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IVF0009734 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0009734
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionCCR4-NOT transcription complex subunit 1
Genome locationchr04:25443221..25443719
RNA-Seq ExpressionIVF0009734
SyntenyIVF0009734
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025991.1 CCR4-NOT transcription complex subunit 1 [Cucumis melo var. makuwa]2.02e-1261.54Show/hide
Query:  GNSSNKTLSKTHREPKWRKEGLGGSARL--DSVRLNSA-----------WFSARLGLVLGS--ARLGSTRLT-RLTRL
        GNSS ++L KTHREPKWRKEGLGG ARL  DS RL SA           WF +RLG  LGS  +RLGS RL  RLTRL
Subjt:  GNSSNKTLSKTHREPKWRKEGLGGSARL--DSVRLNSA-----------WFSARLGLVLGS--ARLGSTRLT-RLTRL
KAA0057143.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]1.74e-0943.31Show/hide
Query:  GSARLDSVRLNSAWFSARLGLVLGSARLGSTRLTRLTRLGSLGSLGFVCGSRLGLEAGLGSD------WMKTGSHGFDGSFFRRTTALGPDGRRRRERDA
        GSA+L S +L S W +ARL    GSA   S R  RLTRL  LGSLGFVCGSRLGLEAGLG +        + GSHG          + G   RRR   DA
Subjt:  GSARLDSVRLNSAWFSARLGLVLGSARLGSTRLTRLTRLGSLGSLGFVCGSRLGLEAGLGSD------WMKTGSHGFDGSFFRRTTALGPDGRRRRERDA

Query:  AACKLSLGLTAGGKLKVAAAVEIRRRR
           +L++  +   + ++   V  RR R
Subjt:  AACKLSLGLTAGGKLKVAAAVEIRRRR
TrEMBL top hitse value%identityAlignment
A0A5A7SP62 CCR4-NOT transcription complex subunit 12.3e-0948.44Show/hide
Query:  GNSSNKTLSKTHREPKWRKEGLGGSAR--LDSVRL-----------NSAWFSARLGLVLGS--ARLGSTRL-TRLTRLGS-LGSLGFVCGSRLGLEAGLG
        GNSS ++L KTHREPKWRKEGLGG AR  LDS RL            SAWF +RLG  LGS  +RLGS RL  RLTRL + L  L    GS  G  +  G
Subjt:  GNSSNKTLSKTHREPKWRKEGLGGSAR--LDSVRL-----------NSAWFSARLGLVLGS--ARLGSTRL-TRLTRLGS-LGSLGFVCGSRLGLEAGLG

Query:  SDWMKTGSHGFDGSFFRRTTALGPDGRR
        S     GS  F        + LG  G R
Subjt:  SDWMKTGSHGFDGSFFRRTTALGPDGRR
A0A5A7UMJ9 NBS-LRR type resistance protein2.6e-0843.31Show/hide
Query:  GSARLDSVRLNSAWFSARLGLVLGSARLGSTRLTRLTRLGSLGSLGFVCGSRLGLEAGLGSD------WMKTGSHGFDGSFFRRTTALGPDGRRRRERDA
        GSA+L S +L S W +ARL    GSA   S R  RLTRL  LGSLGFVCGSRLGLEAGLG +        + GSHG          + G   RRR   DA
Subjt:  GSARLDSVRLNSAWFSARLGLVLGSARLGSTRLTRLTRLGSLGSLGFVCGSRLGLEAGLGSD------WMKTGSHGFDGSFFRRTTALGPDGRRRRERDA

Query:  AACKLSLGLTAGGKLKVAAAVEIRRRR
           +L++  +   + ++   V  RR R
Subjt:  AACKLSLGLTAGGKLKVAAAVEIRRRR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACATTAGGGAATTCATCAAACAAAACCTTATCGAAGACTCACCGTGAACCGAAGTGGAGGAAGGAAGGCTTAGGTGGCTCGGCTCGACTCGACTCGGTTCGGCT
TAACTCGGCTTGGTTCTCGGCTCGGCTCGGCTTGGTTCTCGGCTCGGCTCGGCTCGGCTCGACTCGGCTCACGCGGCTCACTCGGCTCGGCTCACTCGGCTCACTCGGAT
TCGTTTGTGGCTCACGGCTCGGACTGGAAGCGGGTCTCGGGTCGGATTGGATGAAAACGGGCAGCCACGGTTTTGATGGTTCTTTCTTCCGGCGAACGACGGCGCTGGGA
CCCGACGGACGACGACGAAGAGAACGGGATGCGGCTGCTTGCAAGCTTTCGCTCGGACTGACGGCTGGCGGAAAACTCAAGGTTGCGGCGGCTGTGGAGATCCGGCGGCG
AAGAAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAACATTAGGGAATTCATCAAACAAAACCTTATCGAAGACTCACCGTGAACCGAAGTGGAGGAAGGAAGGCTTAGGTGGCTCGGCTCGACTCGACTCGGTTCGGCT
TAACTCGGCTTGGTTCTCGGCTCGGCTCGGCTTGGTTCTCGGCTCGGCTCGGCTCGGCTCGACTCGGCTCACGCGGCTCACTCGGCTCGGCTCACTCGGCTCACTCGGAT
TCGTTTGTGGCTCACGGCTCGGACTGGAAGCGGGTCTCGGGTCGGATTGGATGAAAACGGGCAGCCACGGTTTTGATGGTTCTTTCTTCCGGCGAACGACGGCGCTGGGA
CCCGACGGACGACGACGAAGAGAACGGGATGCGGCTGCTTGCAAGCTTTCGCTCGGACTGACGGCTGGCGGAAAACTCAAGGTTGCGGCGGCTGTGGAGATCCGGCGGCG
AAGAAGCTGA
Protein sequenceShow/hide protein sequence
MATLGNSSNKTLSKTHREPKWRKEGLGGSARLDSVRLNSAWFSARLGLVLGSARLGSTRLTRLTRLGSLGSLGFVCGSRLGLEAGLGSDWMKTGSHGFDGSFFRRTTALG
PDGRRRRERDAAACKLSLGLTAGGKLKVAAAVEIRRRRS