CuGenDBv2

Gene ID	IVF0009617
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Histone H2B
Genome location	chr12:8440414..8450089
RNA-Seq Expression	IVF0009617
Synteny	IVF0009617
Gene Ontology terms	GO:0006334 - nucleosome assembly (biological process) GO:0000786 - nucleosome (cellular component) GO:0005634 - nucleus (cellular component) GO:0003677 - DNA binding (molecular function) GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domains	IPR000558 - Histone H2B IPR007125 - Histone H2A/H2B/H3 IPR009072 - Histone-fold

Homology

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GenBank top hits

e value

%identity

Alignment

6M2M_B A role for histone chaperone OsChz1 in histone recognition and deposition [Arabidopsis thaliana]

1.97e-22

100

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Query:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG
        MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG
Subjt:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG

GEW92838.1 histone H2B [Tanacetum cinerariifolium]

1.66e-22

100

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Query:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG
        MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG
Subjt:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG

MCI71321.1 histone H2B [Trifolium medium]

2.12e-22

97.83

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Query:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG
        MGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLPG
Subjt:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG

VVA96988.1 unnamed protein product [Arabis nemorensis]

8.21e-23

100

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Query:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG
        MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG
Subjt:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG

XP_008464354.1 PREDICTED: histone H2B.1, partial [Cucumis melo]

1.04e-22

100

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Query:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG
        MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG
Subjt:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG

TrEMBL top hits

e value

%identity

Alignment

A0A397Y067 Histone H2B

1.6e-15

100

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Query:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG
        MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG
Subjt:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG

A0A397ZIS9 Histone H2B

1.6e-15

100

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Query:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG
        MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG
Subjt:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG

A0A6J5XGW8 Histone H2B

1.6e-15

100

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Query:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG
        MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG
Subjt:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG

M5W0M7 Histone H2B

1.6e-15

100

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Query:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG
        MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG
Subjt:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG

M5WDD7 Histone H2B

1.6e-15

100

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Query:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG
        MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG
Subjt:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG

SwissProt top hits

e value

%identity

Alignment

P40283 Histone H2B.11

9.4e-18

97.83

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Query:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG
        MGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREIQTAVRLVLPG
Subjt:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG

Q1S9I9 Probable histone H2B.1

9.4e-18

97.83

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Query:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG
        MGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLPG
Subjt:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG

Q9LQQ4 Histone H2B.1

4.2e-18

100

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Query:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG
        MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG
Subjt:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG

Q9SI96 Histone H2B.3

9.4e-18

97.83

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Query:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG
        MGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREIQTAVRLVLPG
Subjt:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG

Q9ZUS0 Histone H2B.4

4.2e-18

100

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Query:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG
        MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG
Subjt:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG

Arabidopsis top hits

e value

%identity

Alignment

AT1G07790.1 Histone superfamily protein

3.0e-19

100

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Query:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG
        MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG
Subjt:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG

AT2G28720.1 Histone superfamily protein

6.7e-19

97.83

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Query:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG
        MGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREIQTAVRLVLPG
Subjt:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG

AT2G37470.1 Histone superfamily protein

3.0e-19

100

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Query:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG
        MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG
Subjt:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG

AT3G53650.1 Histone superfamily protein

6.7e-19

97.83

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Query:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG
        MGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLPG
Subjt:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG

AT5G02570.1 Histone superfamily protein

6.7e-19

97.83

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Query:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG
        MGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLPG
Subjt:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG

Sequences

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CDS sequence

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ATGGGGATTATGAACAGCTTCATCAACGACATTTTCGAGAAGCTCGCTCAGGAATCCTCAAAGCTTGCTCGCTACAACAAGAAGCCGACTATCACCTCTCGGGAGATCCA
AACGGCGGTGCGCCTTGTTCTTCCTGGTTACAGGGAGGCGGGACTGGGCAAATTCATTACCTTTCAAGTTGGATTCTAA

mRNA sequence

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ATGGGGATTATGAACAGCTTCATCAACGACATTTTCGAGAAGCTCGCTCAGGAATCCTCAAAGCTTGCTCGCTACAACAAGAAGCCGACTATCACCTCTCGGGAGATCCA
AACGGCGGTGCGCCTTGTTCTTCCTGGTTACAGGGAGGCGGGACTGGGCAAATTCATTACCTTTCAAGTTGGATTCTAATGGTCCCTGAGGATTATCTGGAGCAAATAAG
GGTAACCCAAGGATTAGTGCCAAGTTTATTGCTCCTTGTTACTATATCAACAAGGTCAGGAGAAGATAAATATCAATGGAAGGTTTGGACAGATATAAATAAAAATAAAC
TAAAATAACGTTTACACCAACACAAGCGGAAACTTTTGGTTGTAGCATTTTGAAATTGGCTGAGGCGCCACGGAAAAGGCCAACCTGAATGGTTCAGGACTAGCAGCCAA
CAGCCTCTGCCATCAACAGTTCTATCTAAACGTCAGATGGACAGATTTGAGCAACACACACTTAATTGTCCATCTTGTAAAGGAGCTTAGGAAACATTTCAAACAGTGCA
AAGGCTCCTAATTGGGGCAACTGTAGTTTTCGCGGCCACCACAGGTATCCCTTGTGCTGTACAGATACACATATTCTTCTTGCCAGTCTTGCACTCGCAAGCGTCGGCTT
GGCTTAGGCTCGGTTTGAACTTCAAAAGAATTTTGTGTTCATTGACTATGTTCATGCAGAGATTGATTAGAAGATACCATTAGAGATTGAGAGAGAAATATTGTTGTTTA
GAGGAGGATTTTAATCAAGTAATGTATAGTTTTACAAAGATATCGTAGTTGAACTGTGCGAAATGAAACTAGAGACGAATATGTCTTCGTTTTGTTTGGTTGTATTCTTG
TTACAGCCATTAATTTTGATATTGTTCCAATTCAGTTTTATTTTAGGACTAATGACGTTAGTTGTTGATGTAACAAAACTTTGATTTTGAGTACATGACTCCAC

Protein sequence

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MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGYREAGLGKFITFQVGF

IVF0009617 (gene) of Melon (IVF77) v1 genome