CuGenDBv2

Gene ID	IVF0009587
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	DNA-directed RNA polymerase subunit 10-like protein
Genome location	chr10:3157094..3158103
RNA-Seq Expression	IVF0009587
Synteny	IVF0009587
Gene Ontology terms	GO:0006360 - transcription by RNA polymerase I (biological process) GO:0006366 - transcription by RNA polymerase II (biological process) GO:0042797 - tRNA transcription by RNA polymerase III (biological process) GO:0005665 - RNA polymerase II, core complex (cellular component) GO:0005666 - RNA polymerase III complex (cellular component) GO:0005736 - RNA polymerase I complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR000268 - DNA-directed RNA polymerase, subunit N/Rpb10 IPR020789 - RNA polymerases, subunit N, zinc binding site IPR023580 - RNA polymerase subunit RPB10

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004135479.1 DNA-directed RNA polymerase subunit 10-like protein [Cucumis sativus]

1.50e-46

97.18

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
        MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALD LGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI+
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV

XP_008446194.1 PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Cucumis melo]

1.28e-47

100

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
        MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV

XP_022151052.1 DNA-directed RNA polymerase subunit 10-like protein [Momordica charantia]

1.75e-45

95.77

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
        MIIPVRCFTCGKVIGNKWD+YL+LLQADYPEGEALD LGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV

XP_027347186.1 DNA-directed RNA polymerase subunit 10-like protein [Abrus precatorius]

2.92e-44

94.2

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE
        MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEG+ALD LGLVRYCCRRMLMTHVDLIEKLLNYNT+DKS+
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE

XP_038893151.1 DNA-directed RNA polymerase subunit 10-like protein [Benincasa hispida]

6.10e-46

95.77

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
        MIIPVRCFTCGKVIGNKWDTYL+LLQADYPEGEALD LGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI+
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV

TrEMBL top hits

e value

%identity

Alignment

A0A067GUJ6 Uncharacterized protein

3.6e-32

94.2

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE
        MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEG+ALD LGLVRYCCRRMLMTHVDLIEKLLNYNT+DKS+
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE

A0A0A0KQ80 Uncharacterized protein

8.5e-34

97.18

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
        MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALD LGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI+
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV

A0A1S3BEG8 DNA-directed RNA polymerase subunit 10-like protein

1.3e-34

100

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
        MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV

A0A5A7SYN0 DNA-directed RNA polymerase subunit 10-like protein

1.3e-34

100

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
        MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV

A0A6J1DCG7 DNA-directed RNA polymerase subunit 10-like protein

5.5e-33

95.77

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
        MIIPVRCFTCGKVIGNKWD+YL+LLQADYPEGEALD LGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV

SwissProt top hits

e value

%identity

Alignment

Q32P78 DNA-directed RNA polymerases I, II, and III subunit RPABC5

9.7e-27

76.12

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDK
        MIIPVRCFTCGK++GNKW+ YL LLQA+Y EG+ALD LGL RYCCRRML+ HVDLIEKLLNY  ++K
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDK

Q39290 DNA-directed RNA polymerases I, II, and III subunit RPABC5

1.7e-31

86.96

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE
        MIIPVRCFTCGKVIGNKWD YLDLLQ DY EG+ALD L LVRYCCRRMLMTHVDLIEKLLNYNT++KS+
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE

Q6QN04 DNA-directed RNA polymerases I, II, and III subunit RPABC5

9.7e-27

76.12

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDK
        MIIPVRCFTCGK++GNKW+ YL LLQA+Y EG+ALD LGL RYCCRRML+ HVDLIEKLLNY  ++K
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDK

Q8LFJ6 DNA-directed RNA polymerases II, IV and V subunit 10

3.8e-31

86.96

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE
        MIIPVRCFTCGKVIGNKWD YLDLLQ DY EG+ALD L LVRYCCRRMLMTHVDLIEKLLNYNT++KS+
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE

Q9SYA6 DNA-directed RNA polymerase subunit 10-like protein

4.1e-33

89.86

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE
        MI+PVRCFTCGKVIGNKWDTYL+LLQADY EG+ALD LGLVRYCCRRMLMTHVDLIEKLLNYNTM+KS+
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE

Arabidopsis top hits

e value

%identity

Alignment

AT1G11475.1 RNA polymerases N / 8 kDa subunit

2.7e-32

86.96

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE
        MIIPVRCFTCGKVIGNKWD YLDLLQ DY EG+ALD L LVRYCCRRMLMTHVDLIEKLLNYNT++KS+
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE

AT1G61700.1 RNA polymerases N / 8 kDa subunit

2.9e-34

89.86

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE
        MI+PVRCFTCGKVIGNKWDTYL+LLQADY EG+ALD LGLVRYCCRRMLMTHVDLIEKLLNYNTM+KS+
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE

Sequences

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CDS sequence

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ATGATAATTCCGGTGCGGTGCTTCACTTGCGGCAAGGTGATCGGTAACAAATGGGACACTTATCTCGACCTTCTACAAGCTGACTATCCAGAAGGGGAGGCATTGGATAC
GTTAGGGTTAGTACGCTACTGTTGCAGGAGAATGCTTATGACTCATGTGGATCTCATTGAGAAGCTCTTGAACTACAACACCATGGATAAGTCTGAAATCGTCTAA

mRNA sequence

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AAAGAGGCGAAGTTTAATTTTAGTTAAAAATCAGGTAATGAAAAGGGAGGCGAAGTAGTCGGAATTAGTTTCCGAATTAGAAGCCATAGCTTTTTATGAATTTAGCTTTA
AATTAAAATACGATTGATGGATGAATGAAATTGGAGAACCAAACACAAATTCAAGAAGATGATAATTCCGGTGCGGTGCTTCACTTGCGGCAAGGTGATCGGTAACAAAT
GGGACACTTATCTCGACCTTCTACAAGCTGACTATCCAGAAGGGGAGGCATTGGATACGTTAGGGTTAGTACGCTACTGTTGCAGGAGAATGCTTATGACTCATGTGGAT
CTCATTGAGAAGCTCTTGAACTACAACACCATGGATAAGTCTGAAATCGTCTAAAGCCTAATTACGGGGAATTGCTTTGCCAACACAGTGAATTCTACAATGCATTGTTT
GGATTTTGTGAAGATTGGTTTTACCTTTTCTTTTTAGAGCTAATAAAGTCTGGTAGCAAAATTAATTTAGCTTTCACAAATGTTTCCAAAATTCATTTATAGTAGAAAGA
TGAAAATTGAGATACGAATAGCCTAAGATGAAAATTTAAAGTACCATATGTTGTTTTAGATCAC

Protein sequence

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MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV

IVF0009587 (gene) of Melon (IVF77) v1 genome