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IVF0009176 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0009176
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr12:15304768..15304920
RNA-Seq ExpressionIVF0009176
SyntenyIVF0009176
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035723.1 retrotransposon protein [Cucumis melo var. makuwa]4.10e-2284Show/hide
Query:  MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTDW
        MTYCDDVD+VDEGDS YA TT +EDI YIEMTNEWSQWR+EL ESMFTDW
Subjt:  MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTDW

KAA0054051.1 retrotransposon protein [Cucumis melo var. makuwa]2.24e-2488Show/hide
Query:  MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTDW
        MTYCDD+DDVDEGDSAYATTT SEDI YIE TNEWSQWR+EL ESMFTDW
Subjt:  MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTDW

KAA0054316.1 retrotransposon protein [Cucumis melo var. makuwa]1.05e-24100Show/hide
Query:  MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTD
        MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTD
Subjt:  MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTD

KAA0066137.1 retrotransposon protein [Cucumis melo var. makuwa]7.13e-2388Show/hide
Query:  MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTDW
        MTYCD+VDDVDEGDSAYATTTT EDI YIEMTNEWSQW N+L ESMFTDW
Subjt:  MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTDW

TYK22655.1 retrotransposon protein [Cucumis melo var. makuwa]3.07e-2286Show/hide
Query:  MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTDW
        MTYCDDVDD DE DS YATTT SEDIQYIE TNEWSQWR+EL ESMFTDW
Subjt:  MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTDW

TrEMBL top hitse value%identityAlignment
A0A5A7T0Z8 Retrotransposon protein5.1e-1790Show/hide
Query:  MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTDW
        MTYCDDVDD DEGDS YATTTTSEDIQYIE TNEWSQWR+EL ESMFTDW
Subjt:  MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTDW

A0A5A7VGD3 Retrotransposon protein6.6e-1788Show/hide
Query:  MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTDW
        MTYCD+VDDVDEGDSAYATTTT EDI YIEMTNEWSQW N+L ESMFTDW
Subjt:  MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTDW

A0A5D3BDZ0 Retrotransposon protein3.9e-1788Show/hide
Query:  MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTDW
        MTYCDD+DDVDEGDSAYATTT SEDI YIE TNEWSQWR+EL ESMFTDW
Subjt:  MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTDW

A0A5D3BQ46 Retrotransposon protein6.6e-1788Show/hide
Query:  MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTDW
        MTYCDDVDDVD+GDS YAT TTSEDIQYIE TNEWSQWR+EL ESMFTDW
Subjt:  MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTDW

A0A5D3CLZ7 Retrotransposon protein4.2e-19100Show/hide
Query:  MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTD
        MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTD
Subjt:  MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATATTGCGATGACGTTGACGACGTGGACGAGGGGGACTCCGCGTACGCGACGACCACCACTTCAGAAGACATCCAATACATTGAGATGACAAACGAGTGGTCTCA
GTGGCGCAACGAACTAACTGAATCGATGTTCACAGATTGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGACATATTGCGATGACGTTGACGACGTGGACGAGGGGGACTCCGCGTACGCGACGACCACCACTTCAGAAGACATCCAATACATTGAGATGACAAACGAGTGGTCTCA
GTGGCGCAACGAACTAACTGAATCGATGTTCACAGATTGGTAG
Protein sequenceShow/hide protein sequence
MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTDW