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IVF0009426 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0009426
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionVQ domain-containing protein
Genome locationchr05:24826710..24827285
RNA-Seq ExpressionIVF0009426
SyntenyIVF0009426
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063579.1 VQ motif-containing protein [Cucumis melo var. makuwa]2.54e-102100Show/hide
Query:  MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPR
        MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPR
Subjt:  MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPR

Query:  DCYGSASGDVLFDDRIEDGDEGRYWRGEMEGSFSGFQASSCVNIW
        DCYGSASGDVLFDDRIEDGDEGRYWRGEMEGSFSGFQASSCVNIW
Subjt:  DCYGSASGDVLFDDRIEDGDEGRYWRGEMEGSFSGFQASSCVNIW

KAE8651551.1 hypothetical protein Csa_019210 [Cucumis sativus]3.92e-7787.76Show/hide
Query:  MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPR
        MEN  TTLP++FHH+KVSQ SNK  TID QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHD   DQSVQDFNH FYPPPPSSS PGVSFDP+
Subjt:  MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPR

Query:  DCYG-SASGDVLFDDRIEDGDEGRYWRGEME-GSFSGFQASSCVNIW
        DCYG SASGDVLFD RIEDGDEGRYWRGEME GSFSGFQASSCVNIW
Subjt:  DCYG-SASGDVLFDDRIEDGDEGRYWRGEME-GSFSGFQASSCVNIW

KAG6586326.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.59e-2953.1Show/hide
Query:  MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPR
        MENL  +LP    H K+  ++ + T     NKPIKVKYISSPMMVKA+NE EFRAIVQKLTGQHS D DA FD+S Q+FNHAF PP    S+   SFD +
Subjt:  MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPR

Query:  DCYGSASGDVLFDDRIEDGDEGRYWRGEMEGSFSGFQASSCVNIW
        DCY   S D     R+          GEM+ S  GFQAS  V++W
Subjt:  DCYGSASGDVLFDDRIEDGDEGRYWRGEMEGSFSGFQASSCVNIW

XP_022938305.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]3.19e-2953.1Show/hide
Query:  MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPR
        MENL  +LP    H K+  ++ + T     NKPIKVKYISSPMMVKANNE EFRAIVQKLTGQHS D DA FD+S Q+FNHAF PP    S+   SFD +
Subjt:  MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPR

Query:  DCYGSASGDVLFDDRIEDGDEGRYWRGEMEGSFSGFQASSCVNIW
        DCY   S D      +          GEM+ S  GFQAS  V++W
Subjt:  DCYGSASGDVLFDDRIEDGDEGRYWRGEMEGSFSGFQASSCVNIW

XP_038877668.1 sigma factor binding protein 1, chloroplastic-like [Benincasa hispida]3.55e-5076.72Show/hide
Query:  QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPRDCYGSASGDVLFDDRIEDGDEGRYWRGEM
        QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSP HDA FDQS +DFN  FYPPP S + P  SFDP+DCY SASGDVLFD           W+GEM
Subjt:  QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPRDCYGSASGDVLFDDRIEDGDEGRYWRGEM

Query:  EGSFSGFQASSCVNIW
        EGSFSGFQASSCVN W
Subjt:  EGSFSGFQASSCVNIW

TrEMBL top hitse value%identityAlignment
A0A0A0LFF9 VQ domain-containing protein3.1e-5987.76Show/hide
Query:  MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPR
        MEN  TTLP++FHH+KVSQ SNK  TID QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHD   DQSVQDFNH FYPPPPSSS PGVSFDP+
Subjt:  MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPR

Query:  DCYG-SASGDVLFDDRIEDGDEGRYWRGEME-GSFSGFQASSCVNIW
        DCYG SASGDVLF DRIEDGDEGRYWRGEME GSFSGFQASSCVNIW
Subjt:  DCYG-SASGDVLFDDRIEDGDEGRYWRGEME-GSFSGFQASSCVNIW

A0A5A7VDH6 VQ motif-containing protein1.8e-78100Show/hide
Query:  MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPR
        MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPR
Subjt:  MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPR

Query:  DCYGSASGDVLFDDRIEDGDEGRYWRGEMEGSFSGFQASSCVNIW
        DCYGSASGDVLFDDRIEDGDEGRYWRGEMEGSFSGFQASSCVNIW
Subjt:  DCYGSASGDVLFDDRIEDGDEGRYWRGEMEGSFSGFQASSCVNIW

A0A6J1CME4 sigma factor binding protein 1, chloroplastic-like2.4e-1955.17Show/hide
Query:  KPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPD--HDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPRDCYGSASGDVLFDDRIEDGDEGRYWRGEM
        KPIKVKYIS+PMMVKAN+ESEFR IVQ+LTGQ+SPD   ++      ++ NHAFYPPPPS++   VS DP+  YG  SG      ++ +  EG + + EM
Subjt:  KPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPD--HDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPRDCYGSASGDVLFDDRIEDGDEGRYWRGEM

Query:  EGSFSGFQASSCVNIW
        +G FSGFQA SCVN +
Subjt:  EGSFSGFQASSCVNIW

A0A6J1FJE0 sigma factor binding protein 1, chloroplastic-like2.4e-2253.1Show/hide
Query:  MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPR
        MENL  +LP    H K+  ++ + T     NKPIKVKYISSPMMVKANNE EFRAIVQKLTGQHS D DA FD+S Q+FNHAF PP    S+   SFD +
Subjt:  MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPR

Query:  DCYGSASGDVLFDDRIEDGDEGRYWRGEMEGSFSGFQASSCVNIW
        DCY   S D      +          GEM+ S  GFQA S V++W
Subjt:  DCYGSASGDVLFDDRIEDGDEGRYWRGEMEGSFSGFQASSCVNIW

W9RT96 VQ domain-containing protein2.3e-0937.34Show/hide
Query:  SQNSNKPTTIDQ------QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHS--------PDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPRDCY
        SQ  N P    Q      + KPIK+KYISSPMMV+ANN SEFRAIVQ+LTG++S          HD + +++   F+ +          PG S    D +
Subjt:  SQNSNKPTTIDQ------QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHS--------PDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPRDCY

Query:  GSASGD-VLFDDRIED------------------GDEGRYWRGEMEGSFSGFQASSCV
           S D  L DDR  D                   + G +WR E+  SF+GFQ SSC+
Subjt:  GSASGD-VLFDDRIED------------------GDEGRYWRGEMEGSFSGFQASSCV

SwissProt top hitse value%identityAlignment
Q9LDH1 Sigma factor binding protein 1, chloroplastic2.1e-0432.28Show/hide
Query:  SQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPRDCYGSASGDVLFDDRIE
        S    K TT    NKPIKV+YIS+PM V+    S+FR +VQ+LTGQ + D       S    +H   PP  + +   +  +P   +G    D       E
Subjt:  SQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPRDCYGSASGDVLFDDRIE

Query:  DGDEGRYWRGEMEGSFSGFQASSCVNI
        D     +   +M   FSGF ++   N+
Subjt:  DGDEGRYWRGEMEGSFSGFQASSCVNI

Arabidopsis top hitse value%identityAlignment
AT3G56710.1 sigma factor binding protein 11.5e-0532.28Show/hide
Query:  SQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPRDCYGSASGDVLFDDRIE
        S    K TT    NKPIKV+YIS+PM V+    S+FR +VQ+LTGQ + D       S    +H   PP  + +   +  +P   +G    D       E
Subjt:  SQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPRDCYGSASGDVLFDDRIE

Query:  DGDEGRYWRGEMEGSFSGFQASSCVNI
        D     +   +M   FSGF ++   N+
Subjt:  DGDEGRYWRGEMEGSFSGFQASSCVNI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAATTTGATCACAACCCTTCCAACTGATTTTCATCATAGAAAAGTTAGCCAAAATTCCAACAAACCAACCACAATTGATCAACAAAACAAGCCCATCAAAGTGAA
GTACATTTCTAGTCCCATGATGGTTAAAGCCAATAACGAGTCAGAATTTCGAGCCATAGTTCAAAAACTCACTGGCCAGCACTCTCCTGATCATGATGCTAATTTTGATC
AATCAGTTCAAGATTTTAACCACGCTTTTTATCCGCCACCACCCTCGTCCTCCACCCCCGGGGTTTCTTTCGATCCTAGGGATTGTTATGGTTCGGCCTCCGGTGATGTA
CTCTTCGACGACCGGATTGAGGACGGTGATGAAGGACGGTACTGGCGAGGTGAAATGGAAGGTTCTTTTTCTGGGTTTCAAGCTTCTTCTTGTGTGAATATATGGTGA
mRNA sequenceShow/hide mRNA sequence
CTTCCTTTCCCAATTTTTCCTCTCTTTTCTTTATGGAGAATTTGATCACAACCCTTCCAACTGATTTTCATCATAGAAAAGTTAGCCAAAATTCCAACAAACCAACCACA
ATTGATCAACAAAACAAGCCCATCAAAGTGAAGTACATTTCTAGTCCCATGATGGTTAAAGCCAATAACGAGTCAGAATTTCGAGCCATAGTTCAAAAACTCACTGGCCA
GCACTCTCCTGATCATGATGCTAATTTTGATCAATCAGTTCAAGATTTTAACCACGCTTTTTATCCGCCACCACCCTCGTCCTCCACCCCCGGGGTTTCTTTCGATCCTA
GGGATTGTTATGGTTCGGCCTCCGGTGATGTACTCTTCGACGACCGGATTGAGGACGGTGATGAAGGACGGTACTGGCGAGGTGAAATGGAAGGTTCTTTTTCTGGGTTT
CAAGCTTCTTCTTGTGTGAATATATGGTGATGGAGATGAAGAAGAGGAAAAGTTTATGGATGATGAGTAGTGACATCATGGCTTTTTTAGCTTTAAAGTATAGTTTTTGT
CGGACTTTGTATTTAGTATGTGCAAG
Protein sequenceShow/hide protein sequence
MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPRDCYGSASGDV
LFDDRIEDGDEGRYWRGEMEGSFSGFQASSCVNIW