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IVF0009876 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0009876
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionDNA-directed RNA polymerase subunit
Genome locationchr04:24670878..24673450
RNA-Seq ExpressionIVF0009876
SyntenyIVF0009876
Gene Ontology termsGO:0006386 - termination of RNA polymerase III transcription (biological process)
GO:0042779 - tRNA 3'-trailer cleavage (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001222 - Zinc finger, TFIIS-type
IPR001529 - DNA-directed RNA polymerase, M/15kDa subunit
IPR012164 - DNA-directed RNA polymerase subunit/transcription factor S
IPR019761 - DNA-directed RNA polymerase M, 15kDa subunit, conserved site
IPR029401 - Nudix hydrolase, N-terminal
IPR034014 - Pol III subunit C11, C-terminal zinc ribbon


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597716.1 DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. sororia]7.10e-7897.3Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNC FGKAAFIQIQLRSADEPA+TFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRQNWRED
        NE+CRQNWRED
Subjt:  NENCRQNWRED

KAG7029162.1 DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. argyrosperma]8.67e-7897.3Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNC FGKAAFIQIQLRSADEPA+TFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRQNWRED
        NE+CRQNWRED
Subjt:  NENCRQNWRED

XP_004141147.1 DNA-directed RNA polymerase III subunit RPC10 [Cucumis sativus]2.16e-80100Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRQNWRED
        NENCRQNWRED
Subjt:  NENCRQNWRED

XP_022932603.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita moschata]2.08e-7897.3Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNC FGKAAFIQIQLRSADEPA+TFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRQNWRED
        NE+CRQNWRED
Subjt:  NENCRQNWRED

XP_038903069.1 DNA-directed RNA polymerase III subunit RPC10-like [Benincasa hispida]1.25e-7999.1Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRQNWRED
        NENCR NWRED
Subjt:  NENCRQNWRED

TrEMBL top hitse value%identityAlignment
A0A0A0LCM4 DNA-directed RNA polymerase subunit1.7e-60100Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRQNWRED
        NENCRQNWRED
Subjt:  NENCRQNWRED

A0A1S3CQ50 DNA-directed RNA polymerase subunit1.7e-60100Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRQNWRED
        NENCRQNWRED
Subjt:  NENCRQNWRED

A0A6J1DDT5 DNA-directed RNA polymerase subunit1.7e-5794.59Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYV +LENRVKIKRKQHL+KKELEPIISDDDMK AAQTEATCPNCAFGKAAFIQ+QLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRQNWRED
        NENCR NWRED
Subjt:  NENCRQNWRED

A0A6J1EXG3 DNA-directed RNA polymerase subunit5.4e-5997.3Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNC FGKAAFIQIQLRSADEPA+TFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRQNWRED
        NE+CRQNWRED
Subjt:  NENCRQNWRED

A0A6J1IB59 DNA-directed RNA polymerase subunit5.4e-5997.3Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNC FGKAAFIQIQLRSADEPA+TFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRQNWRED
        NE+CRQNWRED
Subjt:  NENCRQNWRED

SwissProt top hitse value%identityAlignment
O13896 DNA-directed RNA polymerase III subunit RPC102.7e-1537.72Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD-MKNAAQTEATCPN--CAFGKAAFIQIQLRSADEPATTFY
        M+FCPTCGN L   +   G+++ F C TCPY  +      +  +    +KE++ ++  ++  ++  QTE TC N  C   +A F Q+Q+RSADEP +TFY
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD-MKNAAQTEATCPN--CAFGKAAFIQIQLRSADEPATTFY

Query:  KCMNENCRQNWRED
        +C    C+  WRE+
Subjt:  KCMNENCRQNWRED

Q04307 DNA-directed RNA polymerase III subunit RPC107.8e-1538.6Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPN---CAFGKAAFIQIQLRSADEPATTFY
        + FCP+C NML     + G  +   C +CPY   +E  ++I  ++ L +KE++ ++      N  QT+  CPN   C    A F Q+Q+RSADEP TTFY
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPN---CAFGKAAFIQIQLRSADEPATTFY

Query:  KCMNENCRQNWRED
        KC+  NC   W+E+
Subjt:  KCMNENCRQNWRED

Q2M2S7 DNA-directed RNA polymerase III subunit RPC102.1e-1540.74Show/hide
Query:  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNE
        FCP CGN L  E     +  RF C TCPYV  +  +V   RK   +K+  + +      +N   T   CP C   +A F+Q+Q R ADEP TTFYKC N 
Subjt:  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNE

Query:  NCRQNWRE
         C   WR+
Subjt:  NCRQNWRE

Q9CQZ7 DNA-directed RNA polymerase III subunit RPC102.4e-1641.28Show/hide
Query:  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISD-DDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMN
        FCP CGN L  E     +  RF C TCPYV  +  +V  ++   L  KE++ ++      +N   T   CP C   +A F+Q+Q RSADEP TTFYKC N
Subjt:  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISD-DDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMN

Query:  ENCRQNWRE
          C   WR+
Subjt:  ENCRQNWRE

Q9Y2Y1 DNA-directed RNA polymerase III subunit RPC101.4e-1641.28Show/hide
Query:  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISD-DDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMN
        FCP CGN L  E     +  RF C TCPYV  +  +V  ++   L  KE++ ++      +N   T  +CP C   +A F+Q+Q RSADEP TTFYKC N
Subjt:  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISD-DDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMN

Query:  ENCRQNWRE
          C   WR+
Subjt:  ENCRQNWRE

Arabidopsis top hitse value%identityAlignment
AT1G01210.1 DNA-directed RNA polymerase, subunit M, archaeal3.2e-3254.05Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGN+L++E    G +SRFFC TCPYV+Y++ +V+IK+KQ LVKK +E +++ DD+  AA+TEA CP C   KA F  +Q+RSADEP + FY+C+
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRQNWRED
           C   WRE+
Subjt:  NENCRQNWRED

AT2G38560.1 transcript elongation factor IIS6.4e-0439.13Show/hide
Query:  AAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWR
        A+  +  C  C   K  + Q+Q RSADEP TT+  C+  NC  +W+
Subjt:  AAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWR

AT4G07950.1 DNA-directed RNA polymerase, subunit M, archaeal2.9e-3356.76Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGN+L++E    G SSRFFC TCPYV+ +E RV+IK+KQ LVKK +EP+++ DD+  AA+TEA CP C   KA F  +Q+RSADEP + FY+C+
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRQNWRED
           C   WRE+
Subjt:  NENCRQNWRED


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTTTGCCCAACTTGTGGGAACATGCTGCAATTTGAGTTGCCCAATATGGGCAAATCTTCCAGGTTCTTCTGCCCAACTTGTCCATATGTGTCCTACTTGGAAAA
CAGGGTAAAAATCAAAAGAAAGCAACATCTGGTGAAAAAGGAATTAGAACCCATAATCTCTGATGACGATATGAAAAATGCAGCCCAAACCGAAGCGACATGTCCAAATT
GTGCGTTTGGGAAGGCTGCTTTTATACAAATACAACTGAGATCAGCTGATGAACCTGCTACAACATTTTACAAGTGCATGAACGAAAACTGTCGACAGAATTGGCGCGAG
GATTAA
mRNA sequenceShow/hide mRNA sequence
TAGCAGCACAAAAGGAAAATAAAAATGAAAAATAAACCCAGAAAGGCAAGCCCTAACTAAATCGAATTTTCCCACGATCTTCTTCTTCCTATTTCTTCGACTAACCAACG
CTAAATTCCCTACGCCCTTCGCCTCCGATCACATCTCAGCCTTGCCAACGCCGCCGGCGGACTTAGCTATGGAGTTTTGCCCAACTTGTGGGAACATGCTGCAATTTGAG
TTGCCCAATATGGGCAAATCTTCCAGGTTCTTCTGCCCAACTTGTCCATATGTGTCCTACTTGGAAAACAGGGTAAAAATCAAAAGAAAGCAACATCTGGTGAAAAAGGA
ATTAGAACCCATAATCTCTGATGACGATATGAAAAATGCAGCCCAAACCGAAGCGACATGTCCAAATTGTGCGTTTGGGAAGGCTGCTTTTATACAAATACAACTGAGAT
CAGCTGATGAACCTGCTACAACATTTTACAAGTGCATGAACGAAAACTGTCGACAGAATTGGCGCGAGGATTAATTTGTCATTACTGATTTTGTTTTATTATTATTTTAA
CCCATTTTAGACGTAATTTATACGAATAAATTATTGTCTTTTACATAATTAGCATCATGAATTTTGTTGGGACTTCAGAATGAGAATCGTATCACAATTGTACCTCGTAT
ACTATTTTGTTCGTAGTTTTGCATTTTGAAAAAATATAACAAAAAAGTGAGGAGAAGAAAAGTTAC
Protein sequenceShow/hide protein sequence
MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRE
D