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IVF0009730 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0009730
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass, expressed
Genome locationchr12:4441312..4442806
RNA-Seq ExpressionIVF0009730
SyntenyIVF0009730
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051945.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]2.70e-1370.37Show/hide
Query:  KSGSSTVSLFCIGHKCFELRVSYFEDFSLHFWHHPSYIFPKYSSRSELVGGRTK
        KSG STV LF IGHKCFEL  SYFE+F+LH WH PS+I+ KY S SEL GGR K
Subjt:  KSGSSTVSLFCIGHKCFELRVSYFEDFSLHFWHHPSYIFPKYSSRSELVGGRTK

KAA0057641.1 hypothetical protein E6C27_scaffold43054G00020 [Cucumis melo var. makuwa]2.07e-1542.19Show/hide
Query:  EIVFQQKKQAKLKKFWCSSQENANENALELVFLSRGKTRFFNGFFILIKSGSSTVSLFCIGHKCFELRVSYFEDFSLHFWHHPSYIFPKYSSRSELVGGR
        E+  Q++KQ +LK FWCSSQENA++NA +  F S GK R   GFF L++          IGHK F+L+ SY+EDF+ H WH               + G 
Subjt:  EIVFQQKKQAKLKKFWCSSQENANENALELVFLSRGKTRFFNGFFILIKSGSSTVSLFCIGHKCFELRVSYFEDFSLHFWHHPSYIFPKYSSRSELVGGR

Query:  TKVQPKTIKKMANALPTSGERSSSFRNH
             K  K+    LPTSGE SS  RNH
Subjt:  TKVQPKTIKKMANALPTSGERSSSFRNH

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]4.30e-1346.36Show/hide
Query:  FQRVVNACPVLETTKNSKVNILTFHNFEIVFQQKKQAKLKKFWCSSQENANENALELVFLSRGKTRFFNGFFILIKSGSSTVSLFCIGHKCFELRVSYFE
        FQRV NA PV ETT N+                KK+A+LK FWCSSQENA EN L+ VF S GK +  +GFF L +          IGHK  + R SY E
Subjt:  FQRVVNACPVLETTKNSKVNILTFHNFEIVFQQKKQAKLKKFWCSSQENANENALELVFLSRGKTRFFNGFFILIKSGSSTVSLFCIGHKCFELRVSYFE

Query:  DFSLHFWHHP
        DF+ + WH P
Subjt:  DFSLHFWHHP

KAA0065520.1 retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo var. makuwa]5.46e-3353.59Show/hide
Query:  MLFQRVVNACPVLETTKNSKVNILTFHNFEIVFQQKKQAKLKKFWCSSQENANENALELVFLSRGKTRFFNGFFILIKSGSSTVSLFCIGHKCFELRVSY
        +LFQRV NA PV    K++             FQQ K AKLK FWCSSQE+A+ENA + VFLS  K R  +GF +L           C+GHK FEL+ SY
Subjt:  MLFQRVVNACPVLETTKNSKVNILTFHNFEIVFQQKKQAKLKKFWCSSQENANENALELVFLSRGKTRFFNGFFILIKSGSSTVSLFCIGHKCFELRVSY

Query:  FEDFSLHFWHHPSYIFPKYSSRSELVGGRTKVQPKTIKKMANALPTSGERSSS
         EDFSLH W  PS +F KY + S+LV GRTKVQ  TI+KMAN LPTSG+R SS
Subjt:  FEDFSLHFWHHPSYIFPKYSSRSELVGGRTKVQPKTIKKMANALPTSGERSSS

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]8.23e-1476.92Show/hide
Query:  EDFSLHFWHHPSYIFPKYSSRSELVGGRTKVQPKTIKKMANALPTSGERSSS
        +DFSLH WHH S IFP+Y S SELVG RTKVQ  TI+K+ANALPTSGERSSS
Subjt:  EDFSLHFWHHPSYIFPKYSSRSELVGGRTKVQPKTIKKMANALPTSGERSSS

TrEMBL top hitse value%identityAlignment
A0A5A7UVV0 Uncharacterized protein3.7e-1342.19Show/hide
Query:  EIVFQQKKQAKLKKFWCSSQENANENALELVFLSRGKTRFFNGFFILIKSGSSTVSLFCIGHKCFELRVSYFEDFSLHFWHHPSYIFPKYSSRSELVGGR
        E+  Q++KQ +LK FWCSSQENA++NA +  F S GK R   GFF L++          IGHK F+L+ SY+EDF+ H WH               + G 
Subjt:  EIVFQQKKQAKLKKFWCSSQENANENALELVFLSRGKTRFFNGFFILIKSGSSTVSLFCIGHKCFELRVSYFEDFSLHFWHHPSYIFPKYSSRSELVGGR

Query:  TKVQPKTIKKMANALPTSGERSSSFRNH
             K  K+    LPTSGE SS  RNH
Subjt:  TKVQPKTIKKMANALPTSGERSSSFRNH

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein4.5e-1146.36Show/hide
Query:  FQRVVNACPVLETTKNSKVNILTFHNFEIVFQQKKQAKLKKFWCSSQENANENALELVFLSRGKTRFFNGFFILIKSGSSTVSLFCIGHKCFELRVSYFE
        FQRV NA PV ETT N+                KK+A+LK FWCSSQENA EN L+ VF S GK +  +GFF L +          IGHK  + R SY E
Subjt:  FQRVVNACPVLETTKNSKVNILTFHNFEIVFQQKKQAKLKKFWCSSQENANENALELVFLSRGKTRFFNGFFILIKSGSSTVSLFCIGHKCFELRVSYFE

Query:  DFSLHFWHHP
        DF+ + WH P
Subjt:  DFSLHFWHHP

A0A5A7VEB1 Retrotransposon protein, putative, Ty3-gypsy subclass, expressed2.4e-2853.59Show/hide
Query:  MLFQRVVNACPVLETTKNSKVNILTFHNFEIVFQQKKQAKLKKFWCSSQENANENALELVFLSRGKTRFFNGFFILIKSGSSTVSLFCIGHKCFELRVSY
        +LFQRV NA PV    K++             FQQ K AKLK FWCSSQE+A+ENA + VFLS  K R  +GF +L           C+GHK FEL+ SY
Subjt:  MLFQRVVNACPVLETTKNSKVNILTFHNFEIVFQQKKQAKLKKFWCSSQENANENALELVFLSRGKTRFFNGFFILIKSGSSTVSLFCIGHKCFELRVSY

Query:  FEDFSLHFWHHPSYIFPKYSSRSELVGGRTKVQPKTIKKMANALPTSGERSSS
         EDFSLH W  PS +F KY + S+LV GRTKVQ  TI+KMAN LPTSG+R SS
Subjt:  FEDFSLHFWHHPSYIFPKYSSRSELVGGRTKVQPKTIKKMANALPTSGERSSS

A0A5A7VGQ5 Uncharacterized protein2.2e-1048.75Show/hide
Query:  KKQAKLKKFWCSSQENANENALELVFLSRGKTRFFNGFFILIKSGSSTVSLFCIGHKCFELRVSYFEDFSLHFWHHPSYI
        +K+AK K FWC SQE+A++N+ + V  SRGK RF+NGFF+L +          +G+KCFEL  S  EDF LH  HH S++
Subjt:  KKQAKLKKFWCSSQENANENALELVFLSRGKTRFFNGFFILIKSGSSTVSLFCIGHKCFELRVSYFEDFSLHFWHHPSYI

A0A5A7VGQ5 Uncharacterized protein2.6e-0377.14Show/hide
Query:  YSSRSELVGGRTKVQPKTIKKMANALPTSGERSSS
        +S  SELVG RTKVQ  TI+K+ANALPTSGERSSS
Subjt:  YSSRSELVGGRTKVQPKTIKKMANALPTSGERSSS

A0A5D3BG85 Uncharacterized protein9.1e-1276.92Show/hide
Query:  EDFSLHFWHHPSYIFPKYSSRSELVGGRTKVQPKTIKKMANALPTSGERSSS
        +DFSLH WHH S IFP+Y S SELVG RTKVQ  TI+K+ANALPTSGERSSS
Subjt:  EDFSLHFWHHPSYIFPKYSSRSELVGGRTKVQPKTIKKMANALPTSGERSSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCTTTCAACGAGTGGTGAATGCTTGTCCGGTGTTAGAAACAACTAAAAATTCAAAAGTCAACATTTTGACTTTTCACAACTTTGAAATTGTATTTCAGCAAAAGAA
ACAGGCTAAGCTCAAGAAGTTCTGGTGTTCGTCCCAAGAAAATGCGAACGAGAATGCCCTGGAATTAGTTTTTCTATCTCGGGGTAAAACGCGGTTCTTCAACGGTTTCT
TTATTTTGATAAAAAGCGGTTCTTCAACGGTTTCTTTGTTTTGCATTGGTCATAAGTGTTTTGAGCTTCGAGTCTCATACTTCGAGGACTTTAGTCTACATTTCTGGCAT
CATCCCTCATACATTTTCCCAAAGTATAGCTCGAGAAGTGAGCTCGTTGGAGGGAGAACTAAGGTGCAACCCAAAACAATAAAAAAGATGGCCAATGCTCTTCCAACGAG
TGGCGAACGCTCGTCGAGTTTTAGAAACCACTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCTTTCAACGAGTGGTGAATGCTTGTCCGGTGTTAGAAACAACTAAAAATTCAAAAGTCAACATTTTGACTTTTCACAACTTTGAAATTGTATTTCAGCAAAAGAA
ACAGGCTAAGCTCAAGAAGTTCTGGTGTTCGTCCCAAGAAAATGCGAACGAGAATGCCCTGGAATTAGTTTTTCTATCTCGGGGTAAAACGCGGTTCTTCAACGGTTTCT
TTATTTTGATAAAAAGCGGTTCTTCAACGGTTTCTTTGTTTTGCATTGGTCATAAGTGTTTTGAGCTTCGAGTCTCATACTTCGAGGACTTTAGTCTACATTTCTGGCAT
CATCCCTCATACATTTTCCCAAAGTATAGCTCGAGAAGTGAGCTCGTTGGAGGGAGAACTAAGGTGCAACCCAAAACAATAAAAAAGATGGCCAATGCTCTTCCAACGAG
TGGCGAACGCTCGTCGAGTTTTAGAAACCACTGA
Protein sequenceShow/hide protein sequence
MLFQRVVNACPVLETTKNSKVNILTFHNFEIVFQQKKQAKLKKFWCSSQENANENALELVFLSRGKTRFFNGFFILIKSGSSTVSLFCIGHKCFELRVSYFEDFSLHFWH
HPSYIFPKYSSRSELVGGRTKVQPKTIKKMANALPTSGERSSSFRNH