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IVF0009342 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0009342
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag-pol polyprotein
Genome locationchr11:23556286..23556807
RNA-Seq ExpressionIVF0009342
SyntenyIVF0009342
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033522.1 gag-pol polyprotein [Cucumis melo var. makuwa]7.97e-107100Show/hide
Query:  MEIIREGPSTSRPPVLDGKNYSYWKPRMIFFIETLDGRAWRALVAGYDPPMITMNGVSVPKPEVDWTDAEEQSFVGNARALNAIFNGVDLNVFKLINSCS
        MEIIREGPSTSRPPVLDGKNYSYWKPRMIFFIETLDGRAWRALVAGYDPPMITMNGVSVPKPEVDWTDAEEQSFVGNARALNAIFNGVDLNVFKLINSCS
Subjt:  MEIIREGPSTSRPPVLDGKNYSYWKPRMIFFIETLDGRAWRALVAGYDPPMITMNGVSVPKPEVDWTDAEEQSFVGNARALNAIFNGVDLNVFKLINSCS

Query:  TAKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMTEDELVSDYNKRVLEIANEPLLL
        TAKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMTEDELVSDYNKRVLEIANEPLLL
Subjt:  TAKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMTEDELVSDYNKRVLEIANEPLLL

KAA0053604.1 gag-pol polyprotein [Cucumis melo var. makuwa]4.47e-10689.02Show/hide
Query:  MEIIREGPSTSRPPVLDGKNYSYWKPRMIFFIETLDGRAWRALVAGYDPPMITMNGVSVPKPEVDWTDAEEQSFVGNARALNAIFNGVDLNVFKLINSCS
        MEII+EGPS SRPP+LDGKNYSYWKPRMIFFI+TLDG+AWRAL+AGY+PPMIT+NGVSVPKPEVDWT+AEEQ+ VGNARALNAIFNGVDLNVFKLIN C 
Subjt:  MEIIREGPSTSRPPVLDGKNYSYWKPRMIFFIETLDGRAWRALVAGYDPPMITMNGVSVPKPEVDWTDAEEQSFVGNARALNAIFNGVDLNVFKLINSCS

Query:  TAKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMTEDELVSDYNKRVLEIANEPLLLGEKIFDSKIVRKVL
        TAKEAWKTLEVAYEGTSKVKISRLQLIT KFEA+RMTEDELVSDYNKRVLE ANE LLLGEKI D KIVRKVL
Subjt:  TAKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMTEDELVSDYNKRVLEIANEPLLLGEKIFDSKIVRKVL

KAA0060333.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.25e-10488.44Show/hide
Query:  MEIIREGPSTSRPPVLDGKNYSYWKPRMIFFIETLDGRAWRALVAGYDPPMITMNGVSVPKPEVDWTDAEEQSFVGNARALNAIFNGVDLNVFKLINSCS
        MEIIREGPS SRP +LDGKNY YWKPRMIFFI+TLDG+AWRALVAGY+PPMIT+NGVSVPKPEVDWTDAEEQ+ VGNA+ALN+IFNGVDLN+FKLINS S
Subjt:  MEIIREGPSTSRPPVLDGKNYSYWKPRMIFFIETLDGRAWRALVAGYDPPMITMNGVSVPKPEVDWTDAEEQSFVGNARALNAIFNGVDLNVFKLINSCS

Query:  TAKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMTEDELVSDYNKRVLEIANEPLLLGEKIFDSKIVRKVL
        T KEAWKTLEVAYEGTSKVKIS LQLITSKFEALRMT+DE VSDYNKRVLEIANE LLLGEKI DSKIVRKVL
Subjt:  TAKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMTEDELVSDYNKRVLEIANEPLLLGEKIFDSKIVRKVL

KAA0065373.1 gag-pol polyprotein [Cucumis melo var. makuwa]6.51e-10589.02Show/hide
Query:  MEIIREGPSTSRPPVLDGKNYSYWKPRMIFFIETLDGRAWRALVAGYDPPMITMNGVSVPKPEVDWTDAEEQSFVGNARALNAIFNGVDLNVFKLINSCS
        MEIIREGPS S PPVLDGKNYSYWKPRMIFFI+TLDG+AWRALVAGYDPPMIT NGVSVPKPEVDW D EE +FVGNAR LNAIFNG+DLNVFKLINSC+
Subjt:  MEIIREGPSTSRPPVLDGKNYSYWKPRMIFFIETLDGRAWRALVAGYDPPMITMNGVSVPKPEVDWTDAEEQSFVGNARALNAIFNGVDLNVFKLINSCS

Query:  TAKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMTEDELVSDYNKRVLEIANEPLLLGEKIFDSKIVRKVL
        T KEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMT+DELV DYNKRVLEIANE LLL EKI DSKIV KVL
Subjt:  TAKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMTEDELVSDYNKRVLEIANEPLLLGEKIFDSKIVRKVL

TYK19191.1 gag-pol polyprotein [Cucumis melo var. makuwa]6.34e-10689.02Show/hide
Query:  MEIIREGPSTSRPPVLDGKNYSYWKPRMIFFIETLDGRAWRALVAGYDPPMITMNGVSVPKPEVDWTDAEEQSFVGNARALNAIFNGVDLNVFKLINSCS
        MEII+EGPS SRPP+LDGKNYSYWKP+MIFFI+TLDG+AWRALVAGY+PPMIT+NGVSVPKPEVDWT+AEEQ+ VGNARALNAIFNGVDLNVFKLIN C 
Subjt:  MEIIREGPSTSRPPVLDGKNYSYWKPRMIFFIETLDGRAWRALVAGYDPPMITMNGVSVPKPEVDWTDAEEQSFVGNARALNAIFNGVDLNVFKLINSCS

Query:  TAKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMTEDELVSDYNKRVLEIANEPLLLGEKIFDSKIVRKVL
        TAKEAWKTLEVAYEGTSKVKISRLQLIT KFEA+RMTEDELVSDYNKRVLE ANE LLLGEKI D KIVRKVL
Subjt:  TAKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMTEDELVSDYNKRVLEIANEPLLLGEKIFDSKIVRKVL

TrEMBL top hitse value%identityAlignment
A0A5A7UEG1 Gag-pol polyprotein5.4e-8289.02Show/hide
Query:  MEIIREGPSTSRPPVLDGKNYSYWKPRMIFFIETLDGRAWRALVAGYDPPMITMNGVSVPKPEVDWTDAEEQSFVGNARALNAIFNGVDLNVFKLINSCS
        MEII+EGPS SRPP+LDGKNYSYWKPRMIFFI+TLDG+AWRAL+AGY+PPMIT+NGVSVPKPEVDWT+AEEQ+ VGNARALNAIFNGVDLNVFKLIN C 
Subjt:  MEIIREGPSTSRPPVLDGKNYSYWKPRMIFFIETLDGRAWRALVAGYDPPMITMNGVSVPKPEVDWTDAEEQSFVGNARALNAIFNGVDLNVFKLINSCS

Query:  TAKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMTEDELVSDYNKRVLEIANEPLLLGEKIFDSKIVRKVL
        TAKEAWKTLEVAYEGTSKVKISRLQLIT KFEA+RMTEDELVSDYNKRVLE ANE LLLGEKI D KIVRKVL
Subjt:  TAKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMTEDELVSDYNKRVLEIANEPLLLGEKIFDSKIVRKVL

A0A5A7UJR8 Putative mitochondrial protein7.5e-8491.91Show/hide
Query:  MEIIREGPSTSRPPVLDGKNYSYWKPRMIFFIETLDGRAWRALVAGYDPPMITMNGVSVPKPEVDWTDAEEQSFVGNARALNAIFNGVDLNVFKLINSCS
        MEIIREGPS SRPPVLDGKNYSYWKP+MIFFI+TLDG+AWRALVAGYDPPMIT NGVSVPK EVDWTDAEEQ+ VGNARA NAIFNGVDLN+FKLINSCS
Subjt:  MEIIREGPSTSRPPVLDGKNYSYWKPRMIFFIETLDGRAWRALVAGYDPPMITMNGVSVPKPEVDWTDAEEQSFVGNARALNAIFNGVDLNVFKLINSCS

Query:  TAKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMTEDELVSDYNKRVLEIANEPLLLGEKIFDSKIVRKVL
        TAKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMTEDE V DYNKRVLEIANE LLLGEKI DSKIVRKVL
Subjt:  TAKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMTEDELVSDYNKRVLEIANEPLLLGEKIFDSKIVRKVL

A0A5D3B9V9 Gag-pol polyprotein3.0e-85100Show/hide
Query:  MEIIREGPSTSRPPVLDGKNYSYWKPRMIFFIETLDGRAWRALVAGYDPPMITMNGVSVPKPEVDWTDAEEQSFVGNARALNAIFNGVDLNVFKLINSCS
        MEIIREGPSTSRPPVLDGKNYSYWKPRMIFFIETLDGRAWRALVAGYDPPMITMNGVSVPKPEVDWTDAEEQSFVGNARALNAIFNGVDLNVFKLINSCS
Subjt:  MEIIREGPSTSRPPVLDGKNYSYWKPRMIFFIETLDGRAWRALVAGYDPPMITMNGVSVPKPEVDWTDAEEQSFVGNARALNAIFNGVDLNVFKLINSCS

Query:  TAKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMTEDELVSDYNKRVLEIANEPLLL
        TAKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMTEDELVSDYNKRVLEIANEPLLL
Subjt:  TAKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMTEDELVSDYNKRVLEIANEPLLL

A0A5D3BSP9 Gag-proteinase polyprotein4.9e-8391.33Show/hide
Query:  MEIIREGPSTSRPPVLDGKNYSYWKPRMIFFIETLDGRAWRALVAGYDPPMITMNGVSVPKPEVDWTDAEEQSFVGNARALNAIFNGVDLNVFKLINSCS
        MEIIREGPS SR PVLDGKNYSYWKP+MIFFI+TLDG+AWRALVAGYDPPMIT+NGVSVPKPEVDWTDAEEQ+ VGNARALN IFNGVDLNVFKLINSCS
Subjt:  MEIIREGPSTSRPPVLDGKNYSYWKPRMIFFIETLDGRAWRALVAGYDPPMITMNGVSVPKPEVDWTDAEEQSFVGNARALNAIFNGVDLNVFKLINSCS

Query:  TAKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMTEDELVSDYNKRVLEIANEPLLLGEKIFDSKIVRKVL
        TAKEAWKTLEVA EGTSKVKISRLQLIT KFEALRMTEDE VSDYNKRVLEIANE LLLGEKI DSK+VRKVL
Subjt:  TAKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMTEDELVSDYNKRVLEIANEPLLLGEKIFDSKIVRKVL

A0A5D3D6K4 Gag-pol polyprotein7.0e-8289.02Show/hide
Query:  MEIIREGPSTSRPPVLDGKNYSYWKPRMIFFIETLDGRAWRALVAGYDPPMITMNGVSVPKPEVDWTDAEEQSFVGNARALNAIFNGVDLNVFKLINSCS
        MEII+EGPS SRPP+LDGKNYSYWKP+MIFFI+TLDG+AWRALVAGY+PPMIT+NGVSVPKPEVDWT+AEEQ+ VGNARALNAIFNGVDLNVFKLIN C 
Subjt:  MEIIREGPSTSRPPVLDGKNYSYWKPRMIFFIETLDGRAWRALVAGYDPPMITMNGVSVPKPEVDWTDAEEQSFVGNARALNAIFNGVDLNVFKLINSCS

Query:  TAKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMTEDELVSDYNKRVLEIANEPLLLGEKIFDSKIVRKVL
        TAKEAWKTLEVAYEGTSKVKISRLQLIT KFEA+RMTEDELVSDYNKRVLE ANE LLLGEKI D KIVRKVL
Subjt:  TAKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMTEDELVSDYNKRVLEIANEPLLLGEKIFDSKIVRKVL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATAATCAGAGAGGGACCATCAACTTCTCGTCCTCCTGTTTTAGATGGTAAAAACTACTCATATTGGAAACCTCGGATGATCTTCTTCATTGAGACGTTAGATGG
AAGAGCTTGGAGAGCTCTTGTGGCGGGTTATGATCCTCCTATGATTACCATGAATGGTGTTTCGGTTCCAAAACCTGAAGTTGATTGGACTGATGCTGAAGAGCAATCTT
TTGTTGGGAATGCCAGAGCACTTAACGCGATATTTAATGGTGTTGACCTGAACGTTTTCAAGTTAATAAATTCTTGCAGTACAGCCAAAGAAGCCTGGAAAACCTTGGAG
GTAGCGTATGAAGGTACTTCCAAAGTAAAGATCTCAAGATTACAGTTGATAACGTCTAAGTTTGAGGCATTAAGAATGACCGAGGATGAATTAGTGTCTGATTACAATAA
GAGAGTGCTTGAAATCGCAAATGAACCTTTGCTGCTCGGTGAAAAAATATTTGACTCTAAAATAGTGCGGAAAGTACTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGATAATCAGAGAGGGACCATCAACTTCTCGTCCTCCTGTTTTAGATGGTAAAAACTACTCATATTGGAAACCTCGGATGATCTTCTTCATTGAGACGTTAGATGG
AAGAGCTTGGAGAGCTCTTGTGGCGGGTTATGATCCTCCTATGATTACCATGAATGGTGTTTCGGTTCCAAAACCTGAAGTTGATTGGACTGATGCTGAAGAGCAATCTT
TTGTTGGGAATGCCAGAGCACTTAACGCGATATTTAATGGTGTTGACCTGAACGTTTTCAAGTTAATAAATTCTTGCAGTACAGCCAAAGAAGCCTGGAAAACCTTGGAG
GTAGCGTATGAAGGTACTTCCAAAGTAAAGATCTCAAGATTACAGTTGATAACGTCTAAGTTTGAGGCATTAAGAATGACCGAGGATGAATTAGTGTCTGATTACAATAA
GAGAGTGCTTGAAATCGCAAATGAACCTTTGCTGCTCGGTGAAAAAATATTTGACTCTAAAATAGTGCGGAAAGTACTTTGA
Protein sequenceShow/hide protein sequence
MEIIREGPSTSRPPVLDGKNYSYWKPRMIFFIETLDGRAWRALVAGYDPPMITMNGVSVPKPEVDWTDAEEQSFVGNARALNAIFNGVDLNVFKLINSCSTAKEAWKTLE
VAYEGTSKVKISRLQLITSKFEALRMTEDELVSDYNKRVLEIANEPLLLGEKIFDSKIVRKVL