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IVF0009206 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0009206
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionNon-LTR retroelement reverse transcriptase-like protein
Genome locationchr12:10432896..10433249
RNA-Seq ExpressionIVF0009206
SyntenyIVF0009206
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040927.1 hypothetical protein E6C27_scaffold125G00720 [Cucumis melo var. makuwa]5.39e-2253.85Show/hide
Query:  MHLQRRKGAKLEDFQCSNQQNASEKDSNSDSSFEAKKRSCEGCFPLLRIGHKSFDLRGSYSKEFNLHSMHAPCHVFPRYSSGFHLVGGRTKVRPKTVQKM
        M LQ+RK A+LEDFQCS+ +NASE   +S  S   KKRS  G FPLLRIGHK                          YS G  LVGGR KVR KTVQKM
Subjt:  MHLQRRKGAKLEDFQCSNQQNASEKDSNSDSSFEAKKRSCEGCFPLLRIGHKSFDLRGSYSKEFNLHSMHAPCHVFPRYSSGFHLVGGRTKVRPKTVQKM

Query:  ANTSNKWRTLVGCQKPL
         NTSN+WRTLV CQK L
Subjt:  ANTSNKWRTLVGCQKPL

KAA0057641.1 hypothetical protein E6C27_scaffold43054G00020 [Cucumis melo var. makuwa]1.41e-1359.15Show/hide
Query:  MHLQRRKGAKLEDFQCSNQQNASEKDSNSDSSFEAKKRSCEGCFPLLRIGHKSFDLRGSYSKEFNLHSMHA
        M+LQRRK  +L+DF CS+Q+NAS+   +S  S   KKRS  G F LLRIGHKSFDL+GSY ++FN HS H+
Subjt:  MHLQRRKGAKLEDFQCSNQQNASEKDSNSDSSFEAKKRSCEGCFPLLRIGHKSFDLRGSYSKEFNLHSMHA

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]1.17e-1664.29Show/hide
Query:  LQRRKGAKLEDFQCSNQQNASEKDSNSDSSFEAKKRSCEGCFPLLRIGHKSFDLRGSYSKEFNLHSMHAP
        ++RR  A L+DF+CS+Q+NASE DS+S  S   KK + +G FPLLRIGHKSFDLRGSYS++FN HS HAP
Subjt:  LQRRKGAKLEDFQCSNQQNASEKDSNSDSSFEAKKRSCEGCFPLLRIGHKSFDLRGSYSKEFNLHSMHAP

KAA0065520.1 retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo var. makuwa]2.79e-1849.5Show/hide
Query:  LQRRKGAKLEDFQCSNQQNASEKDSNSDSSFEAKKRSCEGCFPLLRIGHKSFDLRGSYSKEFNLHSMHAPCHVFPRYSSGFHLVGGRTKVRPKTVQKMAN
         Q+ K AKL++F CS+Q++ASE   +S      KKRSC+G   L  +GHK F+L+ SYS++F+LHS   P  VF +Y +G  LV GRTKV+  T++KMAN
Subjt:  LQRRKGAKLEDFQCSNQQNASEKDSNSDSSFEAKKRSCEGCFPLLRIGHKSFDLRGSYSKEFNLHSMHAPCHVFPRYSSGFHLVGGRTKVRPKTVQKMAN

Query:  T
        T
Subjt:  T

TYK22521.1 uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]7.58e-1950.86Show/hide
Query:  HLQRRKGAKLEDFQCSNQQNASEKDSNSDSSFEAKKRSCEGCFPLLRIGHKSFDLRGSYSKEFNLHSMHAPCHVFPRYSSGFHLVGGRTKVRPKTVQKMA
        HL RRK A+LEDF CS+Q+NAS+   +S  S   KKRS +G FPLLR GHK                             G  LVGGRT VR KTVQKMA
Subjt:  HLQRRKGAKLEDFQCSNQQNASEKDSNSDSSFEAKKRSCEGCFPLLRIGHKSFDLRGSYSKEFNLHSMHAPCHVFPRYSSGFHLVGGRTKVRPKTVQKMA

Query:  NTSNKWRTLVGCQKPL
        N SN+WR LV CQKPL
Subjt:  NTSNKWRTLVGCQKPL

TrEMBL top hitse value%identityAlignment
A0A5A7UVV0 Uncharacterized protein1.2e-1159.15Show/hide
Query:  MHLQRRKGAKLEDFQCSNQQNASEKDSNSDSSFEAKKRSCEGCFPLLRIGHKSFDLRGSYSKEFNLHSMHA
        M+LQRRK  +L+DF CS+Q+NAS+   +S  S   KKRS  G F LLRIGHKSFDL+GSY ++FN HS H+
Subjt:  MHLQRRKGAKLEDFQCSNQQNASEKDSNSDSSFEAKKRSCEGCFPLLRIGHKSFDLRGSYSKEFNLHSMHA

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein1.9e-1464.29Show/hide
Query:  LQRRKGAKLEDFQCSNQQNASEKDSNSDSSFEAKKRSCEGCFPLLRIGHKSFDLRGSYSKEFNLHSMHAP
        ++RR  A L+DF+CS+Q+NASE DS+S  S   KK + +G FPLLRIGHKSFDLRGSYS++FN HS HAP
Subjt:  LQRRKGAKLEDFQCSNQQNASEKDSNSDSSFEAKKRSCEGCFPLLRIGHKSFDLRGSYSKEFNLHSMHAP

A0A5A7VEB1 Retrotransposon protein, putative, Ty3-gypsy subclass, expressed7.7e-1650Show/hide
Query:  QRRKGAKLEDFQCSNQQNASEKDSNSDSSFEAKKRSCEGCFPLLRIGHKSFDLRGSYSKEFNLHSMHAPCHVFPRYSSGFHLVGGRTKVRPKTVQKMANT
        Q+ K AKL++F CS+Q++ASE   +S      KKRSC+G   L  +GHK F+L+ SYS++F+LHS   P  VF +Y +G  LV GRTKV+  T++KMANT
Subjt:  QRRKGAKLEDFQCSNQQNASEKDSNSDSSFEAKKRSCEGCFPLLRIGHKSFDLRGSYSKEFNLHSMHAPCHVFPRYSSGFHLVGGRTKVRPKTVQKMANT

A0A5D3CGX3 Uncharacterized protein1.7e-1853.85Show/hide
Query:  MHLQRRKGAKLEDFQCSNQQNASEKDSNSDSSFEAKKRSCEGCFPLLRIGHKSFDLRGSYSKEFNLHSMHAPCHVFPRYSSGFHLVGGRTKVRPKTVQKM
        M LQ+RK A+LEDFQCS+ +NASE   +S  S   KKRS  G FPLLRIGHK                          YS G  LVGGR KVR KTVQKM
Subjt:  MHLQRRKGAKLEDFQCSNQQNASEKDSNSDSSFEAKKRSCEGCFPLLRIGHKSFDLRGSYSKEFNLHSMHAPCHVFPRYSSGFHLVGGRTKVRPKTVQKM

Query:  ANTSNKWRTLVGCQKPL
         NTSN+WRTLV CQK L
Subjt:  ANTSNKWRTLVGCQKPL

A0A5D3DFP2 Uncharacterized protein3.5e-1650.86Show/hide
Query:  HLQRRKGAKLEDFQCSNQQNASEKDSNSDSSFEAKKRSCEGCFPLLRIGHKSFDLRGSYSKEFNLHSMHAPCHVFPRYSSGFHLVGGRTKVRPKTVQKMA
        HL RRK A+LEDF CS+Q+NAS+   +S  S   KKRS +G FPLLR GHK                             G  LVGGRT VR KTVQKMA
Subjt:  HLQRRKGAKLEDFQCSNQQNASEKDSNSDSSFEAKKRSCEGCFPLLRIGHKSFDLRGSYSKEFNLHSMHAPCHVFPRYSSGFHLVGGRTKVRPKTVQKMA

Query:  NTSNKWRTLVGCQKPL
        N SN+WR LV CQKPL
Subjt:  NTSNKWRTLVGCQKPL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACTTGCAACGAAGGAAAGGGGCTAAGCTCGAGGACTTCCAATGTTCGAACCAACAAAATGCGAGCGAGAAAGACTCAAACTCAGATTCCTCGTTCGAAGCTAAAAA
GCGGTCCTGCGAGGGTTGCTTTCCTTTGCTTCGTATTGGTCATAAGTCTTTCGATCTTCGAGGCTCGTACTCCAAGGAGTTCAACCTACACTCCATGCATGCTCCCTGTC
ACGTTTTCCCAAGGTATAGCTCTGGATTCCATCTTGTTGGAGGGAGAACTAAGGTGCGACCGAAAACGGTCCAAAAGATGGCCAATACTTCCAACAAGTGGCGAACGCTC
GTCGGGTGTCAGAAACCACTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCACTTGCAACGAAGGAAAGGGGCTAAGCTCGAGGACTTCCAATGTTCGAACCAACAAAATGCGAGCGAGAAAGACTCAAACTCAGATTCCTCGTTCGAAGCTAAAAA
GCGGTCCTGCGAGGGTTGCTTTCCTTTGCTTCGTATTGGTCATAAGTCTTTCGATCTTCGAGGCTCGTACTCCAAGGAGTTCAACCTACACTCCATGCATGCTCCCTGTC
ACGTTTTCCCAAGGTATAGCTCTGGATTCCATCTTGTTGGAGGGAGAACTAAGGTGCGACCGAAAACGGTCCAAAAGATGGCCAATACTTCCAACAAGTGGCGAACGCTC
GTCGGGTGTCAGAAACCACTCTAA
Protein sequenceShow/hide protein sequence
MHLQRRKGAKLEDFQCSNQQNASEKDSNSDSSFEAKKRSCEGCFPLLRIGHKSFDLRGSYSKEFNLHSMHAPCHVFPRYSSGFHLVGGRTKVRPKTVQKMANTSNKWRTL
VGCQKPL