CuGenDBv2

Gene ID	IVF0009429
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	RRM domain-containing protein
Genome location	chr03:3476278..3481062
RNA-Seq Expression	IVF0009429
Synteny	IVF0009429
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004138411.1 uncharacterized protein LOC101221287 [Cucumis sativus]

6.59e-129

93.97

Show/hide

Query:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE
        MGS KDEQF+MFEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVV+VHFIPNYTEPINSSQCALVEMKDSKEAKSVI VIAQFPFMMSGMPRPVRARPAE
Subjt:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE

Query:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD
         EMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRL+KKHVAEAAFL+KQH+AEEEKLAKQQQETL+GNYKKYEIVDSVMADGTARRLAK+YNMR+SDD
Subjt:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD

XP_008441485.1 PREDICTED: uncharacterized protein LOC103485592 [Cucumis melo]

2.23e-136

100

Show/hide

Query:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE
        MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE
Subjt:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE

Query:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD
        AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD
Subjt:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD

XP_023004840.1 uncharacterized protein LOC111498019 [Cucurbita maxima]

8.09e-114

82.91

Show/hide

Query:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE
        MGSA DEQ++ FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV+VHFIPN+TEPINSSQCALVEMKDSKEA SVI+VI+QFPFMMSGMPRPVRA PAE
Subjt:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE

Query:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD
         EMFDDRP+KPGRKISF WL  +DPDFEVA+++K LT++HVAEAAFLLKQ L EEEKLAKQQQ+ L+GNYKKYEI++ VM DGTARRLA+ YNMRV+DD
Subjt:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD

XP_023514768.1 uncharacterized protein LOC111778981 [Cucurbita pepo subsp. pepo]

1.99e-114

83.92

Show/hide

Query:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE
        MGSA DEQ++ FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV+VHFIPN+TEPINSSQCALVEMKDSKEA SVI+VIAQFPFMMSGMPRPVRA PAE
Subjt:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE

Query:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD
         EMFDDRP+KPGRKISF WL  DDPDFEVA+++K LT++HVAEAAFLLKQ L EEEKLAKQQQ+ L+ NYKKYEIV+ VM DGTARRLA+ YNMRV+DD
Subjt:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD

XP_038886330.1 uncharacterized protein LOC120076542 [Benincasa hispida]

4.09e-123

89.95

Show/hide

Query:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE
        MGS KDEQF+MFEEKVKRTVYVDNLSP VTEPVLRTALDQFGTVV+VHFIPNYTEPIN+SQCALVEMKD KEAKSVI+VIAQFPFMMSGMPRPVRARPAE
Subjt:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE

Query:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD
         EMFDDRPVKPGRKISF WLE DDPDFEVA+++K LT+KHVAEAAFLLK HLAEEEKLAKQQQE L+GNYKKYEIV+SVMADGTARRLAK YNMRVSDD
Subjt:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAE7 RRM domain-containing protein

1.5e-99

93.97

Show/hide

Query:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE
        MGS KDEQF+MFEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVV+VHFIPNYTEPINSSQCALVEMKDSKEAKSVI VIAQFPFMMSGMPRPVRARPAE
Subjt:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE

Query:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD
         EMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRL+KKHVAEAAFL+KQH+AEEEKLAKQQQETL+GNYKKYEIVDSVMADGTARRLAK+YNMR+SDD
Subjt:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD

A0A1S3B3J3 uncharacterized protein LOC103485592

3.0e-105

100

Show/hide

Query:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE
        MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE
Subjt:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE

Query:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD
        AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD
Subjt:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD

A0A6J1DB90 uncharacterized protein LOC111018537

1.0e-84

80.4

Show/hide

Query:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE
        MGSA +EQF+ FEEKVKRTVYVDNLSPQVTEPV+RTALDQFGTVV V FIPNY EP+NSSQCALVEMKD KEAKSVI+VIA+FPFM+SGMPRPVRARPAE
Subjt:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE

Query:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD
         EMFDDRP+KPG KISF WL+ +DPDF+VA+++K  T+KH AE AFLLKQ L EEEKLAKQQQE L+GNYKK+EIV+SVM DGTARRLAK Y+MRV DD
Subjt:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD

A0A6J1H6P8 uncharacterized protein LOC111460615

7.5e-88

83.42

Show/hide

Query:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE
        MGSA DEQ+  FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV+VHFIPN+TEPINSSQCALVEMKDSKEA SVI++IAQFPFMMSGMPRPVRA PAE
Subjt:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE

Query:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD
         EMFDDRP+KPGRKISF WL  DDPDFEVA+++K LT++HVAEAAFLLKQ L EEEKLAKQQQ+ L+ NYKKYEIV+ VM DGTARRLA+ YNMRV+DD
Subjt:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD

A0A6J1KVQ1 uncharacterized protein LOC111498019

4.4e-88

82.91

Show/hide

Query:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE
        MGSA DEQ++ FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV+VHFIPN+TEPINSSQCALVEMKDSKEA SVI+VI+QFPFMMSGMPRPVRA PAE
Subjt:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE

Query:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD
         EMFDDRP+KPGRKISF WL  +DPDFEVA+++K LT++HVAEAAFLLKQ L EEEKLAKQQQ+ L+GNYKKYEI++ VM DGTARRLA+ YNMRV+DD
Subjt:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G05970.1 RNA-binding (RRM/RBD/RNP motifs) family protein

4.0e-49

48.72

Show/hide

Query:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE
        M + ++  +  F E+V+RTVYVD L+P  T PV+ +A +QFGTV  V FIPNY  P       LVEM++ +  ++VI+ ++Q PFM++GMPRPVRA  AE
Subjt:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE

Query:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMR
          MF D+P KPGR + FRW++ +DPDF+ AR++KRL +KH AE +F+LK  L E EKL+KQQ ET   ++KK+E++D ++ DG A++LA  Y+++
Subjt:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMR

AT1G05970.2 RNA-binding (RRM/RBD/RNP motifs) family protein

1.2e-50

48.72

Show/hide

Query:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE
        M + ++  +  F E+V+RTVYVD L+P  T PV+ +A +QFGTV  V FIPNY  P       LVEM++ +  ++VI+ ++Q PFM++GMPRPVRA  AE
Subjt:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE

Query:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMR
          MF D+P KPGR + FRW++ +DPDF+ AR++KRL +KH AE +F+LK+ L E EKL+KQQ ET   ++KK+E++D ++ DG A++LA  Y+++
Subjt:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGATCGGCGAAGGATGAGCAATTTTCCATGTTTGAGGAGAAGGTAAAACGGACTGTGTATGTTGATAATCTCTCTCCTCAAGTAACTGAGCCTGTTTTGAGAACTGC
TTTAGATCAGTTTGGGACTGTGGTCAATGTCCATTTTATTCCAAATTACACGGAGCCAATTAATAGCTCTCAATGTGCTCTAGTGGAGATGAAGGATTCGAAGGAGGCGA
AATCTGTGATCGCCGTTATAGCTCAATTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCTCGCCCTGCCGAAGCAGAAATGTTTGATGATCGTCCTGTAAAG
CCTGGTAGGAAGATTAGCTTTAGATGGCTGGAAAGTGATGATCCTGATTTTGAAGTGGCCAGACAAATCAAGCGTCTTACGAAGAAACATGTGGCTGAAGCTGCATTTTT
GCTCAAGCAACATTTGGCGGAAGAGGAAAAGCTTGCAAAGCAGCAACAAGAAACGCTGAGAGGAAACTACAAGAAATATGAGATTGTAGATAGTGTAATGGCCGATGGAA
CTGCCCGCAGGTTAGCAAAAAATTATAATATGCGAGTTTCAGATGATTAA

mRNA sequence

Show/hide mRNA sequence

CCTAAATAACGTTTCCCTTTTCCACGATTTTTCTCTCTCGTCCTCCCCGATTCTGTTCTCCCTTCACCGCCAATTTCGAAGTTTTCAGCGTCGATCACCCCTTTCTCCGC
CGCTGTCATAGTTGTTCGATCTCCCTCCGTCAGTGAAGATGCGCATAATCTAGGCCAGAAACTCACGGATACCAAAATGATCTGAATGCTTGTTTGTTCTTCATGATCTC
TTATTAGAGATGGGATCGGCGAAGGATGAGCAATTTTCCATGTTTGAGGAGAAGGTAAAACGGACTGTGTATGTTGATAATCTCTCTCCTCAAGTAACTGAGCCTGTTTT
GAGAACTGCTTTAGATCAGTTTGGGACTGTGGTCAATGTCCATTTTATTCCAAATTACACGGAGCCAATTAATAGCTCTCAATGTGCTCTAGTGGAGATGAAGGATTCGA
AGGAGGCGAAATCTGTGATCGCCGTTATAGCTCAATTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCTCGCCCTGCCGAAGCAGAAATGTTTGATGATCGT
CCTGTAAAGCCTGGTAGGAAGATTAGCTTTAGATGGCTGGAAAGTGATGATCCTGATTTTGAAGTGGCCAGACAAATCAAGCGTCTTACGAAGAAACATGTGGCTGAAGC
TGCATTTTTGCTCAAGCAACATTTGGCGGAAGAGGAAAAGCTTGCAAAGCAGCAACAAGAAACGCTGAGAGGAAACTACAAGAAATATGAGATTGTAGATAGTGTAATGG
CCGATGGAACTGCCCGCAGGTTAGCAAAAAATTATAATATGCGAGTTTCAGATGATTAATGCCTTTGAAGCCTTGCTTTTGTAACCTCTTAATGCCACTGATTTTTACCT
GTAAATTTGTACAAATTGTCATTTATATGGCTGAATAGAGATGAATTAGAGACTTCTTTTGTGATTTAGATTTTAGAGGGAGAAAAACAAATATTTAGTATAATACTCCT
AACAACACTCTTGGCATTTGTTTTAAAAGAAAAACATTGTATTTTCCCCAT

Protein sequence

Show/hide protein sequence

MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAEAEMFDDRPVK
PGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD

IVF0009429 (gene) of Melon (IVF77) v1 genome