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IVF0009428 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0009428
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description30S ribosomal protein S11, chloroplastic
Genome locationchr09:4028813..4030757
RNA-Seq ExpressionIVF0009428
SyntenyIVF0009428
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0003824 - catalytic activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR001971 - Ribosomal protein S11
IPR036603 - RNA polymerase, RBP11-like subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF1866200.1 hypothetical protein Lal_00024198 [Lupinus albus]2.77e-3237.6Show/hide
Query:  INDVMGQSISWSFAGTCGFKGTRRGTPFAV----------VVDQRMQRAEVMIKGLGLGRDATLRAIWTSG-----------------------------
        + DV G+ ISWS AGTCGFKGTRRGTPFA           V DQ MQRAEVMIKG GLGRDA LRAI  SG                             
Subjt:  INDVMGQSISWSFAGTCGFKGTRRGTPFAV----------VVDQRMQRAEVMIKGLGLGRDATLRAIWTSG-----------------------------

Query:  -----------------ILFS------------------FIR------------------------------------------------------DDAS
                         IL +                  F++                                                       D S
Subjt:  -----------------ILFS------------------FIR------------------------------------------------------DDAS

Query:  YPMDAIFMSVRNVNHSIHSYINGNEKQGRLFLEIWTNGSFTPKEALHETS
        YP+D +FMSVRNVNHSIHSY+NGNEKQ  LFLEIWTNGS TPKEAL E S
Subjt:  YPMDAIFMSVRNVNHSIHSYINGNEKQGRLFLEIWTNGSFTPKEALHETS

KAF1876904.1 hypothetical protein Lal_00033201 [Lupinus albus]1.42e-3238Show/hide
Query:  INDVMGQSISWSFAGTCGFKGTRRGTPFAV----------VVDQRMQRAEVMIKGLGLGRDATLRAIWTSG-----------------------------
        + DV G+ ISWS AGTCGFKGTRRGTPFA           V DQ MQRAEVMIKG GLGRDA LRAI  SG                             
Subjt:  INDVMGQSISWSFAGTCGFKGTRRGTPFAV----------VVDQRMQRAEVMIKGLGLGRDATLRAIWTSG-----------------------------

Query:  -----------------ILFS------------------FIR------------------------------------------------------DDAS
                         IL +                  F++                                                       D S
Subjt:  -----------------ILFS------------------FIR------------------------------------------------------DDAS

Query:  YPMDAIFMSVRNVNHSIHSYINGNEKQGRLFLEIWTNGSFTPKEALHETS
        YP+DA+FMSVRNVNHSIHSY+NGNEKQ  LFLEIWTNGS TPKEAL E S
Subjt:  YPMDAIFMSVRNVNHSIHSYINGNEKQGRLFLEIWTNGSFTPKEALHETS

OIV92917.1 hypothetical protein TanjilG_00094 [Lupinus angustifolius]7.09e-4249.47Show/hide
Query:  INDVMGQSISWSFAGTCGFKGTRRGTPFAV----------VVDQRMQRAEVMIKGLGLGRDATLRAIWTSG-----------ILFSFIR-----------
        + DV G+ ISWS AGTCGFKGTRRGTPFA           V DQ MQRAEVMIKG GLGRDA LRAI  SG           +L   I            
Subjt:  INDVMGQSISWSFAGTCGFKGTRRGTPFAV----------VVDQRMQRAEVMIKGLGLGRDATLRAIWTSG-----------ILFSFIR-----------

Query:  ----------------------------------DDASYPMDAIFMSVRNVNHSIHSYINGNEKQGRLFLEIWTNGSFTPKEALHETS
                                           D SYP+DA+FMSVRN NHSIHSY+NGNEKQ  LFLEIWTNGS TPKEAL E S
Subjt:  ----------------------------------DDASYPMDAIFMSVRNVNHSIHSYINGNEKQGRLFLEIWTNGSFTPKEALHETS

QCD86010.1 DNA-directed RNA polymerase subunit alpha [Vigna unguiculata]1.40e-3135.58Show/hide
Query:  INDVMGQSISWSFAGTCGFKGTRRGTPFAV----------VVDQRMQRAEVMIKGLGLGRDATLRAIWTSGILFSFIRD---------------------
        I DV G+ ISWS AGTCGFKGTRRGTPFA           V DQ MQRAE+MIKG GLGRDA LRAI  SGIL +FIRD                     
Subjt:  INDVMGQSISWSFAGTCGFKGTRRGTPFAV----------VVDQRMQRAEVMIKGLGLGRDATLRAIWTSGILFSFIRD---------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --------------DASYPMDAIFMSVRNVNHSIHSYINGNEKQGRLFLEIWTNGSFTPKEALHETS
                      D SY +DA FM VRNVN+SIHSY+NGNEKQ  LFLEIWTNGS TPKEAL+E S
Subjt:  --------------DASYPMDAIFMSVRNVNHSIHSYINGNEKQGRLFLEIWTNGSFTPKEALHETS

RZC57990.1 hypothetical protein C5167_005295 [Papaver somniferum]6.33e-3643.6Show/hide
Query:  INDVMGQSISWSFAGTCGFKGTRRGTPFAV----------VVDQRMQRAEVMIKGLGLGRDATLRAIWTSGILFSF------------------IRD---
        + DV G+ +SWS AGTCGF+GTRRGTPFA           VVDQ MQRAEVMIKG GLGRDA LRAI  SGI  S                    RD   
Subjt:  INDVMGQSISWSFAGTCGFKGTRRGTPFAV----------VVDQRMQRAEVMIKGLGLGRDATLRAIWTSGILFSF------------------IRD---

Query:  ----------------------------------------------------------DASYPMDAIFMSVRNVNHSIHSYINGNEKQGRLFLEIWTNGS
                                                                  D S+ +DA+FM VRN NHSIHSY NGNEKQ  LFLEIWTNGS
Subjt:  ----------------------------------------------------------DASYPMDAIFMSVRNVNHSIHSYINGNEKQGRLFLEIWTNGS

Query:  FTPKEALHETS
         TPKEALHE S
Subjt:  FTPKEALHETS

TrEMBL top hitse value%identityAlignment
A0A1J7FXT1 Uncharacterized protein5.9e-3449.47Show/hide
Query:  INDVMGQSISWSFAGTCGFKGTRRGTPFA----------VVVDQRMQRAEVMIKGLGLGRDATLRAIWTSG-----------ILFSFIR-----------
        + DV G+ ISWS AGTCGFKGTRRGTPFA           V DQ MQRAEVMIKG GLGRDA LRAI  SG           +L   I            
Subjt:  INDVMGQSISWSFAGTCGFKGTRRGTPFA----------VVVDQRMQRAEVMIKGLGLGRDATLRAIWTSG-----------ILFSFIR-----------

Query:  ----------------------------------DDASYPMDAIFMSVRNVNHSIHSYINGNEKQGRLFLEIWTNGSFTPKEALHETS
                                           D SYP+DA+FMSVRN NHSIHSY+NGNEKQ  LFLEIWTNGS TPKEAL E S
Subjt:  ----------------------------------DDASYPMDAIFMSVRNVNHSIHSYINGNEKQGRLFLEIWTNGSFTPKEALHETS

A0A4D6LC09 Plastid-encoded RNA polymerase subunit alpha2.0e-2635.58Show/hide
Query:  INDVMGQSISWSFAGTCGFKGTRRGTPFA----------VVVDQRMQRAEVMIKGLGLGRDATLRAIWTSGILFSFIRD---------------------
        I DV G+ ISWS AGTCGFKGTRRGTPFA           V DQ MQRAE+MIKG GLGRDA LRAI  SGIL +FIRD                     
Subjt:  INDVMGQSISWSFAGTCGFKGTRRGTPFA----------VVVDQRMQRAEVMIKGLGLGRDATLRAIWTSGILFSFIRD---------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --------------DASYPMDAIFMSVRNVNHSIHSYINGNEKQGRLFLEIWTNGSFTPKEALHETS
                      D SY +DA FM VRNVN+SIHSY+NGNEKQ  LFLEIWTNGS TPKEAL+E S
Subjt:  --------------DASYPMDAIFMSVRNVNHSIHSYINGNEKQGRLFLEIWTNGSFTPKEALHETS

A0A4Y7JDB8 S1-like domain-containing protein5.2e-3043.6Show/hide
Query:  INDVMGQSISWSFAGTCGFKGTRRGTPFA----------VVVDQRMQRAEVMIKGLGLGRDATLRAIWTSGILFSF------------------IRD---
        + DV G+ +SWS AGTCGF+GTRRGTPFA           VVDQ MQRAEVMIKG GLGRDA LRAI  SGI  S                    RD   
Subjt:  INDVMGQSISWSFAGTCGFKGTRRGTPFA----------VVVDQRMQRAEVMIKGLGLGRDATLRAIWTSGILFSF------------------IRD---

Query:  ----------------------------------------------------------DASYPMDAIFMSVRNVNHSIHSYINGNEKQGRLFLEIWTNGS
                                                                  D S+ +DA+FM VRN NHSIHSY NGNEKQ  LFLEIWTNGS
Subjt:  ----------------------------------------------------------DASYPMDAIFMSVRNVNHSIHSYINGNEKQGRLFLEIWTNGS

Query:  FTPKEALHETS
         TPKEALHE S
Subjt:  FTPKEALHETS

A0A6A5M3G7 Plastid-encoded RNA polymerase subunit alpha7.0e-2737.6Show/hide
Query:  INDVMGQSISWSFAGTCGFKGTRRGTPFA----------VVVDQRMQRAEVMIKGLGLGRDATLRAIWTSG-----------------------------
        + DV G+ ISWS AGTCGFKGTRRGTPFA           V DQ MQRAEVMIKG GLGRDA LRAI  SG                             
Subjt:  INDVMGQSISWSFAGTCGFKGTRRGTPFA----------VVVDQRMQRAEVMIKGLGLGRDATLRAIWTSG-----------------------------

Query:  -----------------ILFS------------------FIR------------------------------------------------------DDAS
                         IL +                  F++                                                       D S
Subjt:  -----------------ILFS------------------FIR------------------------------------------------------DDAS

Query:  YPMDAIFMSVRNVNHSIHSYINGNEKQGRLFLEIWTNGSFTPKEALHETS
        YP+D +FMSVRNVNHSIHSY+NGNEKQ  LFLEIWTNGS TPKEAL E S
Subjt:  YPMDAIFMSVRNVNHSIHSYINGNEKQGRLFLEIWTNGSFTPKEALHETS

A0A6A5MQ34 Plastid-encoded RNA polymerase subunit alpha4.1e-2738Show/hide
Query:  INDVMGQSISWSFAGTCGFKGTRRGTPFA----------VVVDQRMQRAEVMIKGLGLGRDATLRAIWTSG-----------------------------
        + DV G+ ISWS AGTCGFKGTRRGTPFA           V DQ MQRAEVMIKG GLGRDA LRAI  SG                             
Subjt:  INDVMGQSISWSFAGTCGFKGTRRGTPFA----------VVVDQRMQRAEVMIKGLGLGRDATLRAIWTSG-----------------------------

Query:  -----------------ILFS------------------FIR------------------------------------------------------DDAS
                         IL +                  F++                                                       D S
Subjt:  -----------------ILFS------------------FIR------------------------------------------------------DDAS

Query:  YPMDAIFMSVRNVNHSIHSYINGNEKQGRLFLEIWTNGSFTPKEALHETS
        YP+DA+FMSVRNVNHSIHSY+NGNEKQ  LFLEIWTNGS TPKEAL E S
Subjt:  YPMDAIFMSVRNVNHSIHSYINGNEKQGRLFLEIWTNGSFTPKEALHETS

SwissProt top hitse value%identityAlignment
A0ZZ68 30S ribosomal protein S11, chloroplastic6.5e-2266.67Show/hide
Query:  INDVMGQSISWSFAGTCGFKGTRRGTPFA----------VVVDQRMQRAEVMIKGLGLGRDATLRAIWTSGILFSFIRDDASYP
        + DV G+ ISWS AGTCGFKGTRRGTPFA           VVDQ MQRAEVMIKG GLGRDA LRAI  SGIL SF+RD    P
Subjt:  INDVMGQSISWSFAGTCGFKGTRRGTPFA----------VVVDQRMQRAEVMIKGLGLGRDATLRAIWTSGILFSFIRDDASYP

A8SED6 30S ribosomal protein S11, chloroplastic6.5e-2265.48Show/hide
Query:  INDVMGQSISWSFAGTCGFKGTRRGTPFA----------VVVDQRMQRAEVMIKGLGLGRDATLRAIWTSGILFSFIRDDASYP
        + DV GQ +SWS AGTCGF+GTRRGTPFA           VVDQ MQRAEVMIKG GLGRDA LRAI  SGIL SF+RD    P
Subjt:  INDVMGQSISWSFAGTCGFKGTRRGTPFA----------VVVDQRMQRAEVMIKGLGLGRDATLRAIWTSGILFSFIRDDASYP

Q0G9I6 30S ribosomal protein S11, chloroplastic2.9e-2265.48Show/hide
Query:  INDVMGQSISWSFAGTCGFKGTRRGTPFA----------VVVDQRMQRAEVMIKGLGLGRDATLRAIWTSGILFSFIRDDASYP
        + DV+GQ +SWS AGTCGF+GTRRGTPFA           VVDQ MQRAEVMIKG GLGRDA LRAI  SGIL SF+RD    P
Subjt:  INDVMGQSISWSFAGTCGFKGTRRGTPFA----------VVVDQRMQRAEVMIKGLGLGRDATLRAIWTSGILFSFIRDDASYP

Q2L937 30S ribosomal protein S11, chloroplastic6.5e-2266.67Show/hide
Query:  INDVMGQSISWSFAGTCGFKGTRRGTPFA----------VVVDQRMQRAEVMIKGLGLGRDATLRAIWTSGILFSFIRDDASYP
        + DV G+ ISWS AGTCGFKGTRRGTPFA           VVDQ MQRAEVMIKG GLGRDA LRAI  SGIL SF+RD    P
Subjt:  INDVMGQSISWSFAGTCGFKGTRRGTPFA----------VVVDQRMQRAEVMIKGLGLGRDATLRAIWTSGILFSFIRDDASYP

Q4VZK2 30S ribosomal protein S11, chloroplastic5.0e-2267.86Show/hide
Query:  INDVMGQSISWSFAGTCGFKGTRRGTPFAV----------VVDQRMQRAEVMIKGLGLGRDATLRAIWTSGILFSFIRDDASYP
        + DV G+ ISWS AGTCGFKGTRRGTPFA           VVDQ MQRAEVMIKG GLGRDA LRAI  SGIL SFIRD    P
Subjt:  INDVMGQSISWSFAGTCGFKGTRRGTPFAV----------VVDQRMQRAEVMIKGLGLGRDATLRAIWTSGILFSFIRDDASYP

Arabidopsis top hitse value%identityAlignment
ATCG00740.1 RNA polymerase subunit alpha5.3e-1975.93Show/hide
Query:  DDASYPMDAIFMSVRNVNHSIHSYINGNEKQGRLFLEIWTNGSFTPKEALHETS
        +D SYP+DA+FM V N NHSIHSY NGNEKQ  LFLEIWTNGS TPKEALH+ S
Subjt:  DDASYPMDAIFMSVRNVNHSIHSYINGNEKQGRLFLEIWTNGSFTPKEALHETS

ATCG00750.1 ribosomal protein S115.1e-2264.29Show/hide
Query:  INDVMGQSISWSFAGTCGFKGTRRGTPFA----------VVVDQRMQRAEVMIKGLGLGRDATLRAIWTSGILFSFIRDDASYP
        + DV G+ ISWS AGTCGF+GTRRGTPFA           VVDQ MQRAEV IKG GLGRDA LRAI  SGIL SF+RD    P
Subjt:  INDVMGQSISWSFAGTCGFKGTRRGTPFA----------VVVDQRMQRAEVMIKGLGLGRDATLRAIWTSGILFSFIRDDASYP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGATTGTAATTCTTTCTACTTCTCCGTGTATAATGACAGATCAAGAAGCTCGACTACAGGGAATCAACGATGTAATGGGTCAATCAATTTCTTGGTCCTTCGCCGG
TACGTGTGGATTCAAAGGTACAAGAAGAGGGACACCATTTGCCGTAGTAGTTGATCAAAGGATGCAACGAGCTGAAGTTATGATAAAGGGCCTCGGTCTCGGAAGAGATG
CAACATTAAGAGCTATTTGGACGAGCGGTATACTATTCAGTTTCATACGGGATGACGCAAGTTATCCTATGGATGCTATATTCATGTCTGTTCGAAATGTTAATCATAGT
ATTCATTCTTATATAAATGGGAATGAAAAACAAGGTAGACTTTTTCTCGAAATATGGACCAATGGAAGTTTCACTCCTAAAGAAGCACTTCATGAAACCTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGATTGTAATTCTTTCTACTTCTCCGTGTATAATGACAGATCAAGAAGCTCGACTACAGGGAATCAACGATGTAATGGGTCAATCAATTTCTTGGTCCTTCGCCGG
TACGTGTGGATTCAAAGGTACAAGAAGAGGGACACCATTTGCCGTAGTAGTTGATCAAAGGATGCAACGAGCTGAAGTTATGATAAAGGGCCTCGGTCTCGGAAGAGATG
CAACATTAAGAGCTATTTGGACGAGCGGTATACTATTCAGTTTCATACGGGATGACGCAAGTTATCCTATGGATGCTATATTCATGTCTGTTCGAAATGTTAATCATAGT
ATTCATTCTTATATAAATGGGAATGAAAAACAAGGTAGACTTTTTCTCGAAATATGGACCAATGGAAGTTTCACTCCTAAAGAAGCACTTCATGAAACCTCTTGA
Protein sequenceShow/hide protein sequence
MGIVILSTSPCIMTDQEARLQGINDVMGQSISWSFAGTCGFKGTRRGTPFAVVVDQRMQRAEVMIKGLGLGRDATLRAIWTSGILFSFIRDDASYPMDAIFMSVRNVNHS
IHSYINGNEKQGRLFLEIWTNGSFTPKEALHETS