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IVF0009750 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0009750
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPolyadenylate-binding protein 2-like
Genome locationchr10:23217953..23223014
RNA-Seq ExpressionIVF0009750
SyntenyIVF0009750
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036316.1 polyadenylate-binding protein 2-like [Cucumis melo var. makuwa]1.71e-3882.93Show/hide
Query:  TETNSPKRKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK
        ++  +  R +   +VD ACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK
Subjt:  TETNSPKRKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK

KAA0060499.1 polyadenylate-binding protein 3-like isoform X2 [Cucumis melo var. makuwa]1.34e-3898.53Show/hide
Query:  VDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK
        VD ACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK
Subjt:  VDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK

TYK22852.1 polyadenylate-binding protein 3-like isoform X2 [Cucumis melo var. makuwa]1.32e-3998.53Show/hide
Query:  VDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK
        VD ACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK
Subjt:  VDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK

XP_011657966.1 polyadenylate-binding protein 3 isoform X2 [Cucumis sativus]5.40e-3997.06Show/hide
Query:  VDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK
        VD ACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEA+QEALLLNETELHGRQLKVQQK
Subjt:  VDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK

XP_038882560.1 polyadenylate-binding protein 3-like isoform X3 [Benincasa hispida]1.55e-3897.06Show/hide
Query:  VDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK
        VD ACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNE+ELHGRQLKVQQK
Subjt:  VDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK

TrEMBL top hitse value%identityAlignment
A0A0A0KG83 RRM domain-containing protein1.7e-2981.71Show/hide
Query:  TETNSPKRKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK
        ++  +  R +   +VD ACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEA+QEALLLNETELHGRQLKVQQK
Subjt:  TETNSPKRKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK

A0A5A7T2C2 Polyadenylate-binding protein 2-like1.3e-2982.93Show/hide
Query:  TETNSPKRKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK
        ++  +  R +   +VD ACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK
Subjt:  TETNSPKRKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK

A0A5A7V432 Polyadenylate-binding protein 3-like isoform X22.2e-2998.53Show/hide
Query:  VDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK
        VD ACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK
Subjt:  VDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK

A0A5D3DGW2 Polyadenylate-binding protein 3-like isoform X22.2e-2998.53Show/hide
Query:  VDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK
        VD ACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK
Subjt:  VDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK

A0A6J1BTY4 polyadenylate-binding protein 3-like isoform X11.7e-2982.35Show/hide
Query:  KNVTETNSPKRKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK
        +N  ET+S  R +   +VD ACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEF+EAEAVQEALLLNE+ELHGRQLKVQQK
Subjt:  KNVTETNSPKRKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK

SwissProt top hitse value%identityAlignment
O14327 Polyadenylate-binding protein 21.9e-1765.71Show/hide
Query:  SVDCACTPEEVQQHFQSCGTVNRVTILTDKF-GHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK
        +VD + TPEE+Q HF SCG+VNRVTIL DKF GHPKGFAY+EF E   V  ALLLN + LH R LKV  K
Subjt:  SVDCACTPEEVQQHFQSCGTVNRVTILTDKF-GHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK

Q93VI4 Polyadenylate-binding protein 16.9e-2878.67Show/hide
Query:  RKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK
        R +   +VD ACTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVE EAVQ +L+LNE+ELHGRQ+KV  K
Subjt:  RKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK

Q9DDY9 Polyadenylate-binding protein 2-A8.0e-1653.95Show/hide
Query:  RKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKF-GHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK
        R +   +VD   T EE++ HF  CG+VNRVTIL DKF GHPKGFAY+EF + E+V+ +L L+E+   GRQ+KV  K
Subjt:  RKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKF-GHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK

Q9FJN9 Polyadenylate-binding protein 26.9e-2881.33Show/hide
Query:  RKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK
        R +   +VD ACTPEEVQQHFQ+CGTV+RVTILTDKFG PKGFAYVEFVE EAVQEAL LNE+ELHGRQLKV QK
Subjt:  RKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK

Q9LX90 Polyadenylate-binding protein 31.3e-2678.67Show/hide
Query:  RKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK
        R +   +VD ACTPEEVQ HFQ+CGTVNRVTIL DKFG PKGFAYVEFVE EAVQEAL LNE+ELHGRQLKV  K
Subjt:  RKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK

Arabidopsis top hitse value%identityAlignment
AT5G10350.2 RNA-binding (RRM/RBD/RNP motifs) family protein9.3e-2878.67Show/hide
Query:  RKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK
        R +   +VD ACTPEEVQ HFQ+CGTVNRVTIL DKFG PKGFAYVEFVE EAVQEAL LNE+ELHGRQLKV  K
Subjt:  RKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK

AT5G51120.1 polyadenylate-binding protein 14.9e-2978.67Show/hide
Query:  RKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK
        R +   +VD ACTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVE EAVQ +L+LNE+ELHGRQ+KV  K
Subjt:  RKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK

AT5G51120.2 polyadenylate-binding protein 14.9e-2978.67Show/hide
Query:  RKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK
        R +   +VD ACTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVE EAVQ +L+LNE+ELHGRQ+KV  K
Subjt:  RKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK

AT5G51120.3 polyadenylate-binding protein 14.9e-2978.67Show/hide
Query:  RKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK
        R +   +VD ACTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVE EAVQ +L+LNE+ELHGRQ+KV  K
Subjt:  RKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK

AT5G65260.1 RNA-binding (RRM/RBD/RNP motifs) family protein4.9e-2981.33Show/hide
Query:  RKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK
        R +   +VD ACTPEEVQQHFQ+CGTV+RVTILTDKFG PKGFAYVEFVE EAVQEAL LNE+ELHGRQLKV QK
Subjt:  RKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATCTTCTAGAGCATACTGTTTGGATTTACAAAAATGTAACAGAGACCAATTCCCCGAAGCGGAAATTGAGATCCAGTAGTGTTGATTGTGCGTGTACACCTGAAGA
AGTGCAGCAGCATTTCCAATCTTGTGGTACTGTCAACAGGGTTACTATTCTCACGGATAAATTTGGTCATCCCAAGGGCTTTGCTTATGTGGAGTTTGTTGAAGCCGAAG
CTGTTCAGGAGGCACTTCTTTTAAACGAGACAGAGTTGCATGGAAGACAATTGAAGGTTCAACAAAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTATCTTCTAGAGCATACTGTTTGGATTTACAAAAATGTAACAGAGACCAATTCCCCGAAGCGGAAATTGAGATCCAGTAGTGTTGATTGTGCGTGTACACCTGAAGA
AGTGCAGCAGCATTTCCAATCTTGTGGTACTGTCAACAGGGTTACTATTCTCACGGATAAATTTGGTCATCCCAAGGGCTTTGCTTATGTGGAGTTTGTTGAAGCCGAAG
CTGTTCAGGAGGCACTTCTTTTAAACGAGACAGAGTTGCATGGAAGACAATTGAAGGTTCAACAAAAGTGA
Protein sequenceShow/hide protein sequence
MYLLEHTVWIYKNVTETNSPKRKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK