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IVF0009882 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0009882
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass, expressed
Genome locationchr09:13688289..13690153
RNA-Seq ExpressionIVF0009882
SyntenyIVF0009882
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047409.1 retrotransposon protein, putative, Ty3-gypsy sub-class [Cucumis melo var. makuwa]1.20e-1062.5Show/hide
Query:  RDSHSKDFSLCSWHYPSHIFPKYTSESELVRGRTKVQPGTIEKMANALPTSGERSS
        ++S+S+DFSL SW+ PS +  KY+S +EL  GRTKVQP  IEKM NAL  SGERSS
Subjt:  RDSHSKDFSLCSWHYPSHIFPKYTSESELVRGRTKVQPGTIEKMANALPTSGERSS

KAA0057641.1 hypothetical protein E6C27_scaffold43054G00020 [Cucumis melo var. makuwa]8.71e-1344.88Show/hide
Query:  ENAFQGRKWAKLKNFWCSSQENSNENALDSAFLSRGKKWSFNGFFILHCGSATVSLFCIRHKCLELRDSHSKDFSLCSWHYPSHIFPKYTSESELVRGRT
        E   Q RK  +LK+FWCSSQEN+++NA DSAF S GKK S  GFF          L  I HK  +L+ S+ +DF+  SWH  S +      E EL     
Subjt:  ENAFQGRKWAKLKNFWCSSQENSNENALDSAFLSRGKKWSFNGFFILHCGSATVSLFCIRHKCLELRDSHSKDFSLCSWHYPSHIFPKYTSESELVRGRT

Query:  KVQPGTIEKMANALPTSGERSSSVRNH
          Q G+  K    LPTSGE SS +RNH
Subjt:  KVQPGTIEKMANALPTSGERSSSVRNH

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]5.33e-1854.74Show/hide
Query:  QRVANARLVSETTENAFQGRKWAKLKNFWCSSQENSNENALDSAFLSRGKKWSFNGFFILHCGSATVSLFCIRHKCLELRDSHSKDFSLCSWHYP
        QRV NAR VSETT NA   +K A+LK+FWCSSQEN+ EN LDS F S GKK S +GFF L           I HK ++ R S+S+DF+  SWH P
Subjt:  QRVANARLVSETTENAFQGRKWAKLKNFWCSSQENSNENALDSAFLSRGKKWSFNGFFILHCGSATVSLFCIRHKCLELRDSHSKDFSLCSWHYP

KAA0065520.1 retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo var. makuwa]5.23e-3960.43Show/hide
Query:  MLLQRVANARLVSETTENAFQGRKWAKLKNFWCSSQENSNENALDSAFLSRGKKWSFNGFFILHCGSATVSLFCIRHKCLELRDSHSKDFSLCSWHYPSH
        +L QRVANAR VS   ++AFQ  K AKLKNFWCSSQE+++ENA DS FLS  KK S +GF +L C         + HK  EL+DS+S+DFSL SW  PS 
Subjt:  MLLQRVANARLVSETTENAFQGRKWAKLKNFWCSSQENSNENALDSAFLSRGKKWSFNGFFILHCGSATVSLFCIRHKCLELRDSHSKDFSLCSWHYPSH

Query:  IFPKYTSESELVRGRTKVQPGTIEKMANALPTSGERSSS
        +F KY + S+LVRGRTKVQ  TIEKMAN LPTSG+R SS
Subjt:  IFPKYTSESELVRGRTKVQPGTIEKMANALPTSGERSSS

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]5.26e-1476.92Show/hide
Query:  KDFSLCSWHYPSHIFPKYTSESELVRGRTKVQPGTIEKMANALPTSGERSSS
        KDFSL  WH+ S IFP+Y S SELV  RTKVQ GTIEK+ANALPTSGERSSS
Subjt:  KDFSLCSWHYPSHIFPKYTSESELVRGRTKVQPGTIEKMANALPTSGERSSS

TrEMBL top hitse value%identityAlignment
A0A5A7UVV0 Uncharacterized protein2.7e-1043.31Show/hide
Query:  ENAFQGRKWAKLKNFWCSSQENSNENALDSAFLSRGKKWSFNGFFILHCGSATVSLFCIRHKCLELRDSHSKDFSLCSWHYPSHIFPKYTSESELVRGRT
        E   Q RK  +LK+FWCSSQEN+++NA DSAF S GKK S  GFF          L  I HK  +L+ S+ +DF+  SWH            S L     
Subjt:  ENAFQGRKWAKLKNFWCSSQENSNENALDSAFLSRGKKWSFNGFFILHCGSATVSLFCIRHKCLELRDSHSKDFSLCSWHYPSHIFPKYTSESELVRGRT

Query:  KVQPGTIEKMANALPTSGERSSSVRNH
          Q G+  K    LPTSGE SS +RNH
Subjt:  KVQPGTIEKMANALPTSGERSSSVRNH

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein6.1e-1554.74Show/hide
Query:  QRVANARLVSETTENAFQGRKWAKLKNFWCSSQENSNENALDSAFLSRGKKWSFNGFFILHCGSATVSLFCIRHKCLELRDSHSKDFSLCSWHYP
        QRV NAR VSETT NA   +K A+LK+FWCSSQEN+ EN LDS F S GKK S +GFF L           I HK ++ R S+S+DF+  SWH P
Subjt:  QRVANARLVSETTENAFQGRKWAKLKNFWCSSQENSNENALDSAFLSRGKKWSFNGFFILHCGSATVSLFCIRHKCLELRDSHSKDFSLCSWHYP

A0A5A7VEB1 Retrotransposon protein, putative, Ty3-gypsy subclass, expressed1.4e-3260.43Show/hide
Query:  MLLQRVANARLVSETTENAFQGRKWAKLKNFWCSSQENSNENALDSAFLSRGKKWSFNGFFILHCGSATVSLFCIRHKCLELRDSHSKDFSLCSWHYPSH
        +L QRVANAR VS   ++AFQ  K AKLKNFWCSSQE+++ENA DS FLS  KK S +GF +         L C+ HK  EL+DS+S+DFSL SW  PS 
Subjt:  MLLQRVANARLVSETTENAFQGRKWAKLKNFWCSSQENSNENALDSAFLSRGKKWSFNGFFILHCGSATVSLFCIRHKCLELRDSHSKDFSLCSWHYPSH

Query:  IFPKYTSESELVRGRTKVQPGTIEKMANALPTSGERSSS
        +F KY + S+LVRGRTKVQ  TIEKMAN LPTSG+R SS
Subjt:  IFPKYTSESELVRGRTKVQPGTIEKMANALPTSGERSSS

A0A5D3BG85 Uncharacterized protein2.4e-1176.92Show/hide
Query:  KDFSLCSWHYPSHIFPKYTSESELVRGRTKVQPGTIEKMANALPTSGERSSS
        KDFSL  WH+ S IFP+Y S SELV  RTKVQ GTIEK+ANALPTSGERSSS
Subjt:  KDFSLCSWHYPSHIFPKYTSESELVRGRTKVQPGTIEKMANALPTSGERSSS

A0A5D3DFP2 Uncharacterized protein7.7e-1035.75Show/hide
Query:  ENAFQGRKWAKLKNFWCSSQENSNENALDSAFLSRGKKWSFNGFFIL----------HCGSATV--------------------------SLFCIRHKCL
        E     RKWA+L++FWCSSQEN+++NA DSAF S  KK S +GFF L            G  TV                           +   R K +
Subjt:  ENAFQGRKWAKLKNFWCSSQENSNENALDSAFLSRGKKWSFNGFFIL----------HCGSATV--------------------------SLFCIRHKCL

Query:  ELRD----------SHSKDFSLCSW---HYPSHIFP----KYTSESELVRGRTKVQPGTIEKMANALPTSGERSSSVRN
        EL D           ++ D +  SW     P   FP     + S SELV GRT V+  T+++    LPTSGERSS VRN
Subjt:  ELRD----------SHSKDFSLCSW---HYPSHIFP----KYTSESELVRGRTKVQPGTIEKMANALPTSGERSSSVRN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCTTGCAACGAGTGGCGAACGCTCGTCTGGTGTCAGAAACAACTGAAAATGCATTTCAGGGAAGGAAATGGGCTAAGCTTAAGAACTTCTGGTGTTCATCCCAAGA
AAATTCAAATGAGAATGCCCTAGACTCAGCTTTTCTATCACGGGGTAAAAAATGGTCCTTTAACGGTTTCTTTATTTTGCATTGCGGTTCTGCAACGGTTTCTTTGTTTT
GTATTCGTCATAAGTGCTTAGAGCTTCGGGACTCACACTCTAAGGACTTTAGTCTATGTTCCTGGCATTATCCCTCACACATCTTCCCAAAGTATACATCGGAAAGCGAG
CTCGTTAGAGGAAGAACTAAGGTGCAACCTGGAACGATCGAAAAGATGGCCAATGCTCTTCCAACGAGTGGCGAACGCTCATCCAGTGTCAGAAACCACTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTCTTGCAACGAGTGGCGAACGCTCGTCTGGTGTCAGAAACAACTGAAAATGCATTTCAGGGAAGGAAATGGGCTAAGCTTAAGAACTTCTGGTGTTCATCCCAAGA
AAATTCAAATGAGAATGCCCTAGACTCAGCTTTTCTATCACGGGGTAAAAAATGGTCCTTTAACGGTTTCTTTATTTTGCATTGCGGTTCTGCAACGGTTTCTTTGTTTT
GTATTCGTCATAAGTGCTTAGAGCTTCGGGACTCACACTCTAAGGACTTTAGTCTATGTTCCTGGCATTATCCCTCACACATCTTCCCAAAGTATACATCGGAAAGCGAG
CTCGTTAGAGGAAGAACTAAGGTGCAACCTGGAACGATCGAAAAGATGGCCAATGCTCTTCCAACGAGTGGCGAACGCTCATCCAGTGTCAGAAACCACTAA
Protein sequenceShow/hide protein sequence
MLLQRVANARLVSETTENAFQGRKWAKLKNFWCSSQENSNENALDSAFLSRGKKWSFNGFFILHCGSATVSLFCIRHKCLELRDSHSKDFSLCSWHYPSHIFPKYTSESE
LVRGRTKVQPGTIEKMANALPTSGERSSSVRNH