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IVF0009605 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0009605
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionArabinogalactan peptide 23
Genome locationchr04:28449836..28450384
RNA-Seq ExpressionIVF0009605
SyntenyIVF0009605
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044702 - Arabinogalactan protein 23/40


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CDP07756.1 unnamed protein product [Coffea canephora]2.82e-1568.33Show/hide
Query:  MDMKKVTCAVLVAAAAVSATMATSEGPAPAPSLSSDATAALPAVGAFIGASLVSFFAYYL
        M+MKK+ CAVLVAAA++SA +A S+ PAPAP+ ++ A AALPAVGA +GASLVSFFAYY+
Subjt:  MDMKKVTCAVLVAAAAVSATMATSEGPAPAPSLSSDATAALPAVGAFIGASLVSFFAYYL
KAA0043704.1 Arabinogalactan peptide 23 [Cucumis melo var. makuwa]6.95e-27100Show/hide
Query:  MDMKKVTCAVLVAAAAVSATMATSEGPAPAPSLSSDATAALPAVGAFIGASLVSFFAYYL
        MDMKKVTCAVLVAAAAVSATMATSEGPAPAPSLSSDATAALPAVGAFIGASLVSFFAYYL
Subjt:  MDMKKVTCAVLVAAAAVSATMATSEGPAPAPSLSSDATAALPAVGAFIGASLVSFFAYYL
XP_027109799.1 arabinogalactan protein 23-like [Coffea arabica]5.69e-1568.33Show/hide
Query:  MDMKKVTCAVLVAAAAVSATMATSEGPAPAPSLSSDATAALPAVGAFIGASLVSFFAYYL
        M+MKK+ CAVLVAAA+VSA +A S+ PAPAP  ++ A AALPAVG  +GASLVSFFAYY+
Subjt:  MDMKKVTCAVLVAAAAVSATMATSEGPAPAPSLSSDATAALPAVGAFIGASLVSFFAYYL
XP_027109800.1 arabinogalactan protein 23-like [Coffea arabica]8.09e-1569.49Show/hide
Query:  MDMKKVTCAVLVAAAAVSATMATSEGPAPAPSLSSDATAALPAVGAFIGASLVSFFAYY
        M+MKK+ CAVLVAAA+VSA +A S+ PAPAP  ++ A AALPAVG  +GASLVSFFAYY
Subjt:  MDMKKVTCAVLVAAAAVSATMATSEGPAPAPSLSSDATAALPAVGAFIGASLVSFFAYY
XP_038906349.1 arabinogalactan protein 23 [Benincasa hispida]2.61e-2085.25Show/hide
Query:  MDMKKVTCAVLVAAAAVSATMATSEGPAPAPSLSSDATAA-LPAVGAFIGASLVSFFAYYL
        MDMKKVTCAVLV+AA +SATMA+ EGPAPAP LSSDA AA LPAVGAFIGASL SFFAYYL
Subjt:  MDMKKVTCAVLVAAAAVSATMATSEGPAPAPSLSSDATAA-LPAVGAFIGASLVSFFAYYL
TrEMBL top hitse value%identityAlignment
A0A059DIY4 Uncharacterized protein (Fragment)7.2e-1066.67Show/hide
Query:  MDMKKVTCAVLVAAAAVSATMATSEGPAPAPSLSSDATAALPAVGAFIGASLVSFFAYYL
        MDMKK++CAVLVAAA++SA +A+ + PAPAP  SS A+AALP  G+ +GAS+VSFFAYYL
Subjt:  MDMKKVTCAVLVAAAAVSATMATSEGPAPAPSLSSDATAALPAVGAFIGASLVSFFAYYL
A0A068UH44 Uncharacterized protein2.5e-1068.33Show/hide
Query:  MDMKKVTCAVLVAAAAVSATMATSEGPAPAPSLSSDATAALPAVGAFIGASLVSFFAYYL
        M+MKK+ CAVLVAAA++SA +A S+ PAPAP+ ++ A AALPAVGA +GASLVSFFAYY+
Subjt:  MDMKKVTCAVLVAAAAVSATMATSEGPAPAPSLSSDATAALPAVGAFIGASLVSFFAYYL
A0A5D3DQ83 Arabinogalactan peptide 233.8e-19100Show/hide
Query:  MDMKKVTCAVLVAAAAVSATMATSEGPAPAPSLSSDATAALPAVGAFIGASLVSFFAYYL
        MDMKKVTCAVLVAAAAVSATMATSEGPAPAPSLSSDATAALPAVGAFIGASLVSFFAYYL
Subjt:  MDMKKVTCAVLVAAAAVSATMATSEGPAPAPSLSSDATAALPAVGAFIGASLVSFFAYYL
A0A6P6W2Y2 arabinogalactan protein 23-like4.2e-1068.33Show/hide
Query:  MDMKKVTCAVLVAAAAVSATMATSEGPAPAPSLSSDATAALPAVGAFIGASLVSFFAYYL
        M+MKK+ CAVLVAAA+VSA +A S+ PAPAP  ++ A AALPAVG  +GASLVSFFAYY+
Subjt:  MDMKKVTCAVLVAAAAVSATMATSEGPAPAPSLSSDATAALPAVGAFIGASLVSFFAYYL
A0A6P6W4D1 arabinogalactan protein 23-like5.5e-1069.49Show/hide
Query:  MDMKKVTCAVLVAAAAVSATMATSEGPAPAPSLSSDATAALPAVGAFIGASLVSFFAYY
        M+MKK+ CAVLVAAA+VSA +A S+ PAPAP  ++ A AALPAVG  +GASLVSFFAYY
Subjt:  MDMKKVTCAVLVAAAAVSATMATSEGPAPAPSLSSDATAALPAVGAFIGASLVSFFAYY
SwissProt top hitse value%identityAlignment
Q8S2W4 Arabinogalactan protein 233.5e-0960Show/hide
Query:  MDMKKVTCAVLVAAAAVSATMATSEGPAPAPSLSSDATAALPAVGAFIGASLVSFFAYYL
        M+MKK+ C VL AAA+++A MA  E  APAP  +S A+AALPA+G+ +GASLVS F+YYL
Subjt:  MDMKKVTCAVLVAAAAVSATMATSEGPAPAPSLSSDATAALPAVGAFIGASLVSFFAYYL
Arabidopsis top hitse value%identityAlignment
AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)3.9e-0855.74Show/hide
Query:  MDMKKVTCAVLVAAAAVSATMATSEG-PAPAPSLSSDATAALPAVGAFIGASLVSFFAYYL
        M+MKK+ C V+ AAA+++A MA   G PAP P+ +S A+ A+PA+G+ +GASLVS FAYYL
Subjt:  MDMKKVTCAVLVAAAAVSATMATSEG-PAPAPSLSSDATAALPAVGAFIGASLVSFFAYYL
AT3G57690.1 arabinogalactan protein 232.5e-1060Show/hide
Query:  MDMKKVTCAVLVAAAAVSATMATSEGPAPAPSLSSDATAALPAVGAFIGASLVSFFAYYL
        M+MKK+ C VL AAA+++A MA  E  APAP  +S A+AALPA+G+ +GASLVS F+YYL
Subjt:  MDMKKVTCAVLVAAAAVSATMATSEGPAPAPSLSSDATAALPAVGAFIGASLVSFFAYYL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACATGAAGAAGGTGACCTGTGCCGTCCTTGTTGCGGCTGCCGCCGTGAGTGCTACCATGGCCACCAGTGAAGGGCCAGCTCCGGCACCCAGCCTGTCCTCCGATGC
AACTGCTGCTTTGCCAGCTGTTGGAGCCTTCATTGGTGCTTCTCTCGTGTCTTTCTTTGCCTACTACTTGTAA
mRNA sequenceShow/hide mRNA sequence
GCTCAGTGAAGCTCAATTATTATTGCATTAAGAAAGATCGTTGCTTTTCCTAAGCGGGTCTCTTCTTTCTCATTTTTGTTTACCACCATGGACATGAAGAAGGTGACCTG
TGCCGTCCTTGTTGCGGCTGCCGCCGTGAGTGCTACCATGGCCACCAGTGAAGGGCCAGCTCCGGCACCCAGCCTGTCCTCCGATGCAACTGCTGCTTTGCCAGCTGTTG
GAGCCTTCATTGGTGCTTCTCTCGTGTCTTTCTTTGCCTACTACTTGTAAGAAGTTGAGAAAAGAATAGGAGGGGTTGGGAGGAATACAGAGAAAAATGTTATGTAAACA
TGGGAAAGGGAAAGAGAAACTTGTTAAGCAGTGGTAGTGGTAATTGGTGTAGTTAATTTGGAAGAAGAAAATGAATGTTTATTTGAATTTGATTTCAATTTCATTGCTCA
ATGGGCAAAAACTTTTGAATTTGGTTTGATTATTTAATGAGCAAAATCTTGGTTGAATTATAGAAGTATATGTTTACTCTTTTGCTATTTTAATTGATTTGTTTGGAGA
Protein sequenceShow/hide protein sequence
MDMKKVTCAVLVAAAAVSATMATSEGPAPAPSLSSDATAALPAVGAFIGASLVSFFAYYL