA PTSGERSS +
Subjt:  EDFNLHSWHHFSPVFPKYRSGSELLRGRTKVQPETIERMANAFPTSGERSSGA

TYK22521.1 uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]7.40e-1040.34Show/hide
Query:  QRVANAHSMSETT-------ENTFQRRKQDELRNFWCSSQENANENSPDSTFISRGKKRSCNGFFIFYWSKLRDSYFEDFNLHSWHHFSPVFPKYRSGSE
        Q++ANA +   T        E    RRK  EL +FWCSSQENA++N+PDS F S  KKRS +GFF      LR                     ++ GSE
Subjt:  QRVANAHSMSETT-------ENTFQRRKQDELRNFWCSSQENANENSPDSTFISRGKKRSCNGFFIFYWSKLRDSYFEDFNLHSWHHFSPVFPKYRSGSE

Query:  LLRGRTKVQPETIERMANA
        L+ GRT V+ +T+++MANA
Subjt:  LLRGRTKVQPETIERMANA

TrEMBL top hitse value%identityAlignment
A0A5A7UVV0 Uncharacterized protein1.3e-1146.67Show/hide
Query:  ENTFQRRKQDELRNFWCSSQENANENSPDSTFISRGKKRSCNGFF----IFYWS-KLRDSYFEDFNLHSWHHFSPVFPKYRSGSELLRGRTKVQPETIER
        E   QRRKQ EL++FWCSSQENA++N+PDS F S GKKRS  GFF    I + S  L+ SY+EDFN HSWH               L G      +  +R
Subjt:  ENTFQRRKQDELRNFWCSSQENANENSPDSTFISRGKKRSCNGFF----IFYWS-KLRDSYFEDFNLHSWHHFSPVFPKYRSGSELLRGRTKVQPETIER

Query:  MANAFPTSGERSSGAKTSEK
             PTSGE SSG +   K
Subjt:  MANAFPTSGERSSGAKTSEK

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein2.2e-1156.47Show/hide
Query:  FQRVANAHSMSETTENTFQRRKQDELRNFWCSSQENANENSPDSTFISRGKKRSCNGFF----IFYWS-KLRDSYFEDFNLHSWH
        FQRV NA  +SETT N    +K+ EL++FWCSSQENA EN  DS F S GKK+S +GFF    I + S   R SY EDFN +SWH
Subjt:  FQRVANAHSMSETTENTFQRRKQDELRNFWCSSQENANENSPDSTFISRGKKRSCNGFF----IFYWS-KLRDSYFEDFNLHSWH

A0A5A7VEB1 Retrotransposon protein, putative, Ty3-gypsy subclass, expressed9.6e-3158.91Show/hide
Query:  MLFQRVANAHSMSETTENTFQRRKQDELRNFWCSSQENANENSPDSTFISRGKKRSCNGFFIF-----YWSKLRDSYFEDFNLHSWHHFSPVFPKYRSGS
        +LFQRVANA  +S   ++ FQ+ K  +L+NFWCSSQE+A+EN+PDS F+S  KKRSC+GF +         +L+DSY EDF+LHSW   SPVF KYR+GS
Subjt:  MLFQRVANAHSMSETTENTFQRRKQDELRNFWCSSQENANENSPDSTFISRGKKRSCNGFFIF-----YWSKLRDSYFEDFNLHSWHHFSPVFPKYRSGS

Query:  ELLRGRTKVQPETIERMANAFPTSGERSS
        +L+RGRTKVQ  TIE+MAN  PTSG+R S
Subjt:  ELLRGRTKVQPETIERMANAFPTSGERSS

A0A5D3BG85 Uncharacterized protein3.4e-1269.81Show/hide
Query:  EDFNLHSWHHFSPVFPKYRSGSELLRGRTKVQPETIERMANAFPTSGERSSGA
        +DF+LH WHH SP+FP+YRSGSEL+  RTKVQ  TIE++ANA PTSGERSS +
Subjt:  EDFNLHSWHHFSPVFPKYRSGSELLRGRTKVQPETIERMANAFPTSGERSSGA

A0A5D3DFP2 Uncharacterized protein5.1e-0840.34Show/hide
Query:  QRVANAHSMSET-------TENTFQRRKQDELRNFWCSSQENANENSPDSTFISRGKKRSCNGFFIFYWSKLRDSYFEDFNLHSWHHFSPVFPKYRSGSE
        Q++ANA +   T        E    RRK  EL +FWCSSQENA++N+PDS F S  KKRS +GFF                L + H         + GSE
Subjt:  QRVANAHSMSET-------TENTFQRRKQDELRNFWCSSQENANENSPDSTFISRGKKRSCNGFFIFYWSKLRDSYFEDFNLHSWHHFSPVFPKYRSGSE

Query:  LLRGRTKVQPETIERMANA
        L+ GRT V+ +T+++MANA
Subjt:  LLRGRTKVQPETIERMANA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCTTCCAACGAGTGGCGAATGCTCATTCAATGTCAGAAACCACTGAAAATACATTTCAACGAAGGAAACAGGATGAGCTCAGGAACTTCTGGTGTTCGTCCCAAGA
AAATGCAAACGAGAATTCCCCGGACTCAACTTTTATATCACGGGGTAAAAAGCGGTCCTGCAACGGTTTCTTTATTTTTTATTGGTCAAAACTTCGGGACTCATACTTTG
AGGACTTCAATCTACATTCCTGGCATCATTTCTCACCCGTTTTCCCAAAGTATAGGTCGGGAAGTGAGCTCCTTAGAGGGAGAACTAAGGTGCAACCCGAAACAATCGAA
AGGATGGCCAATGCTTTTCCAACGAGTGGTGAACGCTCGTCTGGTGCAAAAACATCTGAAAAAGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTCTTCCAACGAGTGGCGAATGCTCATTCAATGTCAGAAACCACTGAAAATACATTTCAACGAAGGAAACAGGATGAGCTCAGGAACTTCTGGTGTTCGTCCCAAGA
AAATGCAAACGAGAATTCCCCGGACTCAACTTTTATATCACGGGGTAAAAAGCGGTCCTGCAACGGTTTCTTTATTTTTTATTGGTCAAAACTTCGGGACTCATACTTTG
AGGACTTCAATCTACATTCCTGGCATCATTTCTCACCCGTTTTCCCAAAGTATAGGTCGGGAAGTGAGCTCCTTAGAGGGAGAACTAAGGTGCAACCCGAAACAATCGAA
AGGATGGCCAATGCTTTTCCAACGAGTGGTGAACGCTCGTCTGGTGCAAAAACATCTGAAAAAGCTTAA
Protein sequenceShow/hide protein sequence
MLFQRVANAHSMSETTENTFQRRKQDELRNFWCSSQENANENSPDSTFISRGKKRSCNGFFIFYWSKLRDSYFEDFNLHSWHHFSPVFPKYRSGSELLRGRTKVQPETIE
RMANAFPTSGERSSGAKTSEKA