; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0009172 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0009172
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationchr04:29745132..29745865
RNA-Seq ExpressionIVF0009172
SyntenyIVF0009172
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063362.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]1.78e-12982.43Show/hide
Query:  MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSMV--------------LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEATV
        MVFA+LRDNQLYANRKKCVFAHSQI YLGHIISK+GVE DQDKV  M+              LG TGYYRRFVK YGEIAAPLTKLL KN+FKWDE AT+
Subjt:  MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSMV--------------LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEATV

Query:  AFENLKLAMTTIPVLALPDWSLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHYLLGRKFTIMSDQKALKFLLE
        AFE+LK AMTTIPVLALPDWSLPFM+E DASGSGLGA+LSQNGHPI FFSQKLSPRAQSKSIY+RELMAVVLS+QKWQHYLLGR+FTI+SDQKALKFLLE
Subjt:  AFENLKLAMTTIPVLALPDWSLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHYLLGRKFTIMSDQKALKFLLE

Query:  QREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPRL
        QRE+QPQFQKWLTKLLGYDFEILYQPGLQNKA +AL R+
Subjt:  QREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPRL

KAA0063770.1 Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa]1.26e-13077.5Show/hide
Query:  MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSMV--------------LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEATV
        MVFAVLRDNQLYAN+KKCVFAHSQIQYLGH ISK+GV+AD+DK+ SM+              LGLTGYY +FV+GYGEIAAPLTKLLQKN+FKWD EA +
Subjt:  MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSMV--------------LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEATV

Query:  AFENLKLAMTTIPVLALPDWSLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHYLLGRKFTIMSDQKALKFLLE
        AFENLK  MTT+PVLALPDW+LPF +E DASGSGLGAVLSQ  HPI FFSQKLS RAQ KSI +RELMAVVLS+QKW+HYLLGRKFTI+SDQKALKFLLE
Subjt:  AFENLKLAMTTIPVLALPDWSLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHYLLGRKFTIMSDQKALKFLLE

Query:  QREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPRLK
        QRE+QPQFQKWLTKLLGYDFEILYQPGL NKA + L R++
Subjt:  QREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPRLK

KAA0065995.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]4.71e-13284.52Show/hide
Query:  MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSMV--------------LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEATV
        MVFA+LRDNQLYANRKKCVFAHSQIQYLGHIISK GVEADQDKV SM+              LGLTGYYRRFVK YGEIAAPLTKLLQKN+FKWDE AT+
Subjt:  MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSMV--------------LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEATV

Query:  AFENLKLAMTTIPVLALPDWSLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHYLLGRKFTIMSDQKALKFLLE
        AFE+LKLAMTTIPVL LPDWSLPFM+E DASGSGLGAVLSQNGHPI FFSQKLSPRAQSKSIY+RELMAVVLSVQKW+HYLLGR+FTI+SDQKALKFL E
Subjt:  AFENLKLAMTTIPVLALPDWSLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHYLLGRKFTIMSDQKALKFLLE

Query:  QREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPRL
        QRE+QPQFQKWLTKLLG DFEILYQPGLQNKAA+AL R+
Subjt:  QREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPRL

KAE8637370.1 hypothetical protein CSA_004463 [Cucumis sativus]5.30e-13179.17Show/hide
Query:  MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSMV--------------LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEATV
        MVFAVLRDN L+AN+KKCV AHS+IQYLGHIIS KGV+AD++K+  MV              LGL+GYYRRFVKGYGEIAAPLT+LLQKNSF WDE+AT 
Subjt:  MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSMV--------------LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEATV

Query:  AFENLKLAMTTIPVLALPDWSLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHYLLGRKFTIMSDQKALKFLLE
        AFE LK+AMTTIPVLALP+W LPF++E DASG+GLGAVLSQNGHPI FFSQKLS RAQ+KSIY+RELMAVVLSVQKW+HYLLGRKFTI+SDQKALKFLLE
Subjt:  AFENLKLAMTTIPVLALPDWSLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHYLLGRKFTIMSDQKALKFLLE

Query:  QREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPRLK
        QRE+QPQFQKWLTKLLGYDFEILYQPGLQNKAA+AL R++
Subjt:  QREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPRLK

TYJ99689.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]8.66e-13282.99Show/hide
Query:  MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSMV--------------LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEATV
        MVF VLRDNQLYANRKKCVFAHSQIQYLGH IS+KGVEADQ+KV SM+              L LTGYYRRFVKGYGEI APLTKLLQKNSFKWD EA +
Subjt:  MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSMV--------------LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEATV

Query:  AFENLKLAMTTIPVLALPDWSLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHYLLGRKFTIMSDQKALKFLLE
        AFENLKLAMTT  VLALPDWSLPF+VE DASG GLGAVLSQNGHPI FFSQKLSPRAQ+KSIY RELM VVLSVQKW+HYLLGRKFTIMSDQKALKFLLE
Subjt:  AFENLKLAMTTIPVLALPDWSLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHYLLGRKFTIMSDQKALKFLLE

Query:  QREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPRLKT
        QRE+QPQFQKWLT LLGYDFEILYQPGLQNKAA+AL R+ T
Subjt:  QREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPRLKT

TrEMBL top hitse value%identityAlignment
A0A5A7VJU2 Ty3/gypsy retrotransposon protein9.0e-10984.52Show/hide
Query:  MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSMV--------------LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEATV
        MVFA+LRDNQLYANRKKCVFAHSQIQYLGHIISK GVEADQDKV SM+              LGLTGYYRRFVK YGEIAAPLTKLLQKN+FKWDE AT+
Subjt:  MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSMV--------------LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEATV

Query:  AFENLKLAMTTIPVLALPDWSLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHYLLGRKFTIMSDQKALKFLLE
        AFE+LKLAMTTIPVL LPDWSLPFM+E DASGSGLGAVLSQNGHPI FFSQKLSPRAQSKSIY+RELMAVVLSVQKW+HYLLGR+FTI+SDQKALKFL E
Subjt:  AFENLKLAMTTIPVLALPDWSLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHYLLGRKFTIMSDQKALKFLLE

Query:  QREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPRL
        QRE+QPQFQKWLTKLLG DFEILYQPGLQNKAA+AL R+
Subjt:  QREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPRL

A0A5D3BBH7 Ty3/gypsy retrotransposon protein7.6e-10883.68Show/hide
Query:  MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSMV--------------LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEATV
        MVFA LRDNQLYANRKKCVFAHSQI YLGH+ISK GVEADQDKV SM+              LGLTGYYRRFVKGYGEIAAPLTKLLQKN+FKWDE AT+
Subjt:  MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSMV--------------LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEATV

Query:  AFENLKLAMTTIPVLALPDWSLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHYLLGRKFTIMSDQKALKFLLE
        AFE+LK AM+TIPVLALPDWSLPFM+E DASGSGLGAVLSQN HPI FFSQKLS RAQ+KSIY+RELMAVVLSVQKW+HYLLGR+FTIMSDQKALKFLLE
Subjt:  AFENLKLAMTTIPVLALPDWSLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHYLLGRKFTIMSDQKALKFLLE

Query:  QREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPRL
        QRE+QPQFQKWLTKLLGYDFEILYQPGLQNKAA+AL R+
Subjt:  QREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPRL

A0A5D3CT96 Ty3/gypsy retrotransposon protein2.0e-10884.1Show/hide
Query:  MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSMV--------------LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEATV
        MVFA LRDNQLYANRKKCVFAHSQI YLGH+ISK GVEADQDKV SM+              LGLTGYYRRFVKGYGEIAAPLTKLLQKN+FKWDE AT+
Subjt:  MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSMV--------------LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEATV

Query:  AFENLKLAMTTIPVLALPDWSLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHYLLGRKFTIMSDQKALKFLLE
        AFENLK AM+TIPVLALPDWSLPFM+E DASGSGLGAVLSQN HPI FFSQKLS RAQ+KSIY+RELMAVVLSVQKW+HYLLGR+FTIMSDQKALKFLLE
Subjt:  AFENLKLAMTTIPVLALPDWSLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHYLLGRKFTIMSDQKALKFLLE

Query:  QREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPRL
        QRE+QPQFQKWLTKLLGYDFEILYQPGLQNKAA+AL R+
Subjt:  QREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPRL

A0A5D3DZK6 Ty3/gypsy retrotransposon protein7.6e-10883.68Show/hide
Query:  MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSMV--------------LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEATV
        MVFA LRDNQLYANRKKCVFAHSQI YLGH+ISK GVEADQDKV SM+              LGLTGYYRRFVKGYGEIAAPLTKLLQKN+FKWDE AT+
Subjt:  MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSMV--------------LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEATV

Query:  AFENLKLAMTTIPVLALPDWSLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHYLLGRKFTIMSDQKALKFLLE
        AFE+LK AM+TIPVLALPDWSLPFM+E DASGSGLGAVLSQN HPI FFSQKLS RAQ+KSIY+RELMAVVLSVQKW+HYLLGR+FTIMSDQKALKFLLE
Subjt:  AFENLKLAMTTIPVLALPDWSLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHYLLGRKFTIMSDQKALKFLLE

Query:  QREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPRL
        QRE+QPQFQKWLTKLLGYDFEILYQPGLQNKAA+AL R+
Subjt:  QREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPRL

A0A5D3E325 Ty3/gypsy retrotransposon protein7.6e-10883.68Show/hide
Query:  MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSMV--------------LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEATV
        MVFA LRDNQLYANRKKCVFAHSQI YLGH+ISK GVEADQDKV SM+              LGLTGYYRRFVKGYGEIAAPLTKLLQKN+FKWDE AT+
Subjt:  MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSMV--------------LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEATV

Query:  AFENLKLAMTTIPVLALPDWSLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHYLLGRKFTIMSDQKALKFLLE
        AFE+LK AM+TIPVLALPDWSLPFM+E DASGSGLGAVLSQN HPI FFSQKLS RAQ+KSIY+RELMAVVLSVQKW+HYLLGR+FTIMSDQKALKFLLE
Subjt:  AFENLKLAMTTIPVLALPDWSLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHYLLGRKFTIMSDQKALKFLLE

Query:  QREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPRL
        QRE+QPQFQKWLTKLLGYDFEILYQPGLQNKAA+AL R+
Subjt:  QREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPRL

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.63.6e-3835.8Show/hide
Query:  MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSM--------------VLGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWD---EE
        +VF  L    L     KC F   +  +LGH+++  G++ + +K+ ++               LGLTGYYR+F+  + +IA P+TK L+KN  K D    E
Subjt:  MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSM--------------VLGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWD---EE

Query:  ATVAFENLKLAMTTIPVLALPDWSLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHYLLGRKFTIMSDQKALKF
           AF+ LK  ++  P+L +PD++  F +  DAS   LGAVLSQ+GHP+++ S+ L+    + S  ++EL+A+V + + ++HYLLGR F I SD + L +
Subjt:  ATVAFENLKLAMTTIPVLALPDWSLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHYLLGRKFTIMSDQKALKF

Query:  LLEQREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPRLK
        L   ++   +  +W  KL  +DF+I Y  G +N  A+AL R+K
Subjt:  LLEQREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPRLK

P10401 Retrovirus-related Pol polyprotein from transposon gypsy1.4e-2932.27Show/hide
Query:  VFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSM--------------VLGLTGYYRRFVKGYGEIAAPLTKLL------------QK
        V   L D  +  +++K  F    ++YLG I+SK G ++D +KV ++               LGL  YYR F+K +  IA P+T +L            +K
Subjt:  VFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSM--------------VLGLTGYYRRFVKGYGEIAAPLTKLL------------QK

Query:  NSFKWDEEATVAFENLKLAMTTIPV-LALPDWSLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHYLLG-RKFT
           +++E    AF+ L+  + +  V L  PD+  PF +  DAS SG+GAVLSQ G PIT  S+ L    Q+ +  +REL+A+V ++ K Q++L G R+  
Subjt:  NSFKWDEEATVAFENLKLAMTTIPV-LALPDWSLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHYLLG-RKFT

Query:  IMSDQKALKFLLEQREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPR
        I +D + L F +  R    + ++W + +  ++ ++ Y+PG +N  A+AL R
Subjt:  IMSDQKALKFLLEQREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPR

P20825 Retrovirus-related Pol polyprotein from transposon 2977.7e-4139.09Show/hide
Query:  MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSMV--------------LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDE---E
        +VF  L D  L     KC F   +  +LGHI++  G++ +  KV ++V              LGLTGYYR+F+  Y +IA P+T  L+K + K D    E
Subjt:  MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSMV--------------LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDE---E

Query:  ATVAFENLKLAMTTIPVLALPDWSLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHYLLGRKFTIMSDQKALKF
           AFE LK  +   P+L LPD+   F++  DAS   LGAVLSQNGHPI+F S+ L+    + S  ++EL+A+V + + ++HYLLGR+F I SD + L++
Subjt:  ATVAFENLKLAMTTIPVLALPDWSLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHYLLGRKFTIMSDQKALKF

Query:  LLEQREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPRLK
        L   +E   + ++W  +L  Y F+I Y  G +N  A+AL R+K
Subjt:  LLEQREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPRLK

P92523 Uncharacterized mitochondrial protein AtMg008602.1e-3054.62Show/hide
Query:  MVFAVLRDNQLYANRKKCVFAHSQIQYLG--HIISKKGVEADQDKVHSMV--------------LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEA
        MV  +   +Q YANRKKC F   QI YLG  HIIS +GV AD  K+ +MV              LGLTGYYRRFVK YG+I  PLT+LL+KNS KW E A
Subjt:  MVFAVLRDNQLYANRKKCVFAHSQIQYLG--HIISKKGVEADQDKVHSMV--------------LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEA

Query:  TVAFENLKLAMTTIPVLALPDWSLPFMVEI
         +AF+ LK A+TT+PVLALPD  LPF+  +
Subjt:  TVAFENLKLAMTTIPVLALPDWSLPFMVEI

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus4.0e-2929.69Show/hide
Query:  MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSM--------------VLGLTGYYRRFVKGYGEIAAPLTKLLQ------------
        +V A L    L  N +K  F  +Q+++LG+I++  G++AD  KV ++               LG+T YYR+F++ Y ++A PLT L +            
Subjt:  MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSM--------------VLGLTGYYRRFVKGYGEIAAPLTKLLQ------------

Query:  KNSFKWDEEATVAFENLKLAMTTIPVLALPDWSLPFMVEIDASGSGLGAVLSQN----GHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHYLLGR
        K     DE A  +F +LK  + +  +LA P ++ PF +  DAS   +GAVLSQ+      PI + S+ L+   ++ +  ++E++A++ S+   + YL G 
Subjt:  KNSFKWDEEATVAFENLKLAMTTIPVLALPDWSLPFMVEIDASGSGLGAVLSQN----GHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHYLLGR

Query:  -KFTIMSDQKALKFLLEQREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPRL
            + +D + L F L  R    + ++W  ++  Y+ E++Y+PG  N  A+AL R+
Subjt:  -KFTIMSDQKALKFLLEQREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPRL

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein1.5e-3154.62Show/hide
Query:  MVFAVLRDNQLYANRKKCVFAHSQIQYLG--HIISKKGVEADQDKVHSMV--------------LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEA
        MV  +   +Q YANRKKC F   QI YLG  HIIS +GV AD  K+ +MV              LGLTGYYRRFVK YG+I  PLT+LL+KNS KW E A
Subjt:  MVFAVLRDNQLYANRKKCVFAHSQIQYLG--HIISKKGVEADQDKVHSMV--------------LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEA

Query:  TVAFENLKLAMTTIPVLALPDWSLPFMVEI
         +AF+ LK A+TT+PVLALPD  LPF+  +
Subjt:  TVAFENLKLAMTTIPVLALPDWSLPFMVEI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTTTGCAGTATTGAGGGATAACCAGTTGTATGCTAATAGAAAAAAATGTGTGTTTGCCCATTCCCAAATACAATATCTAGGCCATATCATATCCAAAAAAGGGGT
GGAAGCCGATCAAGATAAAGTACACAGCATGGTTTTAGGGCTGACTGGGTATTATAGACGTTTTGTCAAAGGTTATGGAGAAATTGCAGCCCCCTTGACCAAATTGTTGC
AGAAAAACTCTTTTAAATGGGATGAAGAAGCCACCGTTGCTTTTGAGAATTTGAAACTGGCTATGACCACAATACCAGTACTGGCACTCCCCGATTGGTCCCTGCCTTTC
ATGGTAGAAATTGATGCGTCAGGTAGCGGATTAGGAGCAGTACTATCACAGAATGGCCACCCCATCACGTTCTTTAGCCAAAAGCTATCGCCAAGGGCTCAATCCAAATC
GATCTACAAAAGAGAATTGATGGCGGTAGTGTTGTCAGTACAAAAATGGCAGCATTATCTCTTGGGAAGAAAGTTCACCATTATGTCGGATCAAAAAGCTTTGAAGTTTC
TGCTGGAACAGAGAGAGATCCAACCACAGTTCCAAAAATGGTTAACCAAGCTTTTGGGGTATGATTTTGAGATTCTGTACCAACCCGGACTACAAAATAAGGCAGCCGAA
GCACTCCCAAGGTTGAAAACTTACCGGAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGTTTGCAGTATTGAGGGATAACCAGTTGTATGCTAATAGAAAAAAATGTGTGTTTGCCCATTCCCAAATACAATATCTAGGCCATATCATATCCAAAAAAGGGGT
GGAAGCCGATCAAGATAAAGTACACAGCATGGTTTTAGGGCTGACTGGGTATTATAGACGTTTTGTCAAAGGTTATGGAGAAATTGCAGCCCCCTTGACCAAATTGTTGC
AGAAAAACTCTTTTAAATGGGATGAAGAAGCCACCGTTGCTTTTGAGAATTTGAAACTGGCTATGACCACAATACCAGTACTGGCACTCCCCGATTGGTCCCTGCCTTTC
ATGGTAGAAATTGATGCGTCAGGTAGCGGATTAGGAGCAGTACTATCACAGAATGGCCACCCCATCACGTTCTTTAGCCAAAAGCTATCGCCAAGGGCTCAATCCAAATC
GATCTACAAAAGAGAATTGATGGCGGTAGTGTTGTCAGTACAAAAATGGCAGCATTATCTCTTGGGAAGAAAGTTCACCATTATGTCGGATCAAAAAGCTTTGAAGTTTC
TGCTGGAACAGAGAGAGATCCAACCACAGTTCCAAAAATGGTTAACCAAGCTTTTGGGGTATGATTTTGAGATTCTGTACCAACCCGGACTACAAAATAAGGCAGCCGAA
GCACTCCCAAGGTTGAAAACTTACCGGAGCTGA
Protein sequenceShow/hide protein sequence
MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSMVLGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEATVAFENLKLAMTTIPVLALPDWSLPF
MVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHYLLGRKFTIMSDQKALKFLLEQREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAE
ALPRLKTYRS