CuGenDBv2

Gene ID	IVF0009878
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	chr09:13721340..13721717
RNA-Seq Expression	IVF0009878
Synteny	IVF0009878
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0026071.1 uncharacterized protein E6C27_scaffold581G00620 [Cucumis melo var. makuwa]

1.33e-60

86.55

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Query:  MGFVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLRSLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIK
        MGF  GNLPVRYLGLPLLTGRLRSNDCAPLIQRITS+IRSW A VLSFAGRLQLVRSVLRSLQVYW SVF+LP  VHNEVD+ILRSYLWRGKEEGRGGIK
Subjt:  MGFVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLRSLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIK

Query:  VAWVEVCLPFEEGGLASKE
        VAWV+VCLPFEEGG   ++
Subjt:  VAWVEVCLPFEEGGLASKE

KAA0062333.1 putative reverse transcriptase [Cucumis melo var. makuwa]

3.88e-61

84.03

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Query:  MGFVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLRSLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIK
        MGFVLGNLPVRYLGLPLL+GRLRS+DCAPLIQRITSRIRSW A V SFAGRLQL+R VLRSLQV+W SVF+LP  VHN+VD+ILRSYLWR KEEGRGG+K
Subjt:  MGFVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLRSLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIK

Query:  VAWVEVCLPFEEGGLASKE
        VAWVEVCLPFEEGGLA ++
Subjt:  VAWVEVCLPFEEGGLASKE

KAA0065355.1 F17F8.5 [Cucumis melo var. makuwa]

3.24e-63

89.08

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Query:  MGFVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLRSLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIK
        MGFV GNLPVRYLGLPLL GRLRSNDCAPLIQR+TSRIRSWTA VLSF GRLQLVRSVLRSLQVYW SVF+LP  VHNEVD+ILRSYLWRGKEEGRGGIK
Subjt:  MGFVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLRSLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIK

Query:  VAWVEVCLPFEEGGLASKE
        VAWVEVCLPFEEGGLA ++
Subjt:  VAWVEVCLPFEEGGLASKE

TYK28099.1 uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa]

1.33e-60

86.55

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Query:  MGFVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLRSLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIK
        MGF  GNLPVRYLGLPLLTGRLRSNDCAPLIQRITS+IRSW A VLSFAGRLQLVRSVLRSLQVYW SVF+LP  VHNEVD+ILRSYLWRGKEEGRGGIK
Subjt:  MGFVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLRSLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIK

Query:  VAWVEVCLPFEEGGLASKE
        VAWV+VCLPFEEGG   ++
Subjt:  VAWVEVCLPFEEGGLASKE

XP_016902060.1 PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo]

3.07e-60

85.71

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Query:  MGFVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLRSLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIK
        MGF LGNLPVRYLGLPLLTGRLRSNDCAPLIQRITS IRSWTA VLSF G LQLVRSVL SLQVYW S+F+LP  VHNEVD+ILRSYLWRGKEEGRGG K
Subjt:  MGFVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLRSLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIK

Query:  VAWVEVCLPFEEGGLASKE
        VAWVEVCLPFEEG LA ++
Subjt:  VAWVEVCLPFEEGGLASKE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SPE5 Reverse transcriptase domain-containing protein

1.1e-52

86.55

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Query:  MGFVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLRSLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIK
        MGF  GNLPVRYLGLPLLTGRLRSNDCAPLIQRITS+IRSW A VLSFAGRLQLVRSVLRSLQVYW SVF+LP  VHNEVD+ILRSYLWRGKEEGRGGIK
Subjt:  MGFVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLRSLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIK

Query:  VAWVEVCLPFEEGGLASKE
        VAWV+VCLPFEEGG   ++
Subjt:  VAWVEVCLPFEEGGLASKE

A0A5A7TWG5 Reverse transcriptase domain-containing protein

3.5e-51

85.71

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Query:  MGFVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLRSLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIK
        MGFV GNL VRYLGLPLLTGRL SNDCAPLIQRITS+IRSWTA VLSFAGR+QLV SVLRSLQVYW SVF+LP  VHNEVD+ILRSYLWRGKEEGRGGIK
Subjt:  MGFVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLRSLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIK

Query:  VAWVEVCLPFEEGGLASKE
        VAWV+VCLPFEEGGL  ++
Subjt:  VAWVEVCLPFEEGGLASKE

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein

4.2e-52

100

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Query:  MGFVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLRSLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIK
        MGFVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLRSLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIK
Subjt:  MGFVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLRSLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIK

Query:  VAWVE
        VAWVE
Subjt:  VAWVE

A0A5A7VHU9 F17F8.5

4.5e-54

89.08

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Query:  MGFVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLRSLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIK
        MGFV GNLPVRYLGLPLL GRLRSNDCAPLIQR+TSRIRSWTA VLSF GRLQLVRSVLRSLQVYW SVF+LP  VHNEVD+ILRSYLWRGKEEGRGGIK
Subjt:  MGFVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLRSLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIK

Query:  VAWVEVCLPFEEGGLASKE
        VAWVEVCLPFEEGGLA ++
Subjt:  VAWVEVCLPFEEGGLASKE

A0A5D3DXE4 Reverse transcriptase domain-containing protein

1.1e-52

86.55

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Query:  MGFVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLRSLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIK
        MGF  GNLPVRYLGLPLLTGRLRSNDCAPLIQRITS+IRSW A VLSFAGRLQLVRSVLRSLQVYW SVF+LP  VHNEVD+ILRSYLWRGKEEGRGGIK
Subjt:  MGFVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLRSLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIK

Query:  VAWVEVCLPFEEGGLASKE
        VAWV+VCLPFEEGG   ++
Subjt:  VAWVEVCLPFEEGGLASKE

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

2.3e-15

38.61

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Query:  LPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLRSLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIKVAWVEVCLPFEEGG
        +P+L  R+  +    +++R++SR+  W    LSFAGRL L ++VL S+ V+  S  LLP S+ N +D++ R++LW    E +    V W +VC P +EGG
Subjt:  LPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLRSLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIKVAWVEVCLPFEEGG

Query:  L
        L
Subjt:  L

Arabidopsis top hits

e value

%identity

Alignment

AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

2.4e-28

53.1

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Query:  FVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLRSLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIKVA
        F  G LPVRYLGLPLLT ++ ++D  PL+++I  RI  WTA  LSFAGRLQL+ SV+ SL  +W S F LP +   E+D I  S+LW G E      KVA
Subjt:  FVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLRSLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIKVA

Query:  WVEVCLPFEEGGL
        W +VC P +EGGL
Subjt:  WVEVCLPFEEGGL

AT4G29090.1 Ribonuclease H-like superfamily protein

5.5e-04

32.2

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Query:  SLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIKVAWVEVCLPFEEGGLASKE
        +L  Y  + FLLP +V  ++  +L  + WR K+E +G    AW  +     EGG+  K+
Subjt:  SLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIKVAWVEVCLPFEEGGLASKE

Sequences

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CDS sequence

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ATGGGTTTTGTCCTTGGAAATCTCCCTGTTCGTTATCTTGGGCTTCCTTTACTTACTGGTCGGTTACGTTCTAATGATTGTGCACCTCTTATTCAGCGTATCACTAGCCG
GATTCGCTCTTGGACTGCCGGAGTTCTTTCTTTTGCTGGTAGATTGCAGCTTGTTCGTTCTGTGCTCCGCAGCCTTCAAGTTTACTGGACTAGTGTGTTTCTCCTTCCTG
TGTCTGTGCATAATGAGGTGGACGAGATCCTAAGGTCTTATCTTTGGAGGGGTAAGGAGGAAGGTAGAGGGGGTATTAAGGTGGCGTGGGTGGAAGTGTGTCTACCCTTT
GAGGAAGGCGGTCTTGCTTCCAAAGAGTGGCTAGTGCTAGTTCGGTGA

mRNA sequence

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Protein sequence

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MGFVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLRSLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIKVAWVEVCLPF
EEGGLASKEWLVLVR

IVF0009878 (gene) of Melon (IVF77) v1 genome