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IVF0009696 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0009696
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr04:8153467..8154122
RNA-Seq ExpressionIVF0009696
SyntenyIVF0009696
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036773.1 uncharacterized protein E6C27_scaffold20G00570 [Cucumis melo var. makuwa]2.03e-13494.95Show/hide
Query:  MLMKLQYLNLNMHGVQMRSYRFKSTPPRRPYRLSSEKSQVNVSASSHLPVNDEVIVESTTKGAETAPSVSETHTTDMDNRFVLAKS-----------SSS
        MLMKLQYLNLNMHGVQMRSYRFKSTPPRRPYRLSSEKSQVNVSASSHLPVNDEVIVESTTKGAETAPSVSETHTTDMDNRFVLAKS           SSS
Subjt:  MLMKLQYLNLNMHGVQMRSYRFKSTPPRRPYRLSSEKSQVNVSASSHLPVNDEVIVESTTKGAETAPSVSETHTTDMDNRFVLAKS-----------SSS

Query:  FEDVFAPTPGHPPTTNVEAGPSRRSPPIQSSIQVDASVTNQSSVSKHNPIDKSTENVGRNDVHVVESPAAAESPAANEHVDPTDTCATNTVELDVNDELQ
        FEDVFAPTPGHPPTTNVEAGPSRRSPPIQSSIQVDASVTNQSSVSKHNPIDKSTENVGRNDVHVVESPAAAESPAANEHVDPTDTCATNTVELDVNDELQ
Subjt:  FEDVFAPTPGHPPTTNVEAGPSRRSPPIQSSIQVDASVTNQSSVSKHNPIDKSTENVGRNDVHVVESPAAAESPAANEHVDPTDTCATNTVELDVNDELQ

Query:  LETQQSPGVSRPKGKKVQ
        LETQQSPGVSRPKGKKVQ
Subjt:  LETQQSPGVSRPKGKKVQ

KAA0048750.1 uncharacterized protein E6C27_scaffold43G00540 [Cucumis melo var. makuwa]1.15e-7563.56Show/hide
Query:  NMHGVQMRSYRFKSTPPRRPYRLSSEKSQVNVSASSHLPVNDEVIVESTTKGAETAPSVSETHTTDMDN------------------RFVLAKS------
        NM+GV MR + FKST PRRPYRL SEKSQVNVS  S LPVNDEVI+E T K  ETAPSV +THTT MD+                    V AKS      
Subjt:  NMHGVQMRSYRFKSTPPRRPYRLSSEKSQVNVSASSHLPVNDEVIVESTTKGAETAPSVSETHTTDMDN------------------RFVLAKS------

Query:  -----SSSFEDVFAPTPGHPPTTNVEAGPSRRSPPIQSSIQVDASVTNQSSVSKHNPIDKSTENVGRNDVHVVESPAAAESPAANEHVDPTDTCATNTVE
             S S +DVF PTPGH PTTN EA P  RSP +QSSIQVD SVTNQ  V +HNP+D+ST+ VGRNDV VV+SP AA S A +EHV PTDTCATNTVE
Subjt:  -----SSSFEDVFAPTPGHPPTTNVEAGPSRRSPPIQSSIQVDASVTNQSSVSKHNPIDKSTENVGRNDVHVVESPAAAESPAANEHVDPTDTCATNTVE

Query:  LDVNDELQLETQQSPGVSRPKGKKV
        LDVNDELQ ETQQS GVSRP GKKV
Subjt:  LDVNDELQLETQQSPGVSRPKGKKV

KAA0054676.1 uncharacterized protein E6C27_scaffold24G004970 [Cucumis melo var. makuwa]2.72e-3752.02Show/hide
Query:  NMHGVQMRSYRFKSTPPRRPYRLSSEKSQVNVSASSHLPVNDEVIVESTTKGAETAPSVSETHTTDMDNRFVLAKSSSSFEDVFAPTPGHPPTTNVEAGP
        NMH V+MR   FKST  +R Y   SEK Q+N   SSHL V+DEVIVES  +  ETAP              + +  SSS +D+F PT GHP  TN  AG 
Subjt:  NMHGVQMRSYRFKSTPPRRPYRLSSEKSQVNVSASSHLPVNDEVIVESTTKGAETAPSVSETHTTDMDNRFVLAKSSSSFEDVFAPTPGHPPTTNVEAGP

Query:  SRRSPPIQSSIQVDASVTNQSSVSKHNPIDKSTENVGRNDVHVVESPAAAESPAANEHVDPTDTCATNTVELD
        SRRSPPI+SSIQVDASV +Q  V K +PID+STEN+G+ D    ++PA A++     HV+PT+TCAT+TVE D
Subjt:  SRRSPPIQSSIQVDASVTNQSSVSKHNPIDKSTENVGRNDVHVVESPAAAESPAANEHVDPTDTCATNTVELD

KAA0065524.1 gag/pol protein [Cucumis melo var. makuwa]4.63e-5355.66Show/hide
Query:  QMRSYRFKSTPPRRPYRLSSEKSQVNVSASSHLPVNDEVIVESTTKGAETAPSVSETHTTDMD------------------NRFVLAKS-----------
        ++R   FKSTPPRRPYRL S+K QVNVS SS+L V+ E I E   +  ETAPSVSETHTT MD                  +  V AKS           
Subjt:  QMRSYRFKSTPPRRPYRLSSEKSQVNVSASSHLPVNDEVIVESTTKGAETAPSVSETHTTDMD------------------NRFVLAKS-----------

Query:  SSSFEDVFAPTPGHPPTTNVEAGPSRRSPPIQSSIQVDASVTNQSSVSKHNPIDKSTENVGRNDVHVVESPAAAESPAANEHVDPTDTCATNTVELDVND
        SSS++D+F PTP H PTTN  AG S  SP ++SSIQVDASVT+   V   NPIDK+TENVGRNDV V       ES   + HV+ T+TCAT+T+E DVND
Subjt:  SSSFEDVFAPTPGHPPTTNVEAGPSRRSPPIQSSIQVDASVTNQSSVSKHNPIDKSTENVGRNDVHVVESPAAAESPAANEHVDPTDTCATNTVELDVND

Query:  ELQLETQQSPGVSRPKGKKVQ
        ELQ ETQQSPGVSRPKGKK Q
Subjt:  ELQLETQQSPGVSRPKGKKVQ

TYK29294.1 gag/pol protein [Cucumis melo var. makuwa]4.09e-5356.28Show/hide
Query:  FKSTPPRRPYRLSSEKSQVNVSASSHLPVNDEVIVESTTKGAETAPSVSETHTTDMD------------------NRFVLAKS-----------SSSFED
        FKSTPPRRPYRL S+K QVNVS SS+L V+ E I E   +  ETAPSVSETHTT MD                  +  V AKS           SSS++D
Subjt:  FKSTPPRRPYRLSSEKSQVNVSASSHLPVNDEVIVESTTKGAETAPSVSETHTTDMD------------------NRFVLAKS-----------SSSFED

Query:  VFAPTPGHPPTTNVEAGPSRRSPPIQSSIQVDASVTNQSSVSKHNPIDKSTENVGRNDVHVVESPAAAESPAANEHVDPTDTCATNTVELDVNDELQLET
        +F PTP H PTTN  AG S  SP ++SSIQVDAS+T+   V   NPIDK+TENVGRNDV V       ES   + HV+ T+TCAT+T+E DVNDELQ ET
Subjt:  VFAPTPGHPPTTNVEAGPSRRSPPIQSSIQVDASVTNQSSVSKHNPIDKSTENVGRNDVHVVESPAAAESPAANEHVDPTDTCATNTVELDVNDELQLET

Query:  QQSPGVSRPKGKKVQ
        QQSPGVSRPKGKK Q
Subjt:  QQSPGVSRPKGKKVQ

TrEMBL top hitse value%identityAlignment
A0A5A7T1I3 Uncharacterized protein1.3e-10394.95Show/hide
Query:  MLMKLQYLNLNMHGVQMRSYRFKSTPPRRPYRLSSEKSQVNVSASSHLPVNDEVIVESTTKGAETAPSVSETHTTDMDNRFVLAKS-----------SSS
        MLMKLQYLNLNMHGVQMRSYRFKSTPPRRPYRLSSEKSQVNVSASSHLPVNDEVIVESTTKGAETAPSVSETHTTDMDNRFVLAKS           SSS
Subjt:  MLMKLQYLNLNMHGVQMRSYRFKSTPPRRPYRLSSEKSQVNVSASSHLPVNDEVIVESTTKGAETAPSVSETHTTDMDNRFVLAKS-----------SSS

Query:  FEDVFAPTPGHPPTTNVEAGPSRRSPPIQSSIQVDASVTNQSSVSKHNPIDKSTENVGRNDVHVVESPAAAESPAANEHVDPTDTCATNTVELDVNDELQ
        FEDVFAPTPGHPPTTNVEAGPSRRSPPIQSSIQVDASVTNQSSVSKHNPIDKSTENVGRNDVHVVESPAAAESPAANEHVDPTDTCATNTVELDVNDELQ
Subjt:  FEDVFAPTPGHPPTTNVEAGPSRRSPPIQSSIQVDASVTNQSSVSKHNPIDKSTENVGRNDVHVVESPAAAESPAANEHVDPTDTCATNTVELDVNDELQ

Query:  LETQQSPGVSRPKGKKVQ
        LETQQSPGVSRPKGKKVQ
Subjt:  LETQQSPGVSRPKGKKVQ

A0A5A7VE22 Gag/pol protein2.2e-4555.66Show/hide
Query:  QMRSYRFKSTPPRRPYRLSSEKSQVNVSASSHLPVNDEVIVESTTKGAETAPSVSETHTTDMD------------------NRFVLAKS-----------
        ++R   FKSTPPRRPYRL S+K QVNVS SS+L V+ E I E   +  ETAPSVSETHTT MD                  +  V AKS           
Subjt:  QMRSYRFKSTPPRRPYRLSSEKSQVNVSASSHLPVNDEVIVESTTKGAETAPSVSETHTTDMD------------------NRFVLAKS-----------

Query:  SSSFEDVFAPTPGHPPTTNVEAGPSRRSPPIQSSIQVDASVTNQSSVSKHNPIDKSTENVGRNDVHVVESPAAAESPAANEHVDPTDTCATNTVELDVND
        SSS++D+F PTP H PTTN  AG S  SP ++SSIQVDASVT+   V   NPIDK+TENVGRNDV V       ES   + HV+ T+TCAT+T+E DVND
Subjt:  SSSFEDVFAPTPGHPPTTNVEAGPSRRSPPIQSSIQVDASVTNQSSVSKHNPIDKSTENVGRNDVHVVESPAAAESPAANEHVDPTDTCATNTVELDVND

Query:  ELQLETQQSPGVSRPKGKKVQ
        ELQ ETQQSPGVSRPKGKK Q
Subjt:  ELQLETQQSPGVSRPKGKKVQ

A0A5D3CAN5 Uncharacterized protein3.0e-3152.02Show/hide
Query:  NMHGVQMRSYRFKSTPPRRPYRLSSEKSQVNVSASSHLPVNDEVIVESTTKGAETAPSVSETHTTDMDNRFVLAKSSSSFEDVFAPTPGHPPTTNVEAGP
        NMH V+MR   FKST  +R Y   SEK Q+N   SSHL V+DEVIVES  +  ETAP              + +  SSS +D+F PT GHP  TN  AG 
Subjt:  NMHGVQMRSYRFKSTPPRRPYRLSSEKSQVNVSASSHLPVNDEVIVESTTKGAETAPSVSETHTTDMDNRFVLAKSSSSFEDVFAPTPGHPPTTNVEAGP

Query:  SRRSPPIQSSIQVDASVTNQSSVSKHNPIDKSTENVGRNDVHVVESPAAAESPAANEHVDPTDTCATNTVELD
        SRRSPPI+SSIQVDASV +Q  V K +PID+STEN+G+ D    ++PA A++     HV+PT+TCAT+TVE D
Subjt:  SRRSPPIQSSIQVDASVTNQSSVSKHNPIDKSTENVGRNDVHVVESPAAAESPAANEHVDPTDTCATNTVELD

A0A5D3E0G7 Gag/pol protein3.7e-4556.28Show/hide
Query:  FKSTPPRRPYRLSSEKSQVNVSASSHLPVNDEVIVESTTKGAETAPSVSETHTTDMD------------------NRFVLAKS-----------SSSFED
        FKSTPPRRPYRL S+K QVNVS SS+L V+ E I E   +  ETAPSVSETHTT MD                  +  V AKS           SSS++D
Subjt:  FKSTPPRRPYRLSSEKSQVNVSASSHLPVNDEVIVESTTKGAETAPSVSETHTTDMD------------------NRFVLAKS-----------SSSFED

Query:  VFAPTPGHPPTTNVEAGPSRRSPPIQSSIQVDASVTNQSSVSKHNPIDKSTENVGRNDVHVVESPAAAESPAANEHVDPTDTCATNTVELDVNDELQLET
        +F PTP H PTTN  AG S  SP ++SSIQVDAS+T+   V   NPIDK+TENVGRNDV V       ES   + HV+ T+TCAT+T+E DVNDELQ ET
Subjt:  VFAPTPGHPPTTNVEAGPSRRSPPIQSSIQVDASVTNQSSVSKHNPIDKSTENVGRNDVHVVESPAAAESPAANEHVDPTDTCATNTVELDVNDELQLET

Query:  QQSPGVSRPKGKKVQ
        QQSPGVSRPKGKK Q
Subjt:  QQSPGVSRPKGKKVQ

A0A5D3E8I4 Uncharacterized protein2.6e-5963.56Show/hide
Query:  NMHGVQMRSYRFKSTPPRRPYRLSSEKSQVNVSASSHLPVNDEVIVESTTKGAETAPSVSETHTTDMD------------------NRFVLAKS------
        NM+GV MR + FKST PRRPYRL SEKSQVNVS  S LPVNDEVI+E T K  ETAPSV +THTT MD                  +  V AKS      
Subjt:  NMHGVQMRSYRFKSTPPRRPYRLSSEKSQVNVSASSHLPVNDEVIVESTTKGAETAPSVSETHTTDMD------------------NRFVLAKS------

Query:  -----SSSFEDVFAPTPGHPPTTNVEAGPSRRSPPIQSSIQVDASVTNQSSVSKHNPIDKSTENVGRNDVHVVESPAAAESPAANEHVDPTDTCATNTVE
             S S +DVF PTPGH PTTN EA P  RSP +QSSIQVD SVTNQ  V +HNP+D+ST+ VGRNDV VV+SP AA S A +EHV PTDTCATNTVE
Subjt:  -----SSSFEDVFAPTPGHPPTTNVEAGPSRRSPPIQSSIQVDASVTNQSSVSKHNPIDKSTENVGRNDVHVVESPAAAESPAANEHVDPTDTCATNTVE

Query:  LDVNDELQLETQQSPGVSRPKGKKV
        LDVNDELQ ETQQS GVSRP GKKV
Subjt:  LDVNDELQLETQQSPGVSRPKGKKV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAATGAAGCTCCAGTATCTCAATCTTAATATGCATGGTGTACAGATGAGGAGTTATCGGTTCAAAAGCACTCCTCCACGGAGACCGTATCGACTTTCATCAGAGAA
ATCTCAGGTAAATGTCTCTGCAAGTTCCCATTTACCTGTGAATGATGAGGTTATTGTTGAAAGTACTACAAAGGGTGCTGAAACTGCACCAAGTGTCTCTGAGACTCACA
CTACCGATATGGACAACCGATTTGTCCTGGCTAAATCTAGCTCCTCTTTTGAAGATGTGTTTGCTCCAACACCGGGTCATCCGCCTACGACAAATGTTGAAGCTGGTCCA
TCACGTCGTTCACCACCGATTCAGTCATCAATTCAAGTTGATGCTTCTGTTACAAATCAGAGTTCAGTGTCTAAACATAATCCTATTGATAAATCTACTGAGAATGTGGG
AAGGAATGATGTTCATGTTGTTGAGTCTCCGGCTGCTGCTGAGTCTCCTGCTGCTAATGAACATGTCGACCCGACTGATACTTGTGCAACCAATACTGTTGAACTAGATG
TTAATGATGAACTCCAACTAGAGACTCAACAATCACCTGGTGTATCTAGGCCAAAGGGAAAGAAGGTTCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTTAATGAAGCTCCAGTATCTCAATCTTAATATGCATGGTGTACAGATGAGGAGTTATCGGTTCAAAAGCACTCCTCCACGGAGACCGTATCGACTTTCATCAGAGAA
ATCTCAGGTAAATGTCTCTGCAAGTTCCCATTTACCTGTGAATGATGAGGTTATTGTTGAAAGTACTACAAAGGGTGCTGAAACTGCACCAAGTGTCTCTGAGACTCACA
CTACCGATATGGACAACCGATTTGTCCTGGCTAAATCTAGCTCCTCTTTTGAAGATGTGTTTGCTCCAACACCGGGTCATCCGCCTACGACAAATGTTGAAGCTGGTCCA
TCACGTCGTTCACCACCGATTCAGTCATCAATTCAAGTTGATGCTTCTGTTACAAATCAGAGTTCAGTGTCTAAACATAATCCTATTGATAAATCTACTGAGAATGTGGG
AAGGAATGATGTTCATGTTGTTGAGTCTCCGGCTGCTGCTGAGTCTCCTGCTGCTAATGAACATGTCGACCCGACTGATACTTGTGCAACCAATACTGTTGAACTAGATG
TTAATGATGAACTCCAACTAGAGACTCAACAATCACCTGGTGTATCTAGGCCAAAGGGAAAGAAGGTTCAATAA
Protein sequenceShow/hide protein sequence
MLMKLQYLNLNMHGVQMRSYRFKSTPPRRPYRLSSEKSQVNVSASSHLPVNDEVIVESTTKGAETAPSVSETHTTDMDNRFVLAKSSSSFEDVFAPTPGHPPTTNVEAGP
SRRSPPIQSSIQVDASVTNQSSVSKHNPIDKSTENVGRNDVHVVESPAAAESPAANEHVDPTDTCATNTVELDVNDELQLETQQSPGVSRPKGKKVQ