CuGenDBv2

Gene ID	IVF0009289
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	CDT1-like protein b
Genome location	chr01:5623154..5623743
RNA-Seq Expression	IVF0009289
Synteny	IVF0009289
Gene Ontology terms	GO:0000076 - DNA replication checkpoint (biological process) GO:0000278 - mitotic cell cycle (biological process) GO:0030174 - regulation of DNA-dependent DNA replication initiation (biological process) GO:0071163 - DNA replication preinitiation complex assembly (biological process) GO:0005634 - nucleus (cellular component) GO:0003677 - DNA binding (molecular function) GO:0070182 - DNA polymerase binding (molecular function)
InterPro domains	IPR036390 - Winged helix DNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0043447.1 CDT1-like protein b [Cucumis melo var. makuwa]

2.28e-72

86.16

Show/hide

Query:  MADASKKISSSSSS----TLPFKLKKPLCSNFKSLLEDSQSLSSKTPEKPAELSTRSRNRKVALSIKEVKQAAKSVRESNRQLPLDLATEERKSVRRQID
        MADASKKISSSSSS    TLPFK KKPL SN KSLLED QSLSSKTPEKPAELSTR+RNRKVALSIKEVK+AA SV +SNRQLPL LA EE KSVRRQID
Subjt:  MADASKKISSSSSS----TLPFKLKKPLCSNFKSLLEDSQSLSSKTPEKPAELSTRSRNRKVALSIKEVKQAAKSVRESNRQLPLDLATEERKSVRRQID

Query:  SWSNESQSVENKSRKLPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDR
         WSNESQSV+NKS+K PEKFEMLCKFFYSLDSAMRLLR KGVASNFSNVCPK+EALTDR
Subjt:  SWSNESQSVENKSRKLPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDR

KAA0051017.1 CDT1-like protein b [Cucumis melo var. makuwa]

1.20e-89

100

Show/hide

Query:  MADASKKISSSSSSTLPFKLKKPLCSNFKSLLEDSQSLSSKTPEKPAELSTRSRNRKVALSIKEVKQAAKSVRESNRQLPLDLATEERKSVRRQIDSWSN
        MADASKKISSSSSSTLPFKLKKPLCSNFKSLLEDSQSLSSKTPEKPAELSTRSRNRKVALSIKEVKQAAKSVRESNRQLPLDLATEERKSVRRQIDSWSN
Subjt:  MADASKKISSSSSSTLPFKLKKPLCSNFKSLLEDSQSLSSKTPEKPAELSTRSRNRKVALSIKEVKQAAKSVRESNRQLPLDLATEERKSVRRQIDSWSN

Query:  ESQSVENKSRKLPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDR
        ESQSVENKSRKLPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDR
Subjt:  ESQSVENKSRKLPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDR

XP_008455861.1 PREDICTED: CDT1-like protein b [Cucumis melo]

2.28e-72

86.16

Show/hide

Query:  MADASKKISSSSSS----TLPFKLKKPLCSNFKSLLEDSQSLSSKTPEKPAELSTRSRNRKVALSIKEVKQAAKSVRESNRQLPLDLATEERKSVRRQID
        MADASKKISSSSSS    TLPFK KKPL SN KSLLED QSLSSKTPEKPAELSTR+RNRKVALSIKEVK+AA SV +SNRQLPL LA EE KSVRRQID
Subjt:  MADASKKISSSSSS----TLPFKLKKPLCSNFKSLLEDSQSLSSKTPEKPAELSTRSRNRKVALSIKEVKQAAKSVRESNRQLPLDLATEERKSVRRQID

Query:  SWSNESQSVENKSRKLPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDR
         WSNESQSV+NKS+K PEKFEMLCKFFYSLDSAMRLLR KGVASNFSNVCPK+EALTDR
Subjt:  SWSNESQSVENKSRKLPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDR

XP_008461526.1 PREDICTED: CDT1-like protein b [Cucumis melo]

1.20e-89

100

Show/hide

Query:  MADASKKISSSSSSTLPFKLKKPLCSNFKSLLEDSQSLSSKTPEKPAELSTRSRNRKVALSIKEVKQAAKSVRESNRQLPLDLATEERKSVRRQIDSWSN
        MADASKKISSSSSSTLPFKLKKPLCSNFKSLLEDSQSLSSKTPEKPAELSTRSRNRKVALSIKEVKQAAKSVRESNRQLPLDLATEERKSVRRQIDSWSN
Subjt:  MADASKKISSSSSSTLPFKLKKPLCSNFKSLLEDSQSLSSKTPEKPAELSTRSRNRKVALSIKEVKQAAKSVRESNRQLPLDLATEERKSVRRQIDSWSN

Query:  ESQSVENKSRKLPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDR
        ESQSVENKSRKLPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDR
Subjt:  ESQSVENKSRKLPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDR

XP_031744903.1 uncharacterized protein LOC105436135 isoform X4 [Cucumis sativus]

1.41e-59

73.72

Show/hide

Query:  MADASKKISSSSSSTLPFKLKKPLCSNFKSLLEDSQSLSSKTPEKPAELSTRSRNRKVALSIKEVKQAAKSVRESNRQLPLDLATEERKSVRRQIDSWSN
        MADAS ++SSSSSSTLPFK  KPL SN KSLL+D QSLSSKTPEKPA+LSTR+RN KV+LSIK +K+A +SV ESN  LPLDL TEE KSVRRQID  SN
Subjt:  MADASKKISSSSSSTLPFKLKKPLCSNFKSLLEDSQSLSSKTPEKPAELSTRSRNRKVALSIKEVKQAAKSVRESNRQLPLDLATEERKSVRRQIDSWSN

Query:  ESQSVENKSRKLPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDRY
        ESQSV+NKS+KLPE          + DSAMRLLR KGVASNFSNVCPK+EALTDRY
Subjt:  ESQSVENKSRKLPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDRY

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C211 CDT1-like protein b

1.1e-60

86.16

Show/hide

Query:  MADASKKI----SSSSSSTLPFKLKKPLCSNFKSLLEDSQSLSSKTPEKPAELSTRSRNRKVALSIKEVKQAAKSVRESNRQLPLDLATEERKSVRRQID
        MADASKKI    SSSSSSTLPFK KKPL SN KSLLED QSLSSKTPEKPAELSTR+RNRKVALSIKEVK+AA SV +SNRQLPL LA EE KSVRRQID
Subjt:  MADASKKI----SSSSSSTLPFKLKKPLCSNFKSLLEDSQSLSSKTPEKPAELSTRSRNRKVALSIKEVKQAAKSVRESNRQLPLDLATEERKSVRRQID

Query:  SWSNESQSVENKSRKLPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDR
         WSNESQSV+NKS+K PEKFEMLCKFFYSLDSAMRLLR KGVASNFSNVCPK+EALTDR
Subjt:  SWSNESQSVENKSRKLPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDR

A0A1S3CEP6 CDT1-like protein b

3.7e-74

100

Show/hide

Query:  MADASKKISSSSSSTLPFKLKKPLCSNFKSLLEDSQSLSSKTPEKPAELSTRSRNRKVALSIKEVKQAAKSVRESNRQLPLDLATEERKSVRRQIDSWSN
        MADASKKISSSSSSTLPFKLKKPLCSNFKSLLEDSQSLSSKTPEKPAELSTRSRNRKVALSIKEVKQAAKSVRESNRQLPLDLATEERKSVRRQIDSWSN
Subjt:  MADASKKISSSSSSTLPFKLKKPLCSNFKSLLEDSQSLSSKTPEKPAELSTRSRNRKVALSIKEVKQAAKSVRESNRQLPLDLATEERKSVRRQIDSWSN

Query:  ESQSVENKSRKLPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDR
        ESQSVENKSRKLPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDR
Subjt:  ESQSVENKSRKLPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDR

A0A5A7TNU2 CDT1-like protein b

1.1e-60

86.16

Show/hide

Query:  MADASKKI----SSSSSSTLPFKLKKPLCSNFKSLLEDSQSLSSKTPEKPAELSTRSRNRKVALSIKEVKQAAKSVRESNRQLPLDLATEERKSVRRQID
        MADASKKI    SSSSSSTLPFK KKPL SN KSLLED QSLSSKTPEKPAELSTR+RNRKVALSIKEVK+AA SV +SNRQLPL LA EE KSVRRQID
Subjt:  MADASKKI----SSSSSSTLPFKLKKPLCSNFKSLLEDSQSLSSKTPEKPAELSTRSRNRKVALSIKEVKQAAKSVRESNRQLPLDLATEERKSVRRQID

Query:  SWSNESQSVENKSRKLPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDR
         WSNESQSV+NKS+K PEKFEMLCKFFYSLDSAMRLLR KGVASNFSNVCPK+EALTDR
Subjt:  SWSNESQSVENKSRKLPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDR

A0A5D3BZJ0 CDT1-like protein b

3.7e-74

100

Show/hide

Query:  MADASKKISSSSSSTLPFKLKKPLCSNFKSLLEDSQSLSSKTPEKPAELSTRSRNRKVALSIKEVKQAAKSVRESNRQLPLDLATEERKSVRRQIDSWSN
        MADASKKISSSSSSTLPFKLKKPLCSNFKSLLEDSQSLSSKTPEKPAELSTRSRNRKVALSIKEVKQAAKSVRESNRQLPLDLATEERKSVRRQIDSWSN
Subjt:  MADASKKISSSSSSTLPFKLKKPLCSNFKSLLEDSQSLSSKTPEKPAELSTRSRNRKVALSIKEVKQAAKSVRESNRQLPLDLATEERKSVRRQIDSWSN

Query:  ESQSVENKSRKLPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDR
        ESQSVENKSRKLPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDR
Subjt:  ESQSVENKSRKLPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDR

A0A5D3DKW1 CDT1-like protein b

1.1e-60

86.16

Show/hide

Query:  MADASKKI----SSSSSSTLPFKLKKPLCSNFKSLLEDSQSLSSKTPEKPAELSTRSRNRKVALSIKEVKQAAKSVRESNRQLPLDLATEERKSVRRQID
        MADASKKI    SSSSSSTLPFK KKPL SN KSLLED QSLSSKTPEKPAELSTR+RNRKVALSIKEVK+AA SV +SNRQLPL LA EE KSVRRQID
Subjt:  MADASKKI----SSSSSSTLPFKLKKPLCSNFKSLLEDSQSLSSKTPEKPAELSTRSRNRKVALSIKEVKQAAKSVRESNRQLPLDLATEERKSVRRQID

Query:  SWSNESQSVENKSRKLPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDR
         WSNESQSV+NKS+K PEKFEMLCKFFYSLDSAMRLLR KGVASNFSNVCPK+EALTDR
Subjt:  SWSNESQSVENKSRKLPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDR

SwissProt top hits

e value

%identity

Alignment

Q9M1S9 CDT1-like protein b

6.2e-10

50.75

Show/hide

Query:  KSVRRQIDSWSNESQSVENKSRKLPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDR
        K+V+RQI S S + +SV     KLPE+FE+L +FF  LD+A+RLL+ KG ++ ++N+CPK+E LT+R
Subjt:  KSVRRQIDSWSNESQSVENKSRKLPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDR

Q9SJW9 CDT1-like protein a, chloroplastic

3.2e-14

40.4

Show/hide

Query:  SSSTLPFKLKKPLCSNFKSLLEDS-----QSLSSKTPEKPAE-LSTRSRNRKVALSIKEVKQAAKSVRESNRQLPLDLATEERKSVRRQIDSWSNESQSV
        SS ++PFK KK L  +  S    +      S++  TPEKP E + +RSRNR VALS+KE++QAA S R S  + P+  + + R        S S    S 
Subjt:  SSSTLPFKLKKPLCSNFKSLLEDS-----QSLSSKTPEKPAE-LSTRSRNRKVALSIKEVKQAAKSVRESNRQLPLDLATEERKSVRRQIDSWSNESQSV

Query:  EN-KSRKLPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDR
        +N +  KLPEK+E L KFF +LD++M L + +G    FSN+  ++E LT+R
Subjt:  EN-KSRKLPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDR

Arabidopsis top hits

e value

%identity

Alignment

AT2G31270.1 homolog of yeast CDT1 A

2.3e-15

40.4

Show/hide

Query:  SSSTLPFKLKKPLCSNFKSLLEDS-----QSLSSKTPEKPAE-LSTRSRNRKVALSIKEVKQAAKSVRESNRQLPLDLATEERKSVRRQIDSWSNESQSV
        SS ++PFK KK L  +  S    +      S++  TPEKP E + +RSRNR VALS+KE++QAA S R S  + P+  + + R        S S    S 
Subjt:  SSSTLPFKLKKPLCSNFKSLLEDS-----QSLSSKTPEKPAE-LSTRSRNRKVALSIKEVKQAAKSVRESNRQLPLDLATEERKSVRRQIDSWSNESQSV

Query:  EN-KSRKLPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDR
        +N +  KLPEK+E L KFF +LD++M L + +G    FSN+  ++E LT+R
Subjt:  EN-KSRKLPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDR

AT3G54710.1 homolog of yeast CDT1 B homolog of yeast CDT1 B

4.4e-11

50.75

Show/hide

Query:  KSVRRQIDSWSNESQSVENKSRKLPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDR
        K+V+RQI S S + +SV     KLPE+FE+L +FF  LD+A+RLL+ KG ++ ++N+CPK+E LT+R
Subjt:  KSVRRQIDSWSNESQSVENKSRKLPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGGACGCTTCAAAGAAAATTTCTTCTTCATCCTCATCAACTTTACCCTTCAAATTGAAGAAACCTTTGTGTTCTAACTTCAAATCTTTACTTGAGGATTCACAATC
CTTGAGCTCCAAGACGCCGGAGAAGCCGGCGGAGCTCTCTACCAGATCTAGGAACCGTAAGGTTGCGCTTTCGATCAAGGAGGTTAAACAAGCTGCTAAGAGTGTCCGTG
AATCGAATCGTCAGTTGCCTCTTGATCTGGCTACCGAAGAGAGAAAATCGGTCAGAAGACAGATAGATTCTTGGTCGAATGAAAGTCAGTCGGTTGAAAATAAGTCTAGG
AAATTGCCTGAGAAATTTGAGATGCTTTGTAAGTTCTTTTATAGTTTGGATTCTGCAATGCGGTTGTTGCGATGTAAAGGTGTCGCATCCAACTTCTCTAATGTTTGCCC
TAAGGTCGAAGCCCTCACTGATAGGTACTGA

mRNA sequence

Show/hide mRNA sequence

TAACAATGGCGGACGCTTCAAAGAAAATTTCTTCTTCATCCTCATCAACTTTACCCTTCAAATTGAAGAAACCTTTGTGTTCTAACTTCAAATCTTTACTTGAGGATTCA
CAATCCTTGAGCTCCAAGACGCCGGAGAAGCCGGCGGAGCTCTCTACCAGATCTAGGAACCGTAAGGTTGCGCTTTCGATCAAGGAGGTTAAACAAGCTGCTAAGAGTGT
CCGTGAATCGAATCGTCAGTTGCCTCTTGATCTGGCTACCGAAGAGAGAAAATCGGTCAGAAGACAGATAGATTCTTGGTCGAATGAAAGTCAGTCGGTTGAAAATAAGT
CTAGGAAATTGCCTGAGAAATTTGAGATGCTTTGTAAGTTCTTTTATAGTTTGGATTCTGCAATGCGGTTGTTGCGATGTAAAGGTGTCGCATCCAACTTCTCTAATGTT
TGCCCTAAGGTCGAAGCCCTCACTGATAGGTACTGA

Protein sequence

Show/hide protein sequence

MADASKKISSSSSSTLPFKLKKPLCSNFKSLLEDSQSLSSKTPEKPAELSTRSRNRKVALSIKEVKQAAKSVRESNRQLPLDLATEERKSVRRQIDSWSNESQSVENKSR
KLPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDRY

IVF0009289 (gene) of Melon (IVF77) v1 genome