; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0009800 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0009800
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRibonuclease H
Genome locationchr01:15785122..15786342
RNA-Seq ExpressionIVF0009800
SyntenyIVF0009800
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036943.1 uncharacterized protein E6C27_scaffold86G00190 [Cucumis melo var. makuwa]1.05e-19965.02Show/hide
Query:  MLVVHQLNGEWETRDAKLIPYNDYICTIAQTFNSITFEHVPRESNQVTDALATLSAMFNVAYSENVQPIRMEKYKTPSYCMSLEREPNGKRWYHDIKHYI
        MLV+HQ+  EWETRDAKL+PY+ Y+  ++Q F  I+F+HVPRE N++ DALATL+ MF++     + PI++ K   P+YCM++  +   K WY DIK YI
Subjt:  MLVVHQLNGEWETRDAKLIPYNDYICTIAQTFNSITFEHVPRESNQVTDALATLSAMFNVAYSENVQPIRMEKYKTPSYCMSLEREPNGKRWYHDIKHYI

Query:  AYREYPPGASENSKRTIRRLAMEFFLNGEVLYKRNYGMTLLRCVDALETEKILEEIHEGVYRTHKNRHMMAMQVLRAGYFWLPMESNCIKYVRRCYKCQI
          REYP  ASEN KRTIRRLAM FFL+GEVLYKRN+ M LLRCVD  E ++I+ +I+EG+  TH N HMMA Q+LR+GY+W  MES+CIKY R C KCQI
Subjt:  AYREYPPGASENSKRTIRRLAMEFFLNGEVLYKRNYGMTLLRCVDALETEKILEEIHEGVYRTHKNRHMMAMQVLRAGYFWLPMESNCIKYVRRCYKCQI

Query:  YADKAHAPTFPLHVLTAPWPFSMWGLDVIGPIEPKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVVKFIRKDIICRYRLPERIIINNGKNMNNKLMEE
        Y DK H     LH+L+APWPFS+WG+DVIGPI+PKASNGHRFILVAIDYFTKW+EAASY +VT+  V+KFI+K++ICRY LPE II +N KN+NNK+M+E
Subjt:  YADKAHAPTFPLHVLTAPWPFSMWGLDVIGPIEPKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVVKFIRKDIICRYRLPERIIINNGKNMNNKLMEE

Query:  LCSQFKVKHSNSTLYRPKMNEAVEAANKNIKKILEKMSVTYRDWHEMLPFPLHGYRILVRTSTGATPFSLVYGFKVVLPVKVEVPSLRVIQEVELDEAKW
        LC QFK+ H NST YRPKMN AVEAANKNIK+I+EKM++TY+DWHEMLPF LHGYR  VRTST ATPFSLVYG +VVLP++VE+PSLRV+ E +LDEA+W
Subjt:  LCSQFKVKHSNSTLYRPKMNEAVEAANKNIKKILEKMSVTYRDWHEMLPFPLHGYRILVRTSTGATPFSLVYGFKVVLPVKVEVPSLRVIQEVELDEAKW

Query:  AQVRYE
         + RYE
Subjt:  AQVRYE

KAA0049671.1 uncharacterized protein E6C27_scaffold76G00060 [Cucumis melo var. makuwa]1.14e-295100Show/hide
Query:  MLVVHQLNGEWETRDAKLIPYNDYICTIAQTFNSITFEHVPRESNQVTDALATLSAMFNVAYSENVQPIRMEKYKTPSYCMSLEREPNGKRWYHDIKHYI
        MLVVHQLNGEWETRDAKLIPYNDYICTIAQTFNSITFEHVPRESNQVTDALATLSAMFNVAYSENVQPIRMEKYKTPSYCMSLEREPNGKRWYHDIKHYI
Subjt:  MLVVHQLNGEWETRDAKLIPYNDYICTIAQTFNSITFEHVPRESNQVTDALATLSAMFNVAYSENVQPIRMEKYKTPSYCMSLEREPNGKRWYHDIKHYI

Query:  AYREYPPGASENSKRTIRRLAMEFFLNGEVLYKRNYGMTLLRCVDALETEKILEEIHEGVYRTHKNRHMMAMQVLRAGYFWLPMESNCIKYVRRCYKCQI
        AYREYPPGASENSKRTIRRLAMEFFLNGEVLYKRNYGMTLLRCVDALETEKILEEIHEGVYRTHKNRHMMAMQVLRAGYFWLPMESNCIKYVRRCYKCQI
Subjt:  AYREYPPGASENSKRTIRRLAMEFFLNGEVLYKRNYGMTLLRCVDALETEKILEEIHEGVYRTHKNRHMMAMQVLRAGYFWLPMESNCIKYVRRCYKCQI

Query:  YADKAHAPTFPLHVLTAPWPFSMWGLDVIGPIEPKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVVKFIRKDIICRYRLPERIIINNGKNMNNKLMEE
        YADKAHAPTFPLHVLTAPWPFSMWGLDVIGPIEPKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVVKFIRKDIICRYRLPERIIINNGKNMNNKLMEE
Subjt:  YADKAHAPTFPLHVLTAPWPFSMWGLDVIGPIEPKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVVKFIRKDIICRYRLPERIIINNGKNMNNKLMEE

Query:  LCSQFKVKHSNSTLYRPKMNEAVEAANKNIKKILEKMSVTYRDWHEMLPFPLHGYRILVRTSTGATPFSLVYGFKVVLPVKVEVPSLRVIQEVELDEAKW
        LCSQFKVKHSNSTLYRPKMNEAVEAANKNIKKILEKMSVTYRDWHEMLPFPLHGYRILVRTSTGATPFSLVYGFKVVLPVKVEVPSLRVIQEVELDEAKW
Subjt:  LCSQFKVKHSNSTLYRPKMNEAVEAANKNIKKILEKMSVTYRDWHEMLPFPLHGYRILVRTSTGATPFSLVYGFKVVLPVKVEVPSLRVIQEVELDEAKW

Query:  AQVRYE
        AQVRYE
Subjt:  AQVRYE

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]3.58e-19869.21Show/hide
Query:  MLVVHQLNGEWETRDAKLIPYNDYICTIAQTFNSITFEHVPRESNQVTDALATLSAMFNVAYSENVQPIRMEKYKTPSYCMSLEREPNGKRWYHDIKHYI
        MLV+HQL GEWETRD KL+PY  +I  ++Q F+ I+F+++PRE+NQV DALATL+ MFN+  +E+V+PI++ +   P+ CMS+E EP+GK W+HDIK YI
Subjt:  MLVVHQLNGEWETRDAKLIPYNDYICTIAQTFNSITFEHVPRESNQVTDALATLSAMFNVAYSENVQPIRMEKYKTPSYCMSLEREPNGKRWYHDIKHYI

Query:  AYREYPPGASENSKRTIRRLAMEFFLNGEVLYKRNYGMTLLRCVDALETEKILEEIHEGVYRTHKNRHMMAMQVLRAGYFWLPMESNCIKYVRRCYKCQI
          +EYPP ASEN KRT+R+LA++FFLNGE+LYKRN+ M LLRCV+  +  +I+EEIHEGV  TH N HMMA Q+LRAGY+WL +E++CIKY R+C+KCQI
Subjt:  AYREYPPGASENSKRTIRRLAMEFFLNGEVLYKRNYGMTLLRCVDALETEKILEEIHEGVYRTHKNRHMMAMQVLRAGYFWLPMESNCIKYVRRCYKCQI

Query:  YADKAHAPTFPLHVLTAPWPFSMWGLDVIGPIEPKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVVKFIRKDIICRYRLPERIIINNGKNMNNKLMEE
        Y+DK HAP   LH LTAPWPFSMWG+DVIGPIEPKASNGH+FILVAIDYFTKWVEAASY+ VTK  VVKFI+K+IICRY LP+ II +N +N+NNKLM E
Subjt:  YADKAHAPTFPLHVLTAPWPFSMWGLDVIGPIEPKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVVKFIRKDIICRYRLPERIIINNGKNMNNKLMEE

Query:  LCSQFKVKHSNSTLYRPKMNEAVEAANKNIKKILEKMSVTYRDWHEMLPFPLHGYRILVRTSTGATPFSLVYGFKVVLPVKVEVPSLRVIQEVELDEAKW
        L  QFK+KH NST YRPKMN AVEAANKNIK+I+EKM+VTYRDWHEMLPF LHGYR  VRTSTGATPFSLVYG +VVLP++VE+PSLRVI E +L EA+W
Subjt:  LCSQFKVKHSNSTLYRPKMNEAVEAANKNIKKILEKMSVTYRDWHEMLPFPLHGYRILVRTSTGATPFSLVYGFKVVLPVKVEVPSLRVIQEVELDEAKW

Query:  AQVRYE
         Q RYE
Subjt:  AQVRYE

XP_022150030.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111018303 [Momordica charantia]2.16e-19868.23Show/hide
Query:  MLVVHQLNGEWETRDAKLIPYNDYICTIAQTFNSITFEHVPRESNQVTDALATLSAMFNVAYSENVQPIRMEKYKTPSYCMSLEREPNGKRWYHDIKHYI
        MLV+HQL GEWE RD KL+PY   I  ++Q F+ I+F+++PRE+NQV DALATL+ MFN+  +E+V+PI++ +    + CMS+E EP+G  W+HDIK YI
Subjt:  MLVVHQLNGEWETRDAKLIPYNDYICTIAQTFNSITFEHVPRESNQVTDALATLSAMFNVAYSENVQPIRMEKYKTPSYCMSLEREPNGKRWYHDIKHYI

Query:  AYREYPPGASENSKRTIRRLAMEFFLNGEVLYKRNYGMTLLRCVDALETEKILEEIHEGVYRTHKNRHMMAMQVLRAGYFWLPMESNCIKYVRRCYKCQI
          +EYPP ASEN KRT+R+LAM+FFLN E+LYKRN+ M LLRCV+  +  +I+EE+HE V  TH N HM+A Q+LRAGY+WL +E++CIKY R+C+KCQI
Subjt:  AYREYPPGASENSKRTIRRLAMEFFLNGEVLYKRNYGMTLLRCVDALETEKILEEIHEGVYRTHKNRHMMAMQVLRAGYFWLPMESNCIKYVRRCYKCQI

Query:  YADKAHAPTFPLHVLTAPWPFSMWGLDVIGPIEPKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVVKFIRKDIICRYRLPERIIINNGKNMNNKLMEE
        Y+DK HAP   LH LTAPWPFSMWG+DVIGPIEPKASNGHRFILVAIDYFTKWVEAASY+ VTK  VVKFI+K+IICRY LPE II +N +N+NNKLM E
Subjt:  YADKAHAPTFPLHVLTAPWPFSMWGLDVIGPIEPKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVVKFIRKDIICRYRLPERIIINNGKNMNNKLMEE

Query:  LCSQFKVKHSNSTLYRPKMNEAVEAANKNIKKILEKMSVTYRDWHEMLPFPLHGYRILVRTSTGATPFSLVYGFKVVLPVKVEVPSLRVIQEVELDEAKW
        LC QFK+KH NST YRPKMN AVEAANKNIK+I+EKM+VTYRDWHEMLPF LHGYR  VRTSTGATPFSLVYG + VLP++VE+PSLRVI E +L EA+W
Subjt:  LCSQFKVKHSNSTLYRPKMNEAVEAANKNIKKILEKMSVTYRDWHEMLPFPLHGYRILVRTSTGATPFSLVYGFKVVLPVKVEVPSLRVIQEVELDEAKW

Query:  AQVRYE
         Q RYE
Subjt:  AQVRYE

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]2.24e-19768.4Show/hide
Query:  LVVHQLNGEWETRDAKLIPYNDYICTIAQTFNSITFEHVPRESNQVTDALATLSAMFNVAYSENVQPIRMEKYKTPSYCMSLEREPNGKRWYHDIKHYIA
        LV+HQL GEWETRD KL+PY   I  ++Q F+ I+F+++PRE+NQV DALATL+ MFN+  +E+V+PI++ +   P+ CMS+E EP+G  W+HDIK YI 
Subjt:  LVVHQLNGEWETRDAKLIPYNDYICTIAQTFNSITFEHVPRESNQVTDALATLSAMFNVAYSENVQPIRMEKYKTPSYCMSLEREPNGKRWYHDIKHYIA

Query:  YREYPPGASENSKRTIRRLAMEFFLNGEVLYKRNYGMTLLRCVDALETEKILEEIHEGVYRTHKNRHMMAMQVLRAGYFWLPMESNCIKYVRRCYKCQIY
         +EY P ASEN KRT+R+LAM+FFLNGE+LYKRN+ M LLRCV+  +  +I+EE+HEGV  TH N HMMA Q+LRAGY+WL +E++CIKY R+C+KCQIY
Subjt:  YREYPPGASENSKRTIRRLAMEFFLNGEVLYKRNYGMTLLRCVDALETEKILEEIHEGVYRTHKNRHMMAMQVLRAGYFWLPMESNCIKYVRRCYKCQIY

Query:  ADKAHAPTFPLHVLTAPWPFSMWGLDVIGPIEPKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVVKFIRKDIICRYRLPERIIINNGKNMNNKLMEEL
        +DK HAPT  LH LTAPWPFSMWG+DVIGPIEPKAS+GHRFILVAIDYFTKWVEAASY+ VTK  VVKFI+K IICRY LPE II +N +N+NNKLM EL
Subjt:  ADKAHAPTFPLHVLTAPWPFSMWGLDVIGPIEPKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVVKFIRKDIICRYRLPERIIINNGKNMNNKLMEEL

Query:  CSQFKVKHSNSTLYRPKMNEAVEAANKNIKKILEKMSVTYRDWHEMLPFPLHGYRILVRTSTGATPFSLVYGFKVVLPVKVEVPSLRVIQEVELDEAKWA
        C QFK+KH NST YRPKMN AVEAANKNIK+I+EKM+VTY DWHEMLPF LHGYR  VRTSTG TPFSLVYG +VVL ++VE+PSLRVI E +L  A+W 
Subjt:  CSQFKVKHSNSTLYRPKMNEAVEAANKNIKKILEKMSVTYRDWHEMLPFPLHGYRILVRTSTGATPFSLVYGFKVVLPVKVEVPSLRVIQEVELDEAKWA

Query:  QVRYE
        Q RYE
Subjt:  QVRYE

TrEMBL top hitse value%identityAlignment
A0A5A7U7X5 Ribonuclease H5.1e-240100Show/hide
Query:  MLVVHQLNGEWETRDAKLIPYNDYICTIAQTFNSITFEHVPRESNQVTDALATLSAMFNVAYSENVQPIRMEKYKTPSYCMSLEREPNGKRWYHDIKHYI
        MLVVHQLNGEWETRDAKLIPYNDYICTIAQTFNSITFEHVPRESNQVTDALATLSAMFNVAYSENVQPIRMEKYKTPSYCMSLEREPNGKRWYHDIKHYI
Subjt:  MLVVHQLNGEWETRDAKLIPYNDYICTIAQTFNSITFEHVPRESNQVTDALATLSAMFNVAYSENVQPIRMEKYKTPSYCMSLEREPNGKRWYHDIKHYI

Query:  AYREYPPGASENSKRTIRRLAMEFFLNGEVLYKRNYGMTLLRCVDALETEKILEEIHEGVYRTHKNRHMMAMQVLRAGYFWLPMESNCIKYVRRCYKCQI
        AYREYPPGASENSKRTIRRLAMEFFLNGEVLYKRNYGMTLLRCVDALETEKILEEIHEGVYRTHKNRHMMAMQVLRAGYFWLPMESNCIKYVRRCYKCQI
Subjt:  AYREYPPGASENSKRTIRRLAMEFFLNGEVLYKRNYGMTLLRCVDALETEKILEEIHEGVYRTHKNRHMMAMQVLRAGYFWLPMESNCIKYVRRCYKCQI

Query:  YADKAHAPTFPLHVLTAPWPFSMWGLDVIGPIEPKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVVKFIRKDIICRYRLPERIIINNGKNMNNKLMEE
        YADKAHAPTFPLHVLTAPWPFSMWGLDVIGPIEPKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVVKFIRKDIICRYRLPERIIINNGKNMNNKLMEE
Subjt:  YADKAHAPTFPLHVLTAPWPFSMWGLDVIGPIEPKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVVKFIRKDIICRYRLPERIIINNGKNMNNKLMEE

Query:  LCSQFKVKHSNSTLYRPKMNEAVEAANKNIKKILEKMSVTYRDWHEMLPFPLHGYRILVRTSTGATPFSLVYGFKVVLPVKVEVPSLRVIQEVELDEAKW
        LCSQFKVKHSNSTLYRPKMNEAVEAANKNIKKILEKMSVTYRDWHEMLPFPLHGYRILVRTSTGATPFSLVYGFKVVLPVKVEVPSLRVIQEVELDEAKW
Subjt:  LCSQFKVKHSNSTLYRPKMNEAVEAANKNIKKILEKMSVTYRDWHEMLPFPLHGYRILVRTSTGATPFSLVYGFKVVLPVKVEVPSLRVIQEVELDEAKW

Query:  AQVRYE
        AQVRYE
Subjt:  AQVRYE

A0A6J1CNY7 Ribonuclease H6.1e-16968.47Show/hide
Query:  MLVVHQLNGEWETRDAKLIPYNDYICTIAQTFNSITFEHVPRESNQVTDALATLSAMFNVAYSENVQPIRMEKYKTPSYCMSLEREPNGKRWYHDIKHYI
        MLV+HQL GEWETRD KL+PY   I  ++Q F+ ++F+++PRE+NQV DALATL+ MFN+  +E+V PI++ +   P+ CMS+E EP+G  W+HDIK YI
Subjt:  MLVVHQLNGEWETRDAKLIPYNDYICTIAQTFNSITFEHVPRESNQVTDALATLSAMFNVAYSENVQPIRMEKYKTPSYCMSLEREPNGKRWYHDIKHYI

Query:  AYREYPPGASENSKRTIRRLAMEFFLNGEVLYKRNYGMTLLRCVDALETEKILEEIHEGVYRTHKNRHMMAMQVLRAGYFWLPMESNCIKYVRRCYKCQI
          +EYPP ASEN KRT R+LAM+FFLNGE+LYKRN+ M LLRCV+  +  +I+EE+HEGV  TH N HM+A Q+LRAGY+WL + ++CIKY R+C+KCQI
Subjt:  AYREYPPGASENSKRTIRRLAMEFFLNGEVLYKRNYGMTLLRCVDALETEKILEEIHEGVYRTHKNRHMMAMQVLRAGYFWLPMESNCIKYVRRCYKCQI

Query:  YADKAHAPTFPLHVLTAPWPFSMWGLDVIGPIEPKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVVKFIRKDIICRYRLPERIIINNGKNMNNKLMEE
        YADK HAP   LH LTAPWPFSMWG+DVIGPIEPKASNGHRFILVAIDYFT WVEAASY+ VTK  VVKFI+K+IICRY LPE II +N +N+NNKL  E
Subjt:  YADKAHAPTFPLHVLTAPWPFSMWGLDVIGPIEPKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVVKFIRKDIICRYRLPERIIINNGKNMNNKLMEE

Query:  LCSQFKVKHSNSTLYRPKMNEAVEAANKNIKKILEKMSVTYRDWHEMLPFPLHGYRILVRTSTGATPFSLVYGFKVVLPVKVEVPSLRVIQEVELDEAKW
        LC QFK+KH NST YRPKMN AVEAANKNIK+I+EKM+VTYRDWH MLPF LHGYR  VRTSTGATPFSLVYG  VVLP++VE+PSLRVI E +L EA+W
Subjt:  LCSQFKVKHSNSTLYRPKMNEAVEAANKNIKKILEKMSVTYRDWHEMLPFPLHGYRILVRTSTGATPFSLVYGFKVVLPVKVEVPSLRVIQEVELDEAKW

Query:  AQVRYE
         Q RYE
Subjt:  AQVRYE

A0A6J1D099 Ribonuclease H7.7e-17269.21Show/hide
Query:  MLVVHQLNGEWETRDAKLIPYNDYICTIAQTFNSITFEHVPRESNQVTDALATLSAMFNVAYSENVQPIRMEKYKTPSYCMSLEREPNGKRWYHDIKHYI
        MLV+HQL GEWETRD KL+PY  +I  ++Q F+ I+F+++PRE+NQV DALATL+ MFN+  +E+V+PI++ +   P+ CMS+E EP+GK W+HDIK YI
Subjt:  MLVVHQLNGEWETRDAKLIPYNDYICTIAQTFNSITFEHVPRESNQVTDALATLSAMFNVAYSENVQPIRMEKYKTPSYCMSLEREPNGKRWYHDIKHYI

Query:  AYREYPPGASENSKRTIRRLAMEFFLNGEVLYKRNYGMTLLRCVDALETEKILEEIHEGVYRTHKNRHMMAMQVLRAGYFWLPMESNCIKYVRRCYKCQI
          +EYPP ASEN KRT+R+LA++FFLNGE+LYKRN+ M LLRCV+  +  +I+EEIHEGV  TH N HMMA Q+LRAGY+WL +E++CIKY R+C+KCQI
Subjt:  AYREYPPGASENSKRTIRRLAMEFFLNGEVLYKRNYGMTLLRCVDALETEKILEEIHEGVYRTHKNRHMMAMQVLRAGYFWLPMESNCIKYVRRCYKCQI

Query:  YADKAHAPTFPLHVLTAPWPFSMWGLDVIGPIEPKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVVKFIRKDIICRYRLPERIIINNGKNMNNKLMEE
        Y+DK HAP   LH LTAPWPFSMWG+DVIGPIEPKASNGH+FILVAIDYFTKWVEAASY+ VTK  VVKFI+K+IICRY LP+ II +N +N+NNKLM E
Subjt:  YADKAHAPTFPLHVLTAPWPFSMWGLDVIGPIEPKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVVKFIRKDIICRYRLPERIIINNGKNMNNKLMEE

Query:  LCSQFKVKHSNSTLYRPKMNEAVEAANKNIKKILEKMSVTYRDWHEMLPFPLHGYRILVRTSTGATPFSLVYGFKVVLPVKVEVPSLRVIQEVELDEAKW
        L  QFK+KH NST YRPKMN AVEAANKNIK+I+EKM+VTYRDWHEMLPF LHGYR  VRTSTGATPFSLVYG +VVLP++VE+PSLRVI E +L EA+W
Subjt:  LCSQFKVKHSNSTLYRPKMNEAVEAANKNIKKILEKMSVTYRDWHEMLPFPLHGYRILVRTSTGATPFSLVYGFKVVLPVKVEVPSLRVIQEVELDEAKW

Query:  AQVRYE
         Q RYE
Subjt:  AQVRYE

A0A6J1D7C7 Ribonuclease H8.0e-16968.23Show/hide
Query:  MLVVHQLNGEWETRDAKLIPYNDYICTIAQTFNSITFEHVPRESNQVTDALATLSAMFNVAYSENVQPIRMEKYKTPSYCMSLEREPNGKRWYHDIKHYI
        MLV+HQL GEWE RD KL+PY   I  ++Q F+ I+F+++PRE+NQV DALATL+ MFN+  +E+V+PI++ +    + CMS+E EP+G  W+HDIK YI
Subjt:  MLVVHQLNGEWETRDAKLIPYNDYICTIAQTFNSITFEHVPRESNQVTDALATLSAMFNVAYSENVQPIRMEKYKTPSYCMSLEREPNGKRWYHDIKHYI

Query:  AYREYPPGASENSKRTIRRLAMEFFLNGEVLYKRNYGMTLLRCVDALETEKILEEIHEGVYRTHKNRHMMAMQVLRAGYFWLPMESNCIKYVRRCYKCQI
          +EYPP ASEN KRT+R+LAM+FFLN E+LYKRN+ M LLRCV+  +  +I+EE+HE V  TH N HM+A Q+LRAGY+WL +E++CIKY R+C+KCQI
Subjt:  AYREYPPGASENSKRTIRRLAMEFFLNGEVLYKRNYGMTLLRCVDALETEKILEEIHEGVYRTHKNRHMMAMQVLRAGYFWLPMESNCIKYVRRCYKCQI

Query:  YADKAHAPTFPLHVLTAPWPFSMWGLDVIGPIEPKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVVKFIRKDIICRYRLPERIIINNGKNMNNKLMEE
        Y+DK HAP   LH LTAPWPFSMWG+DVIGPIEPKASNGHRFILVAIDYFTKWVEAASY+ VTK  VVKFI+K+IICRY LPE II +N +N+NNKLM E
Subjt:  YADKAHAPTFPLHVLTAPWPFSMWGLDVIGPIEPKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVVKFIRKDIICRYRLPERIIINNGKNMNNKLMEE

Query:  LCSQFKVKHSNSTLYRPKMNEAVEAANKNIKKILEKMSVTYRDWHEMLPFPLHGYRILVRTSTGATPFSLVYGFKVVLPVKVEVPSLRVIQEVELDEAKW
        LC QFK+KH NST YRPKMN AVEAANKNIK+I+EKM+VTYRDWHEMLPF LHGYR  VRTSTGATPFSLVYG + VLP++VE+PSLRVI E +L EA+W
Subjt:  LCSQFKVKHSNSTLYRPKMNEAVEAANKNIKKILEKMSVTYRDWHEMLPFPLHGYRILVRTSTGATPFSLVYGFKVVLPVKVEVPSLRVIQEVELDEAKW

Query:  AQVRYE
         Q RYE
Subjt:  AQVRYE

A0A6J1E2J7 Ribonuclease H8.0e-16967.98Show/hide
Query:  MLVVHQLNGEWETRDAKLIPYNDYICTIAQTFNSITFEHVPRESNQVTDALATLSAMFNVAYSENVQPIRMEKYKTPSYCMSLEREPNGKRWYHDIKHYI
        MLV+HQL GEWETRD KL+PY   I  ++Q F+ I+F+++PRE+NQV DALATL+ MFN+  +E+V PI++ +   P+ CMS+E EP+G  W+H+IK YI
Subjt:  MLVVHQLNGEWETRDAKLIPYNDYICTIAQTFNSITFEHVPRESNQVTDALATLSAMFNVAYSENVQPIRMEKYKTPSYCMSLEREPNGKRWYHDIKHYI

Query:  AYREYPPGASENSKRTIRRLAMEFFLNGEVLYKRNYGMTLLRCVDALETEKILEEIHEGVYRTHKNRHMMAMQVLRAGYFWLPMESNCIKYVRRCYKCQI
          +EYPP ASEN KRT+R+LAM+FFLNGE+LYKRN+ M LLRCV+  +  +I+EE+HEGV  TH N HMMA Q+LRAGY+WL + ++CIKY R+C+KCQI
Subjt:  AYREYPPGASENSKRTIRRLAMEFFLNGEVLYKRNYGMTLLRCVDALETEKILEEIHEGVYRTHKNRHMMAMQVLRAGYFWLPMESNCIKYVRRCYKCQI

Query:  YADKAHAPTFPLHVLTAPWPFSMWGLDVIGPIEPKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVVKFIRKDIICRYRLPERIIINNGKNMNNKLMEE
        Y+DK HAP   LH LTAPWPFSMWG+D+IGPIEPKASNGHRFILVAIDYFTKWVEAAS + VTK  VVKFI+ +IICRY LP+ II +N +N+NNKLM E
Subjt:  YADKAHAPTFPLHVLTAPWPFSMWGLDVIGPIEPKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVVKFIRKDIICRYRLPERIIINNGKNMNNKLMEE

Query:  LCSQFKVKHSNSTLYRPKMNEAVEAANKNIKKILEKMSVTYRDWHEMLPFPLHGYRILVRTSTGATPFSLVYGFKVVLPVKVEVPSLRVIQEVELDEAKW
        LC  FK+KH NST YRPKMN AVEAANKNIK+I+EKM+VTYRDWHEMLPF LHGYR  VRTSTGATPFSLVYG K VLP++VE+PSLRVI E +L EA+W
Subjt:  LCSQFKVKHSNSTLYRPKMNEAVEAANKNIKKILEKMSVTYRDWHEMLPFPLHGYRILVRTSTGATPFSLVYGFKVVLPVKVEVPSLRVIQEVELDEAKW

Query:  AQVRYE
         Q RYE
Subjt:  AQVRYE

SwissProt top hitse value%identityAlignment
P03355 Gag-Pol polyprotein3.0e-1129.49Show/hide
Query:  PFSMWGLDVIGPIEPKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVVKFIRKDIICRYRLPERIIINNGKNMNNKLMEELCSQFKVKHSNSTLYRPKM
        P + W +D    I+P    G++++LV ID F+ W+EA   K  T + V K + ++I  R+ +P+ +  +NG    +K+ + +     +       YRP+ 
Subjt:  PFSMWGLDVIGPIEPKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVVKFIRKDIICRYRLPERIIINNGKNMNNKLMEELCSQFKVKHSNSTLYRPKM

Query:  NEAVEAANKNIKKILEKMSVT--YRDWHEMLPFPLHGYRILVRTSTGATPFSLVYG
        +  VE  N+ IK+ L K+++    RDW  +LP  L+  R       G TP+ ++YG
Subjt:  NEAVEAANKNIKKILEKMSVT--YRDWHEMLPFPLHGYRILVRTSTGATPFSLVYG

P03360 Gag-Pol polyprotein (Fragment)5.2e-1629.07Show/hide
Query:  KILEEIHEGVYRTHKNRHMMAMQVLRAGYFWLPMESNCIKYVRRCYKC-QIYADKAHAPTFPLHVLTAPWPFSMWGLDVIGPIEPKASNGHRFILVAIDY
        K+LE+ H     TH     +  +++R  Y    +         RC  C Q+    A         +    P   W +D    I   A  G++++LV +D 
Subjt:  KILEEIHEGVYRTHKNRHMMAMQVLRAGYFWLPMESNCIKYVRRCYKC-QIYADKAHAPTFPLHVLTAPWPFSMWGLDVIGPIEPKASNGHRFILVAIDY

Query:  FTKWVEAASYKSVTKQAVVKFIRKDIICRYRLPERIIINNGKNMNNKLMEELCSQFKVKHSNSTLYRPKMNEAVEAANKNIKKILEKMSV-TYRDWHEML
        F+ WVEA   K  T Q V+K +  DII R+ LP +I  +NG     K+ ++LC    V       YRP+ +  VE  N+ +K+ + K+ + T  DW  +L
Subjt:  FTKWVEAASYKSVTKQAVVKFIRKDIICRYRLPERIIINNGKNMNNKLMEELCSQFKVKHSNSTLYRPKMNEAVEAANKNIKKILEKMSV-TYRDWHEML

Query:  PFPLHGYRILVRTSTGATPFSLVYGFK
        P  L   R       G +PF ++YG K
Subjt:  PFPLHGYRILVRTSTGATPFSLVYGFK

Q2F7J0 Gag-Pol polyprotein3.0e-1125.1Show/hide
Query:  YKRNYGMTLLRCVDALETEKILEEIHEGVYRTHKN-RHMMAMQVLRAGYFWLPMESNCIKYV-RRCYKC-QIYADKAHAPTFPLHVLTAPWPFSMWGLDV
        Y +  G  +L+    +  + + E +      TH + + M A+       +++      I+YV   C  C Q+ A KA         +    P + W +D 
Subjt:  YKRNYGMTLLRCVDALETEKILEEIHEGVYRTHKN-RHMMAMQVLRAGYFWLPMESNCIKYV-RRCYKC-QIYADKAHAPTFPLHVLTAPWPFSMWGLDV

Query:  IGPIEPKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVVKFIRKDIICRYRLPERIIINNGKNMNNKLMEELCSQFKVKHSNSTLYRPKMNEAVEAANK
           ++P    G++++LV +D F+ WVEA   K  T + V K + +DI  R+ +P+ +  +NG    +++ + +     +       YRP+ +  VE  N+
Subjt:  IGPIEPKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVVKFIRKDIICRYRLPERIIINNGKNMNNKLMEELCSQFKVKHSNSTLYRPKMNEAVEAANK

Query:  NIKKILEKMSVT--YRDWHEMLPFPLHGYRILVRTSTGATPFSLVYG
         IK+ L K+++    RDW  +LP  L+  R       G TP+ ++YG
Subjt:  NIKKILEKMSVT--YRDWHEMLPFPLHGYRILVRTSTGATPFSLVYG

Q2F7J3 Gag-Pol polyprotein1.3e-1125.1Show/hide
Query:  YKRNYGMTLLRCVDALETEKILEEIHEGVYRTHKN-RHMMAMQVLRAGYFWLPMESNCIKYV-RRCYKC-QIYADKAHAPTFPLHVLTAPWPFSMWGLDV
        Y +  G  +L+    +  + + E +      TH + + M A+       +++      I+YV   C  C Q+ A KA         +    P + W +D 
Subjt:  YKRNYGMTLLRCVDALETEKILEEIHEGVYRTHKN-RHMMAMQVLRAGYFWLPMESNCIKYV-RRCYKC-QIYADKAHAPTFPLHVLTAPWPFSMWGLDV

Query:  IGPIEPKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVVKFIRKDIICRYRLPERIIINNGKNMNNKLMEELCSQFKVKHSNSTLYRPKMNEAVEAANK
           ++P    G++++LV +D F+ WVEA   K  T + V K + +DI  R+ +P+ +  +NG    +++ + +     +       YRP+ +  VE  N+
Subjt:  IGPIEPKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVVKFIRKDIICRYRLPERIIINNGKNMNNKLMEELCSQFKVKHSNSTLYRPKMNEAVEAANK

Query:  NIKKILEKMSVT--YRDWHEMLPFPLHGYRILVRTSTGATPFSLVYG
         IK+ L K+++    RDW  +LP  L+  R       G TP+ ++YG
Subjt:  NIKKILEKMSVT--YRDWHEMLPFPLHGYRILVRTSTGATPFSLVYG

Q9TTC1 Gag-Pol polyprotein1.0e-1126.91Show/hide
Query:  EGVYRTHKNRHM---MAMQVLRAGYFWLPMESNCIKYVRRCYKCQIYADKAHAPTF--PLHVLTAPWPFSMWGLDVIGPIEPKASNGHRFILVAIDYFTK
        E + R H+  H+     +Q++    F +P   + ++ +    KCQ+ A      T+  P        P   W +D    ++P    G+R++LV ID F+ 
Subjt:  EGVYRTHKNRHM---MAMQVLRAGYFWLPMESNCIKYVRRCYKCQIYADKAHAPTF--PLHVLTAPWPFSMWGLDVIGPIEPKASNGHRFILVAIDYFTK

Query:  WVEAASYKSVTKQAVVKFIRKDIICRYRLPERIIINNGKNMNNKLMEELCSQFKVKHSNSTLYRPKMNEAVEAANKNIKKILEKMSVTY--RDWHEMLPF
        WVEA   K+ T   V K I ++I+ R+ +P+ +  +NG     ++ + L +Q  +       YRP+ +  VE  N+ IK+ L K+++    +DW  +LP 
Subjt:  WVEAASYKSVTKQAVVKFIRKDIICRYRLPERIIINNGKNMNNKLMEELCSQFKVKHSNSTLYRPKMNEAVEAANKNIKKILEKMSVTY--RDWHEMLPF

Query:  PLHGYRILVRTSTGATPFSLVYG
         L   R       G TP+ +++G
Subjt:  PLHGYRILVRTSTGATPFSLVYG

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGTTGTACATCAGCTGAATGGGGAATGGGAGACGAGGGATGCTAAATTGATCCCTTATAACGATTATATCTGCACAATAGCTCAAACTTTTAATTCAATAACGTT
TGAACACGTCCCACGCGAAAGCAATCAGGTTACAGATGCATTAGCCACTCTTTCTGCCATGTTTAATGTAGCTTACAGTGAAAATGTTCAACCCATAAGGATGGAGAAGT
ATAAGACACCATCCTACTGTATGAGCCTCGAGCGAGAACCTAATGGTAAACGTTGGTATCATGATATTAAGCACTACATTGCATATCGGGAGTATCCACCAGGGGCATCA
GAAAATAGTAAGCGCACCATTAGAAGGTTGGCCATGGAGTTCTTTCTAAATGGTGAAGTATTATATAAAAGAAATTACGGTATGACTCTACTGCGATGTGTCGATGCTTT
GGAAACCGAAAAGATTTTGGAAGAAATTCATGAAGGAGTGTATAGGACGCATAAAAATAGACACATGATGGCGATGCAAGTTTTACGTGCTGGTTATTTTTGGTTGCCCA
TGGAATCAAATTGCATCAAATATGTGAGAAGATGCTATAAATGTCAAATATACGCAGATAAAGCGCATGCTCCAACCTTTCCATTGCATGTGTTGACGGCTCCATGGCCT
TTCTCCATGTGGGGTTTGGATGTAATTGGACCCATTGAGCCAAAGGCATCAAATGGCCATCGATTCATTTTGGTAGCCATAGATTATTTTACGAAGTGGGTAGAGGCTGC
TTCATACAAAAGTGTCACCAAGCAGGCTGTTGTCAAGTTCATACGAAAGGACATTATATGTCGGTATCGTTTACCTGAGCGCATCATCATCAATAATGGAAAAAACATGA
ATAATAAATTAATGGAGGAGTTATGCAGTCAGTTCAAGGTTAAACACTCTAATTCCACTCTTTATCGCCCTAAGATGAATGAGGCAGTGGAAGCAGCAAACAAAAATATC
AAAAAGATTCTCGAGAAAATGTCGGTCACTTATAGAGATTGGCATGAAATGCTACCTTTCCCATTGCATGGATATAGAATATTAGTTCGCACGTCAACAGGGGCAACCCC
TTTTTCACTAGTGTATGGTTTCAAAGTTGTTTTACCTGTTAAAGTTGAGGTGCCATCCCTTAGGGTAATCCAAGAGGTAGAACTAGATGAAGCAAAGTGGGCTCAAGTAA
GGTACGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGGTTGTACATCAGCTGAATGGGGAATGGGAGACGAGGGATGCTAAATTGATCCCTTATAACGATTATATCTGCACAATAGCTCAAACTTTTAATTCAATAACGTT
TGAACACGTCCCACGCGAAAGCAATCAGGTTACAGATGCATTAGCCACTCTTTCTGCCATGTTTAATGTAGCTTACAGTGAAAATGTTCAACCCATAAGGATGGAGAAGT
ATAAGACACCATCCTACTGTATGAGCCTCGAGCGAGAACCTAATGGTAAACGTTGGTATCATGATATTAAGCACTACATTGCATATCGGGAGTATCCACCAGGGGCATCA
GAAAATAGTAAGCGCACCATTAGAAGGTTGGCCATGGAGTTCTTTCTAAATGGTGAAGTATTATATAAAAGAAATTACGGTATGACTCTACTGCGATGTGTCGATGCTTT
GGAAACCGAAAAGATTTTGGAAGAAATTCATGAAGGAGTGTATAGGACGCATAAAAATAGACACATGATGGCGATGCAAGTTTTACGTGCTGGTTATTTTTGGTTGCCCA
TGGAATCAAATTGCATCAAATATGTGAGAAGATGCTATAAATGTCAAATATACGCAGATAAAGCGCATGCTCCAACCTTTCCATTGCATGTGTTGACGGCTCCATGGCCT
TTCTCCATGTGGGGTTTGGATGTAATTGGACCCATTGAGCCAAAGGCATCAAATGGCCATCGATTCATTTTGGTAGCCATAGATTATTTTACGAAGTGGGTAGAGGCTGC
TTCATACAAAAGTGTCACCAAGCAGGCTGTTGTCAAGTTCATACGAAAGGACATTATATGTCGGTATCGTTTACCTGAGCGCATCATCATCAATAATGGAAAAAACATGA
ATAATAAATTAATGGAGGAGTTATGCAGTCAGTTCAAGGTTAAACACTCTAATTCCACTCTTTATCGCCCTAAGATGAATGAGGCAGTGGAAGCAGCAAACAAAAATATC
AAAAAGATTCTCGAGAAAATGTCGGTCACTTATAGAGATTGGCATGAAATGCTACCTTTCCCATTGCATGGATATAGAATATTAGTTCGCACGTCAACAGGGGCAACCCC
TTTTTCACTAGTGTATGGTTTCAAAGTTGTTTTACCTGTTAAAGTTGAGGTGCCATCCCTTAGGGTAATCCAAGAGGTAGAACTAGATGAAGCAAAGTGGGCTCAAGTAA
GGTACGAGTAA
Protein sequenceShow/hide protein sequence
MLVVHQLNGEWETRDAKLIPYNDYICTIAQTFNSITFEHVPRESNQVTDALATLSAMFNVAYSENVQPIRMEKYKTPSYCMSLEREPNGKRWYHDIKHYIAYREYPPGAS
ENSKRTIRRLAMEFFLNGEVLYKRNYGMTLLRCVDALETEKILEEIHEGVYRTHKNRHMMAMQVLRAGYFWLPMESNCIKYVRRCYKCQIYADKAHAPTFPLHVLTAPWP
FSMWGLDVIGPIEPKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVVKFIRKDIICRYRLPERIIINNGKNMNNKLMEELCSQFKVKHSNSTLYRPKMNEAVEAANKNI
KKILEKMSVTYRDWHEMLPFPLHGYRILVRTSTGATPFSLVYGFKVVLPVKVEVPSLRVIQEVELDEAKWAQVRYE