; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0009813 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0009813
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase
Genome locationchr01:22749218..22750722
RNA-Seq ExpressionIVF0009813
SyntenyIVF0009813
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026281.1 reverse transcriptase [Cucumis melo var. makuwa]1.52e-23081.77Show/hide
Query:  MGEAAVSIGQLGSLIAHFQVRPILIDRIIKAQLDDAMMRKLAEEVRQNQRLNYSLRGDGAFMKYDRLCVPSDQAIKVQILKEAHSSAYAMHPGSTKMYRT
        MGEAAVSIGQLGSLIAHFQVRPILIDRIIKAQLDDAMMRKLAEEVRQNQRLNYSLRGDGAFMKYDRLCVPSDQAIKVQILKEAHSSAYAMHPGSTKMYRT
Subjt:  MGEAAVSIGQLGSLIAHFQVRPILIDRIIKAQLDDAMMRKLAEEVRQNQRLNYSLRGDGAFMKYDRLCVPSDQAIKVQILKEAHSSAYAMHPGSTKMYRT

Query:  LKKHYWWPTMKCEIADYVVKCLICQQVKPERQRPAELLNPLPVLEWKWEHVTMDFLFGLPRTTIGHEGIWALYGRRCR---------TPMCW--------
        LKKHYWWPTMKCEIADYV KCLICQQVKPERQRPAELLNPLPVLEWKWEHVTMDFLFGLPRTTIGHEGIW +  R  R         T   W        
Subjt:  LKKHYWWPTMKCEIADYVVKCLICQQVKPERQRPAELLNPLPVLEWKWEHVTMDFLFGLPRTTIGHEGIWALYGRRCR---------TPMCW--------

Query:  -------------DEVGERKLVGLE------------LVQTTSENVKIISGSYADKRRRVLEFEVGDKVFLKLSPWKGVLRFGGKGKLSPRFIGPYEILE
                     D+  ER +  LE            +V+     +K+  G+   KRRRVLEFEVGDKVFLKLSPWKGVLRFGGKGKLSPRFIGPYEILE
Subjt:  -------------DEVGERKLVGLE------------LVQTTSENVKIISGSYADKRRRVLEFEVGDKVFLKLSPWKGVLRFGGKGKLSPRFIGPYEILE

Query:  RIGPVAHRLALPMELSRIHEIFHVSMLRKYVPDSSYILEAQPVHLKENLYYEEEPIQILHKKEQVLRNKVIPLVKVLWRNHNTEEATWETEQAMKAQYPH
        RIGPVAHRLALPMELSRIHEIFHVSMLRKYVPDSSYILEAQPVHLKENLYYEEEPIQILHKKEQVLRNKVIPLVKVLWRNHNTEEATWETEQAMKAQYPH
Subjt:  RIGPVAHRLALPMELSRIHEIFHVSMLRKYVPDSSYILEAQPVHLKENLYYEEEPIQILHKKEQVLRNKVIPLVKVLWRNHNTEEATWETEQAMKAQYPH

Query:  LFTSSP
        LFTSSP
Subjt:  LFTSSP

KAA0035225.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]8.90e-15867.27Show/hide
Query:  MGEAAVSIGQLGSLIAHFQVRPILIDRIIKAQLDDAMMRKLAEEVRQNQRLNYSLRGDGAFMKYDRLCVPSDQAIKVQILKEAHSSAYAMHPGSTKMYRT
        M EAAVS+G+LGSLIAHFQV+PILIDRIIKAQLDDA +RKLAEEVRQNQRLNYSL+ D A MKYDRLCVPSDQ IK QILKEAHSSAYAMHPGSTK+Y T
Subjt:  MGEAAVSIGQLGSLIAHFQVRPILIDRIIKAQLDDAMMRKLAEEVRQNQRLNYSLRGDGAFMKYDRLCVPSDQAIKVQILKEAHSSAYAMHPGSTKMYRT

Query:  LKKHYWWPTMKCEIADYVVKCLICQQVKPERQRPAELLNPLPVLEWKWEHVTMDF-------------LFGLPRTTIGHEG------IWALYGRRCRTPM
        LKKHYWW  MK EIADYV KCLICQQVKPERQRPA LLNPLPVLEWKWEHVT                 +G P + +           W    +   T +
Subjt:  LKKHYWWPTMKCEIADYVVKCLICQQVKPERQRPAELLNPLPVLEWKWEHVTMDF-------------LFGLPRTTIGHEG------IWALYGRRCRTPM

Query:  CWDEVGERKLVGLE--LVQTTSENVKIISGSYADKRRRVLEFEVGDKVFLKLSPWKGVLRFGGKGKLSPRFIGPYEILERIGPVAHRLALPMELSRIHEI
         +      +  G     +QT  + ++  +  + D    V+E         K S    VLRFG KGKLSPRFI PYEILERIGPVA+RL LPMELSRIH++
Subjt:  CWDEVGERKLVGLE--LVQTTSENVKIISGSYADKRRRVLEFEVGDKVFLKLSPWKGVLRFGGKGKLSPRFIGPYEILERIGPVAHRLALPMELSRIHEI

Query:  FHVSMLRKYVPDSSYILEAQPVHLKENLYYEEEPIQILHKKEQVLRNKVIPLVKVLWRNHNTEEATWETEQAMKAQYPHLFTSSP
        FHVSMLRKYVP+  +ILEAQPVHLKENL YEEEPIQIL KKEQVLRNKVIPLVKVLWRNHNTEEATWETEQA+K QYPHLFTSSP
Subjt:  FHVSMLRKYVPDSSYILEAQPVHLKENLYYEEEPIQILHKKEQVLRNKVIPLVKVLWRNHNTEEATWETEQAMKAQYPHLFTSSP

KAA0042458.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.37e-16469.49Show/hide
Query:  MGEAAVSIGQLGSLIAHFQVRPILIDRIIKAQLDDAMMRKLAEEVRQNQRLNYSLRGDGAFMKYDRLCVPSDQAIKVQILKEAHSSAYAMHPGSTKMYRT
        MGEAAVSIG+LGSLI HFQVRPILIDRIIKAQLDDA +RKLAE+VRQNQRLNYSLRGDGA MKYDRLCVPSDQ IK QIL+EAHSSAY MHPGSTK+Y+T
Subjt:  MGEAAVSIGQLGSLIAHFQVRPILIDRIIKAQLDDAMMRKLAEEVRQNQRLNYSLRGDGAFMKYDRLCVPSDQAIKVQILKEAHSSAYAMHPGSTKMYRT

Query:  LKKHYWWPTMKCE-IADYVVKCLIC-----------------QQVKPERQRPAELLNPLPVLEWK--WE-HVT-MDFLFGLP-RTTIGHEGIWALYGRRC
        LKKH    T   + +A   V  ++                   +  P  Q+  ++L     L++K  W+ H++ M+F +     ++IG     ALYGRRC
Subjt:  LKKHYWWPTMKCE-IADYVVKCLIC-----------------QQVKPERQRPAELLNPLPVLEWK--WE-HVT-MDFLFGLP-RTTIGHEGIWALYGRRC

Query:  RTPMCWDEVGERKLVGLELVQTTSENVKII----------SGSYADKRRRVLEFEVGDKVFLKLSPWKGVLRFGGKGKLSPRFIGPYEILERIGPVAHRL
        RT +CWDEVGERKLVG ELVQ TSENVKII            SYADK RR LEFEVGDKVFLKLSPWKGVLRFG KGKLSPRFI PYEILERIGPVA+RL
Subjt:  RTPMCWDEVGERKLVGLELVQTTSENVKII----------SGSYADKRRRVLEFEVGDKVFLKLSPWKGVLRFGGKGKLSPRFIGPYEILERIGPVAHRL

Query:  ALPMELSRIHEIFHVSMLRKYVPDSSYILEAQPVHLKENLYYEEEPIQILHKKEQVLRNKVIPLVKVLWRNHNTEEATWETEQAMKAQYP
        ALPMELSRIH++FHVSMLRKYVPD S+ILEAQPV LKENL YEEEPIQIL KKEQVLRNKVIPLVKVLWRNHNTEEATWE EQAMK   P
Subjt:  ALPMELSRIHEIFHVSMLRKYVPDSSYILEAQPVHLKENLYYEEEPIQILHKKEQVLRNKVIPLVKVLWRNHNTEEATWETEQAMKAQYP

KAA0056222.1 reverse transcriptase [Cucumis melo var. makuwa]1.56e-20566.74Show/hide
Query:  MGEAAVSIGQLGSLIAHFQVRPILIDRIIKAQLDDAMMRKLAEEVRQNQRLNYSLRGDGAFMKYDRLCVPSDQAIKVQILKEAHSSAYAMHPGSTKMYRT
        MGEAAVS+G+L SL+AHFQVRP LIDRIIKAQLDDA +RKLAEEVRQNQRLNYSLRGDGA MK DRLCVPSDQ IK QIL+EAHSSAYAMHPGSTK+YRT
Subjt:  MGEAAVSIGQLGSLIAHFQVRPILIDRIIKAQLDDAMMRKLAEEVRQNQRLNYSLRGDGAFMKYDRLCVPSDQAIKVQILKEAHSSAYAMHPGSTKMYRT

Query:  LKKHYWWPTMKCEIADYVVKCLICQQVKPERQRPAELLNPLPVLEWKWEHVTMDFLFGLPRTTIGHEGIW------------------------------
        LKKHYWWP +K EIADYV KCLICQQVKPERQRPA LLNPLPV EWKWEHVTMDF  GLPRTT G++GIW                              
Subjt:  LKKHYWWPTMKCEIADYVVKCLICQQVKPERQRPAELLNPLPVLEWKWEHVTMDFLFGLPRTTIGHEGIW------------------------------

Query:  -----------------------------------------------------------------------ALYGRRCRTPMCWDEVGERKLVGLELVQT
                                                                               ALYGR CRT +CW+EVGERKLVGLELVQ 
Subjt:  -----------------------------------------------------------------------ALYGRRCRTPMCWDEVGERKLVGLELVQT

Query:  TSENVKII----------SGSYADKRRRVLEFEVGDKVFLKLSPWKGVLRFGGKGKLSPRFIGPYEILERIGPVAHRLALPMELSRIHEIFHVSMLRKYV
        TSENVKII            SYADKRRR LEFEV DKVFLKLSPWKGVLRFG KGKLSPRFIGPYEILERIGPV +RLALPMELSRI ++FHVSMLRKYV
Subjt:  TSENVKII----------SGSYADKRRRVLEFEVGDKVFLKLSPWKGVLRFGGKGKLSPRFIGPYEILERIGPVAHRLALPMELSRIHEIFHVSMLRKYV

Query:  PDSSYILEAQPVHLKENLYYEEEPIQILHKKEQVLRNKVIPLVKVLWRNHNTEEATWETEQAMKAQYPHLFTSSP
        PD ++ILEAQPVHLKENL YEEEPIQIL KKEQV+RNK+IPLVKVLWRNHNTEEATWETEQAMKAQYP+LFTSSP
Subjt:  PDSSYILEAQPVHLKENLYYEEEPIQILHKKEQVLRNKVIPLVKVLWRNHNTEEATWETEQAMKAQYPHLFTSSP

TYK21477.1 reverse transcriptase [Cucumis melo var. makuwa]2.50e-22981.53Show/hide
Query:  MGEAAVSIGQLGSLIAHFQVRPILIDRIIKAQLDDAMMRKLAEEVRQNQRLNYSLRGDGAFMKYDRLCVPSDQAIKVQILKEAHSSAYAMHPGSTKMYRT
        MGEAAVSIGQLGSLIAHFQVRPILIDRIIKAQLDDAMMRKLAEEVRQNQRLNYSLRGDGAFMKYDRLCVPSDQAIKVQILKEAHSSAYAMHPGSTKMYRT
Subjt:  MGEAAVSIGQLGSLIAHFQVRPILIDRIIKAQLDDAMMRKLAEEVRQNQRLNYSLRGDGAFMKYDRLCVPSDQAIKVQILKEAHSSAYAMHPGSTKMYRT

Query:  LKKHYWWPTMKCEIADYVVKCLICQQVKPERQRPAELLNPLPVLEWKWEHVTMDFLFGLPRTTIGHEGIWALYGRRCR---------TPMCW--------
        LKKHYWWPTMKCEIADYV KCLICQQVKPERQRPAELLNPLPVLEWKWEHVTMDFLFGLPRTTIGHEGIW +  R  R         T   W        
Subjt:  LKKHYWWPTMKCEIADYVVKCLICQQVKPERQRPAELLNPLPVLEWKWEHVTMDFLFGLPRTTIGHEGIWALYGRRCR---------TPMCW--------

Query:  -------------DEVGERKLVGLE------------LVQTTSENVKIISGSYADKRRRVLEFEVGDKVFLKLSPWKGVLRFGGKGKLSPRFIGPYEILE
                     D+  ER +  LE            +V+     +K+  G+   KRRRVLEFEVGDKVFLKLSPWKGVLRFGGKGKLSPRFIGPYEILE
Subjt:  -------------DEVGERKLVGLE------------LVQTTSENVKIISGSYADKRRRVLEFEVGDKVFLKLSPWKGVLRFGGKGKLSPRFIGPYEILE

Query:  RIGPVAHRLALPMELSRIHEIFHVSMLRKYVPDSSYILEAQPVHLKENLYYEEEPIQILHKKEQVLRNKVIPLVKVLWRNHNTEEATWETEQAMKAQYPH
        RIGPVAHRLALPMELSRIHEIFHVSMLRKYVPDSSYILEAQPVHLKENLYYEEE IQILHKKEQVLRNKVIPLVKVLWRNHNTEEATWETEQAMKAQYPH
Subjt:  RIGPVAHRLALPMELSRIHEIFHVSMLRKYVPDSSYILEAQPVHLKENLYYEEEPIQILHKKEQVLRNKVIPLVKVLWRNHNTEEATWETEQAMKAQYPH

Query:  LFTSSP
        LFTSSP
Subjt:  LFTSSP

TrEMBL top hitse value%identityAlignment
A0A5A7SQ03 Reverse transcriptase1.3e-18181.77Show/hide
Query:  MGEAAVSIGQLGSLIAHFQVRPILIDRIIKAQLDDAMMRKLAEEVRQNQRLNYSLRGDGAFMKYDRLCVPSDQAIKVQILKEAHSSAYAMHPGSTKMYRT
        MGEAAVSIGQLGSLIAHFQVRPILIDRIIKAQLDDAMMRKLAEEVRQNQRLNYSLRGDGAFMKYDRLCVPSDQAIKVQILKEAHSSAYAMHPGSTKMYRT
Subjt:  MGEAAVSIGQLGSLIAHFQVRPILIDRIIKAQLDDAMMRKLAEEVRQNQRLNYSLRGDGAFMKYDRLCVPSDQAIKVQILKEAHSSAYAMHPGSTKMYRT

Query:  LKKHYWWPTMKCEIADYVVKCLICQQVKPERQRPAELLNPLPVLEWKWEHVTMDFLFGLPRTTIGHEGIWALYGRRCR---------TPMCW--------
        LKKHYWWPTMKCEIADYV KCLICQQVKPERQRPAELLNPLPVLEWKWEHVTMDFLFGLPRTTIGHEGIW +  R  R         T   W        
Subjt:  LKKHYWWPTMKCEIADYVVKCLICQQVKPERQRPAELLNPLPVLEWKWEHVTMDFLFGLPRTTIGHEGIWALYGRRCR---------TPMCW--------

Query:  -------------DEVGERKLVGLE------------LVQTTSENVKIISGSYADKRRRVLEFEVGDKVFLKLSPWKGVLRFGGKGKLSPRFIGPYEILE
                     D+  ER +  LE            +V+     +K+  G   +KRRRVLEFEVGDKVFLKLSPWKGVLRFGGKGKLSPRFIGPYEILE
Subjt:  -------------DEVGERKLVGLE------------LVQTTSENVKIISGSYADKRRRVLEFEVGDKVFLKLSPWKGVLRFGGKGKLSPRFIGPYEILE

Query:  RIGPVAHRLALPMELSRIHEIFHVSMLRKYVPDSSYILEAQPVHLKENLYYEEEPIQILHKKEQVLRNKVIPLVKVLWRNHNTEEATWETEQAMKAQYPH
        RIGPVAHRLALPMELSRIHEIFHVSMLRKYVPDSSYILEAQPVHLKENLYYEEEPIQILHKKEQVLRNKVIPLVKVLWRNHNTEEATWETEQAMKAQYPH
Subjt:  RIGPVAHRLALPMELSRIHEIFHVSMLRKYVPDSSYILEAQPVHLKENLYYEEEPIQILHKKEQVLRNKVIPLVKVLWRNHNTEEATWETEQAMKAQYPH

Query:  LFTSSP
        LFTSSP
Subjt:  LFTSSP

A0A5A7UK27 Reverse transcriptase2.5e-16666.74Show/hide
Query:  MGEAAVSIGQLGSLIAHFQVRPILIDRIIKAQLDDAMMRKLAEEVRQNQRLNYSLRGDGAFMKYDRLCVPSDQAIKVQILKEAHSSAYAMHPGSTKMYRT
        MGEAAVS+G+L SL+AHFQVRP LIDRIIKAQLDDA +RKLAEEVRQNQRLNYSLRGDGA MK DRLCVPSDQ IK QIL+EAHSSAYAMHPGSTK+YRT
Subjt:  MGEAAVSIGQLGSLIAHFQVRPILIDRIIKAQLDDAMMRKLAEEVRQNQRLNYSLRGDGAFMKYDRLCVPSDQAIKVQILKEAHSSAYAMHPGSTKMYRT

Query:  LKKHYWWPTMKCEIADYVVKCLICQQVKPERQRPAELLNPLPVLEWKWEHVTMDFLFGLPRTTIGHEGIW------------------------------
        LKKHYWWP +K EIADYV KCLICQQVKPERQRPA LLNPLPV EWKWEHVTMDF  GLPRTT G++GIW                              
Subjt:  LKKHYWWPTMKCEIADYVVKCLICQQVKPERQRPAELLNPLPVLEWKWEHVTMDFLFGLPRTTIGHEGIW------------------------------

Query:  -----------------------------------------------------------------------ALYGRRCRTPMCWDEVGERKLVGLELVQT
                                                                               ALYGR CRT +CW+EVGERKLVGLELVQ 
Subjt:  -----------------------------------------------------------------------ALYGRRCRTPMCWDEVGERKLVGLELVQT

Query:  TSENVKII----------SGSYADKRRRVLEFEVGDKVFLKLSPWKGVLRFGGKGKLSPRFIGPYEILERIGPVAHRLALPMELSRIHEIFHVSMLRKYV
        TSENVKII            SYADKRRR LEFEV DKVFLKLSPWKGVLRFG KGKLSPRFIGPYEILERIGPV +RLALPMELSRI ++FHVSMLRKYV
Subjt:  TSENVKII----------SGSYADKRRRVLEFEVGDKVFLKLSPWKGVLRFGGKGKLSPRFIGPYEILERIGPVAHRLALPMELSRIHEIFHVSMLRKYV

Query:  PDSSYILEAQPVHLKENLYYEEEPIQILHKKEQVLRNKVIPLVKVLWRNHNTEEATWETEQAMKAQYPHLFTSSP
        PD ++ILEAQPVHLKENL YEEEPIQIL KKEQV+RNK+IPLVKVLWRNHNTEEATWETEQAMKAQYP+LFTSSP
Subjt:  PDSSYILEAQPVHLKENLYYEEEPIQILHKKEQVLRNKVIPLVKVLWRNHNTEEATWETEQAMKAQYPHLFTSSP

A0A5D3DCU0 Reverse transcriptase1.1e-18081.53Show/hide
Query:  MGEAAVSIGQLGSLIAHFQVRPILIDRIIKAQLDDAMMRKLAEEVRQNQRLNYSLRGDGAFMKYDRLCVPSDQAIKVQILKEAHSSAYAMHPGSTKMYRT
        MGEAAVSIGQLGSLIAHFQVRPILIDRIIKAQLDDAMMRKLAEEVRQNQRLNYSLRGDGAFMKYDRLCVPSDQAIKVQILKEAHSSAYAMHPGSTKMYRT
Subjt:  MGEAAVSIGQLGSLIAHFQVRPILIDRIIKAQLDDAMMRKLAEEVRQNQRLNYSLRGDGAFMKYDRLCVPSDQAIKVQILKEAHSSAYAMHPGSTKMYRT

Query:  LKKHYWWPTMKCEIADYVVKCLICQQVKPERQRPAELLNPLPVLEWKWEHVTMDFLFGLPRTTIGHEGIWALYGRRCR---------TPMCW--------
        LKKHYWWPTMKCEIADYV KCLICQQVKPERQRPAELLNPLPVLEWKWEHVTMDFLFGLPRTTIGHEGIW +  R  R         T   W        
Subjt:  LKKHYWWPTMKCEIADYVVKCLICQQVKPERQRPAELLNPLPVLEWKWEHVTMDFLFGLPRTTIGHEGIWALYGRRCR---------TPMCW--------

Query:  -------------DEVGERKLVGLE------------LVQTTSENVKIISGSYADKRRRVLEFEVGDKVFLKLSPWKGVLRFGGKGKLSPRFIGPYEILE
                     D+  ER +  LE            +V+     +K+  G   +KRRRVLEFEVGDKVFLKLSPWKGVLRFGGKGKLSPRFIGPYEILE
Subjt:  -------------DEVGERKLVGLE------------LVQTTSENVKIISGSYADKRRRVLEFEVGDKVFLKLSPWKGVLRFGGKGKLSPRFIGPYEILE

Query:  RIGPVAHRLALPMELSRIHEIFHVSMLRKYVPDSSYILEAQPVHLKENLYYEEEPIQILHKKEQVLRNKVIPLVKVLWRNHNTEEATWETEQAMKAQYPH
        RIGPVAHRLALPMELSRIHEIFHVSMLRKYVPDSSYILEAQPVHLKENLYYEEE IQILHKKEQVLRNKVIPLVKVLWRNHNTEEATWETEQAMKAQYPH
Subjt:  RIGPVAHRLALPMELSRIHEIFHVSMLRKYVPDSSYILEAQPVHLKENLYYEEEPIQILHKKEQVLRNKVIPLVKVLWRNHNTEEATWETEQAMKAQYPH

Query:  LFTSSP
        LFTSSP
Subjt:  LFTSSP

A0A5D3DES5 DNA/RNA polymerases superfamily protein1.8e-13269.45Show/hide
Query:  MGEAAVSIGQLGSLIAHFQVRPILIDRIIKAQLDDAMMRKLAEEVRQNQRLNYSLRGDGAFMKYDRLCVPSDQAIKVQILKEAHSSAYAMHPGSTKMYRT
        M EAAVS+G+LGSLIAHFQV+PILIDRIIKAQLDDA +RKLAEEVRQNQRLNYSL+ D A MKYDRLCVPSDQ IK QILKEAHSSAYAMHPGSTK+Y T
Subjt:  MGEAAVSIGQLGSLIAHFQVRPILIDRIIKAQLDDAMMRKLAEEVRQNQRLNYSLRGDGAFMKYDRLCVPSDQAIKVQILKEAHSSAYAMHPGSTKMYRT

Query:  LKKHYWWPTMKCEIADYVVKCLICQQVKPERQRPAELLNPLPVLEWKWEHVTMDFLFGLPR-TTIGHEGIWALYG--------RRCR-TPMCWDEVGERK
        LKKHYWW  MK EIADYV KCLICQQVKPERQRPA LLNPLPVLEWKWEHVT    F L +   +  + I + YG        R  R T   W  +  ++
Subjt:  LKKHYWWPTMKCEIADYVVKCLICQQVKPERQRPAELLNPLPVLEWKWEHVTMDFLFGLPR-TTIGHEGIWALYG--------RRCR-TPMCWDEVGERK

Query:  LVGLEL-------VQTTSENVKIISGSYADKRRRVLEF-EVGDKVFLKLSPWKG-VLRFGGKGKLSPRFIGPYEILERIGPVAHRLALPMELSRIHEIFH
         +G +L        Q   ++ + I       R   L+F +V +  +  +   KG VLRFG KGKLSPRFI PYEILERIGPVA+RL LPMELSRIH++FH
Subjt:  LVGLEL-------VQTTSENVKIISGSYADKRRRVLEF-EVGDKVFLKLSPWKG-VLRFGGKGKLSPRFIGPYEILERIGPVAHRLALPMELSRIHEIFH

Query:  VSMLRKYVPDSSYILEAQPVHLKENLYYEEEPIQILHKKEQVLRNKVIPLVKVLWRNHNTEEATWETEQAMKAQYPHLFTSSP
        VSMLRKYVP+  +ILEAQPVHLKENL YEEEPIQIL KKEQVLRNKVIPLVKVLWRNHNTEEATWETEQA+K QYPHLFTSSP
Subjt:  VSMLRKYVPDSSYILEAQPVHLKENLYYEEEPIQILHKKEQVLRNKVIPLVKVLWRNHNTEEATWETEQAMKAQYPHLFTSSP

A0A5D3DHF7 Putative DNA/RNA polymerases superfamily protein2.6e-13469.15Show/hide
Query:  MGEAAVSIGQLGSLIAHFQVRPILIDRIIKAQLDDAMMRKLAEEVRQNQRLNYSLRGDGAFMKYDRLCVPSDQAIKVQILKEAHSSAYAMHPGSTKMYRT
        MGEAAVSIG+LGSLI HFQVRPILIDRIIKAQLDDA +RKLAE+VRQNQRLNYSLRGDGA MKYDRLCVPSDQ IK QIL+EAHSSAY MHPGSTK+Y+T
Subjt:  MGEAAVSIGQLGSLIAHFQVRPILIDRIIKAQLDDAMMRKLAEEVRQNQRLNYSLRGDGAFMKYDRLCVPSDQAIKVQILKEAHSSAYAMHPGSTKMYRT

Query:  LKKHYWWPTMKCE-----IADYVVKCL-------------ICQQVKPERQRPAELLNPLPV-LEWKWE-HVT-MDFLFGLP-RTTIGHEGIWALYGRRCR
        LKKH    T   +       D +V                   +  P  Q+  ++L    +  +  W+ H++ M+F +     ++IG     ALYGRRCR
Subjt:  LKKHYWWPTMKCE-----IADYVVKCL-------------ICQQVKPERQRPAELLNPLPV-LEWKWE-HVT-MDFLFGLP-RTTIGHEGIWALYGRRCR

Query:  TPMCWDEVGERKLVGLELVQTTSENVKII----------SGSYADKRRRVLEFEVGDKVFLKLSPWKGVLRFGGKGKLSPRFIGPYEILERIGPVAHRLA
        T +CWDEVGERKLVG ELVQ TSENVKII            SYADK RR LEFEVGDKVFLKLSPWKGVLRFG KGKLSPRFI PYEILERIGPVA+RLA
Subjt:  TPMCWDEVGERKLVGLELVQTTSENVKII----------SGSYADKRRRVLEFEVGDKVFLKLSPWKGVLRFGGKGKLSPRFIGPYEILERIGPVAHRLA

Query:  LPMELSRIHEIFHVSMLRKYVPDSSYILEAQPVHLKENLYYEEEPIQILHKKEQVLRNKVIPLVKVLWRNHNTEEATWETEQAMKAQYP
        LPMELSRIH++FHVSMLRKYVPD S+ILEAQPV LKENL YEEEPIQIL KKEQVLRNKVIPLVKVLWRNHNTEEATWE EQAMK   P
Subjt:  LPMELSRIHEIFHVSMLRKYVPDSSYILEAQPVHLKENLYYEEEPIQILHKKEQVLRNKVIPLVKVLWRNHNTEEATWETEQAMKAQYP

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein5.9e-1123.33Show/hide
Query:  DRIIKAQLDDAMMRKLAEEVRQNQRLNYSLRGDGAFMKYDRLCVPSDQAIKVQILKEAHSSAYAMHPGSTKMYRTLKKHYWWPTMKCEIADYVVKCLICQ
        ++++    +D  +  L     +    N  L+        D++ +P+D  +   I+K+ H     +HPG   +   + + + W  ++ +I +YV  C  CQ
Subjt:  DRIIKAQLDDAMMRKLAEEVRQNQRLNYSLRGDGAFMKYDRLCVPSDQAIKVQILKEAHSSAYAMHPGSTKMYRTLKKHYWWPTMKCEIADYVVKCLICQ

Query:  QVKPERQRPAELLNPLPVLEWKWEHVTMDFLFGLPRTTIGHEGIWALYGR
          K    +P   L P+P  E  WE ++MDF+  LP ++ G+  ++ +  R
Subjt:  QVKPERQRPAELLNPLPVLEWKWEHVTMDFLFGLPRTTIGHEGIWALYGR

P0CT41 Transposon Tf2-12 polyprotein5.9e-1123.33Show/hide
Query:  DRIIKAQLDDAMMRKLAEEVRQNQRLNYSLRGDGAFMKYDRLCVPSDQAIKVQILKEAHSSAYAMHPGSTKMYRTLKKHYWWPTMKCEIADYVVKCLICQ
        ++++    +D  +  L     +    N  L+        D++ +P+D  +   I+K+ H     +HPG   +   + + + W  ++ +I +YV  C  CQ
Subjt:  DRIIKAQLDDAMMRKLAEEVRQNQRLNYSLRGDGAFMKYDRLCVPSDQAIKVQILKEAHSSAYAMHPGSTKMYRTLKKHYWWPTMKCEIADYVVKCLICQ

Query:  QVKPERQRPAELLNPLPVLEWKWEHVTMDFLFGLPRTTIGHEGIWALYGR
          K    +P   L P+P  E  WE ++MDF+  LP ++ G+  ++ +  R
Subjt:  QVKPERQRPAELLNPLPVLEWKWEHVTMDFLFGLPRTTIGHEGIWALYGR

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein8.2e-1335.83Show/hide
Query:  EVRQNQRLNYSLRGDGAFMKYDRLCVPSDQAIKVQILKEAHSSAYAMHPGSTKMYRTLKKHYWWPTMKCEIADYVVKCLICQQVKPERQRPAELLNPLPV
        E+ +  R NYSL  +  + + DRL VP  Q   V  L   H + +  H G T     +   Y+WP ++  I  Y+  C+ CQ +K  R R   LL PLP+
Subjt:  EVRQNQRLNYSLRGDGAFMKYDRLCVPSDQAIKVQILKEAHSSAYAMHPGSTKMYRTLKKHYWWPTMKCEIADYVVKCLICQQVKPERQRPAELLNPLPV

Query:  LEWKWEHVTMDFLFGLPRTT
         E +W  ++MDF+ GLP T+
Subjt:  LEWKWEHVTMDFLFGLPRTT

Q99315 Transposon Ty3-G Gag-Pol polyprotein8.2e-1335.83Show/hide
Query:  EVRQNQRLNYSLRGDGAFMKYDRLCVPSDQAIKVQILKEAHSSAYAMHPGSTKMYRTLKKHYWWPTMKCEIADYVVKCLICQQVKPERQRPAELLNPLPV
        E+ +  R NYSL  +  + + DRL VP  Q   V  L   H + +  H G T     +   Y+WP ++  I  Y+  C+ CQ +K  R R   LL PLP+
Subjt:  EVRQNQRLNYSLRGDGAFMKYDRLCVPSDQAIKVQILKEAHSSAYAMHPGSTKMYRTLKKHYWWPTMKCEIADYVVKCLICQQVKPERQRPAELLNPLPV

Query:  LEWKWEHVTMDFLFGLPRTT
         E +W  ++MDF+ GLP T+
Subjt:  LEWKWEHVTMDFLFGLPRTT

Q9UR07 Transposon Tf2-11 polyprotein5.9e-1123.33Show/hide
Query:  DRIIKAQLDDAMMRKLAEEVRQNQRLNYSLRGDGAFMKYDRLCVPSDQAIKVQILKEAHSSAYAMHPGSTKMYRTLKKHYWWPTMKCEIADYVVKCLICQ
        ++++    +D  +  L     +    N  L+        D++ +P+D  +   I+K+ H     +HPG   +   + + + W  ++ +I +YV  C  CQ
Subjt:  DRIIKAQLDDAMMRKLAEEVRQNQRLNYSLRGDGAFMKYDRLCVPSDQAIKVQILKEAHSSAYAMHPGSTKMYRTLKKHYWWPTMKCEIADYVVKCLICQ

Query:  QVKPERQRPAELLNPLPVLEWKWEHVTMDFLFGLPRTTIGHEGIWALYGR
          K    +P   L P+P  E  WE ++MDF+  LP ++ G+  ++ +  R
Subjt:  QVKPERQRPAELLNPLPVLEWKWEHVTMDFLFGLPRTTIGHEGIWALYGR

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAAGCCGCTGTGTCAATAGGCCAGTTGGGAAGTTTAATTGCACATTTCCAAGTGCGACCTATTTTGATAGACCGTATTATTAAAGCCCAACTAGATGATGCAAT
GATGAGGAAGTTAGCAGAAGAGGTAAGACAAAACCAAAGATTGAATTATAGCTTGAGGGGTGATGGTGCCTTCATGAAATATGATAGGTTGTGTGTACCCAGTGACCAAG
CGATAAAAGTTCAAATTTTAAAGGAAGCACATAGTTCTGCATATGCAATGCATCCTGGTAGTACGAAAATGTATAGAACTTTGAAGAAACACTATTGGTGGCCAACTATG
AAGTGTGAGATTGCAGATTATGTGGTTAAGTGTTTGATATGTCAGCAAGTTAAACCTGAACGTCAGAGACCAGCGGAACTCCTAAATCCTCTTCCAGTGCTGGAATGGAA
ATGGGAGCATGTTACCATGGACTTTCTTTTTGGACTACCCCGTACAACGATTGGGCATGAGGGCATTTGGGCTTTGTATGGTAGACGTTGTAGAACTCCCATGTGCTGGG
ATGAAGTTGGAGAAAGGAAGTTAGTGGGGCTAGAATTAGTACAAACCACTTCAGAGAATGTGAAGATTATTAGCGGAAGTTATGCAGATAAGCGCCGACGAGTTTTAGAA
TTTGAAGTTGGTGACAAGGTCTTTCTAAAGTTATCTCCTTGGAAAGGTGTGCTTCGATTTGGCGGAAAAGGAAAGTTGAGTCCAAGATTTATTGGGCCTTATGAGATACT
AGAACGTATTGGGCCTGTAGCACATCGTTTGGCGTTGCCTATGGAACTTTCCAGGATTCATGAAATATTTCATGTGTCAATGTTGCGTAAGTACGTCCCAGATTCATCTT
ATATTCTTGAAGCACAACCAGTTCATTTGAAAGAGAACTTGTACTATGAAGAGGAGCCAATACAAATTCTTCACAAGAAGGAACAAGTGCTAAGGAACAAAGTGATCCCA
TTAGTTAAGGTTCTTTGGAGGAACCATAATACTGAAGAAGCAACGTGGGAGACGGAGCAAGCAATGAAGGCGCAATACCCACATCTTTTCACATCATCACCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAAGCCGCTGTGTCAATAGGCCAGTTGGGAAGTTTAATTGCACATTTCCAAGTGCGACCTATTTTGATAGACCGTATTATTAAAGCCCAACTAGATGATGCAAT
GATGAGGAAGTTAGCAGAAGAGGTAAGACAAAACCAAAGATTGAATTATAGCTTGAGGGGTGATGGTGCCTTCATGAAATATGATAGGTTGTGTGTACCCAGTGACCAAG
CGATAAAAGTTCAAATTTTAAAGGAAGCACATAGTTCTGCATATGCAATGCATCCTGGTAGTACGAAAATGTATAGAACTTTGAAGAAACACTATTGGTGGCCAACTATG
AAGTGTGAGATTGCAGATTATGTGGTTAAGTGTTTGATATGTCAGCAAGTTAAACCTGAACGTCAGAGACCAGCGGAACTCCTAAATCCTCTTCCAGTGCTGGAATGGAA
ATGGGAGCATGTTACCATGGACTTTCTTTTTGGACTACCCCGTACAACGATTGGGCATGAGGGCATTTGGGCTTTGTATGGTAGACGTTGTAGAACTCCCATGTGCTGGG
ATGAAGTTGGAGAAAGGAAGTTAGTGGGGCTAGAATTAGTACAAACCACTTCAGAGAATGTGAAGATTATTAGCGGAAGTTATGCAGATAAGCGCCGACGAGTTTTAGAA
TTTGAAGTTGGTGACAAGGTCTTTCTAAAGTTATCTCCTTGGAAAGGTGTGCTTCGATTTGGCGGAAAAGGAAAGTTGAGTCCAAGATTTATTGGGCCTTATGAGATACT
AGAACGTATTGGGCCTGTAGCACATCGTTTGGCGTTGCCTATGGAACTTTCCAGGATTCATGAAATATTTCATGTGTCAATGTTGCGTAAGTACGTCCCAGATTCATCTT
ATATTCTTGAAGCACAACCAGTTCATTTGAAAGAGAACTTGTACTATGAAGAGGAGCCAATACAAATTCTTCACAAGAAGGAACAAGTGCTAAGGAACAAAGTGATCCCA
TTAGTTAAGGTTCTTTGGAGGAACCATAATACTGAAGAAGCAACGTGGGAGACGGAGCAAGCAATGAAGGCGCAATACCCACATCTTTTCACATCATCACCTTGA
Protein sequenceShow/hide protein sequence
MGEAAVSIGQLGSLIAHFQVRPILIDRIIKAQLDDAMMRKLAEEVRQNQRLNYSLRGDGAFMKYDRLCVPSDQAIKVQILKEAHSSAYAMHPGSTKMYRTLKKHYWWPTM
KCEIADYVVKCLICQQVKPERQRPAELLNPLPVLEWKWEHVTMDFLFGLPRTTIGHEGIWALYGRRCRTPMCWDEVGERKLVGLELVQTTSENVKIISGSYADKRRRVLE
FEVGDKVFLKLSPWKGVLRFGGKGKLSPRFIGPYEILERIGPVAHRLALPMELSRIHEIFHVSMLRKYVPDSSYILEAQPVHLKENLYYEEEPIQILHKKEQVLRNKVIP
LVKVLWRNHNTEEATWETEQAMKAQYPHLFTSSP